Wall clock time and date at job start Mon Mar 8 2021 09:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35845 * 117.00050 * 2 1 4 4 C 1.38541 * 120.11605 * 0.23557 * 3 2 1 5 5 C 1.38231 * 120.05865 * 180.29871 * 4 3 2 6 6 C 1.38342 * 120.30734 * 359.72030 * 5 4 3 7 7 C 1.50701 * 119.88395 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.47076 * 245.02098 * 7 6 5 9 9 Si 1.86298 * 109.46943 * 5.02420 * 7 6 5 10 10 H 1.48491 * 109.47445 * 59.99800 * 9 7 6 11 11 H 1.48500 * 109.46841 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47120 * 299.99746 * 9 7 6 13 13 C 1.38052 * 120.23316 * 0.02562 * 6 5 4 14 14 C 1.39259 * 119.93519 * 359.97347 * 13 6 5 15 15 C 1.48330 * 120.15202 * 180.02562 * 14 13 6 16 16 C 1.39365 * 120.12323 * 310.00660 * 15 14 13 17 17 C 1.38011 * 119.87682 * 179.97438 * 16 15 14 18 18 C 1.38324 * 120.12022 * 0.02562 * 17 16 15 19 19 Si 1.86803 * 119.87327 * 180.02562 * 18 17 16 20 20 C 1.86307 * 109.46888 * 269.95596 * 19 18 17 21 21 C 1.86302 * 109.47249 * 29.95539 * 19 18 17 22 22 C 1.86302 * 109.47109 * 149.95744 * 19 18 17 23 23 C 1.38324 * 120.25303 * 359.95826 * 18 17 16 24 24 C 1.38011 * 120.12016 * 0.04112 * 23 18 17 25 25 H 1.09001 * 109.46847 * 60.00012 * 1 2 3 26 26 H 1.09001 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46782 * 299.99614 * 1 2 3 28 28 H 1.07994 * 119.97131 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.84543 * 179.74022 * 5 4 3 30 30 H 1.08997 * 109.46917 * 125.02526 * 7 6 5 31 31 H 0.96696 * 113.99792 * 60.00007 * 8 7 6 32 32 H 1.08002 * 120.02969 * 179.97438 * 13 6 5 33 33 H 1.08005 * 120.06319 * 359.69647 * 16 15 14 34 34 H 1.08000 * 119.93783 * 179.97438 * 17 16 15 35 35 H 1.09000 * 109.47125 * 59.99949 * 20 19 18 36 36 H 1.09004 * 109.46919 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47033 * 299.99806 * 20 19 18 38 38 H 1.08992 * 109.46954 * 60.00201 * 21 19 18 39 39 H 1.09004 * 109.46772 * 180.02562 * 21 19 18 40 40 H 1.09005 * 109.46711 * 299.99909 * 21 19 18 41 41 H 1.08999 * 109.47106 * 60.00126 * 22 19 18 42 42 H 1.08996 * 109.47051 * 179.97438 * 22 19 18 43 43 H 1.09000 * 109.47028 * 299.99236 * 22 19 18 44 44 H 1.07996 * 119.94104 * 180.02562 * 23 18 17 45 45 H 1.08001 * 120.05982 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.2936 2.3738 0.0049 5 6 1.9224 3.6048 -0.0013 6 6 3.3036 3.6833 -0.0067 7 6 3.9791 5.0304 -0.0129 8 8 4.6967 5.1978 -1.2373 9 14 2.6940 6.3702 0.1421 10 1 1.9484 6.1962 1.4144 11 1 3.3597 7.6976 0.1353 12 1 1.7496 6.2848 -1.0008 13 6 4.0652 2.5319 -0.0063 14 6 3.4421 1.2865 -0.0001 15 6 4.2557 0.0462 0.0009 16 6 5.2839 -0.1164 -0.9257 17 6 6.0381 -1.2722 -0.9200 18 6 5.7747 -2.2683 0.0029 19 14 6.8004 -3.8296 0.0051 20 6 6.0126 -5.0915 -1.1165 21 6 8.5187 -3.4447 -0.6033 22 6 6.8926 -4.5097 1.7371 23 6 4.7557 -2.1121 0.9252 24 6 3.9951 -0.9605 0.9286 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2151 2.3189 0.0092 29 1 1.3326 4.5096 -0.0017 30 1 4.6723 5.0930 0.8259 31 1 4.1415 5.1533 -2.0277 32 1 5.1432 2.5969 -0.0110 33 1 5.4872 0.6586 -1.6500 34 1 6.8349 -1.3995 -1.6379 35 1 5.9586 -4.6936 -2.1298 36 1 6.6108 -6.0028 -1.1149 37 1 5.0073 -5.3167 -0.7605 38 1 8.9795 -2.7064 0.0528 39 1 9.1169 -4.3559 -0.6025 40 1 8.4646 -3.0468 -1.6168 41 1 5.8873 -4.7349 2.0930 42 1 7.4907 -5.4209 1.7382 43 1 7.3536 -3.7714 2.3932 44 1 4.5547 -2.8929 1.6438 45 1 3.1995 -0.8398 1.6488 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:01:28 Heat of formation + Delta-G solvation = -58.919518 kcal Electronic energy + Delta-G solvation = -23743.103928 eV Core-core repulsion = 20428.198702 eV Total energy + Delta-G solvation = -3314.905227 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53234 -39.59712 -39.12741 -37.14655 -33.82800 -31.96771 -31.67406 -30.11946 -29.27094 -28.54912 -28.26182 -28.26024 -26.14468 -24.49913 -23.44406 -22.47752 -21.54341 -19.29690 -18.34814 -17.72642 -17.19692 -16.80536 -16.40797 -16.10420 -15.83802 -15.71800 -15.39712 -15.12528 -14.65065 -14.42116 -14.28422 -14.04204 -13.99273 -13.74144 -13.73547 -13.61164 -13.33536 -13.16311 -13.09576 -13.08697 -12.95636 -12.85368 -12.25786 -12.17466 -12.06049 -12.04270 -11.90656 -11.57395 -10.93648 -10.74530 -10.74058 -10.40920 -10.25266 -9.76547 -9.55244 -8.97850 -0.16271 0.24959 0.58475 0.61108 1.17332 1.44392 1.51564 1.87538 1.90579 2.05063 2.11841 2.27314 2.53879 2.69121 3.00624 3.48253 3.58599 3.69562 3.83248 4.02095 4.09834 4.16756 4.19261 4.33257 4.35260 4.50002 4.56222 4.66103 4.68022 4.71430 4.82096 4.85489 4.85742 4.89651 4.90375 4.91288 4.92255 4.99557 5.07458 5.17014 5.23551 5.34501 5.51266 5.59923 5.61568 5.66103 5.68471 5.70918 5.73445 6.18103 6.33846 6.70365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.133 3.867 4 C -0.204 4.204 5 C -0.087 4.087 6 C -0.157 4.157 7 C -0.076 4.076 8 O -0.553 6.553 9 Si 0.984 3.016 10 H -0.257 1.257 11 H -0.275 1.275 12 H -0.248 1.248 13 C -0.047 4.047 14 C -0.097 4.097 15 C -0.045 4.045 16 C -0.133 4.133 17 C -0.099 4.099 18 C -0.381 4.381 19 Si 1.124 2.876 20 C -0.462 4.462 21 C -0.460 4.460 22 C -0.461 4.461 23 C -0.099 4.099 24 C -0.119 4.119 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.154 0.846 29 H 0.139 0.861 30 H 0.121 0.879 31 H 0.388 0.612 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.136 0.864 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 -1.060 -0.057 2.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.087 3.913 4 C -0.223 4.223 5 C -0.105 4.105 6 C -0.158 4.158 7 C -0.186 4.186 8 O -0.360 6.360 9 Si 0.808 3.192 10 H -0.181 1.181 11 H -0.201 1.201 12 H -0.172 1.172 13 C -0.065 4.065 14 C -0.098 4.098 15 C -0.045 4.045 16 C -0.151 4.151 17 C -0.116 4.116 18 C -0.421 4.421 19 Si 1.311 2.689 20 C -0.568 4.568 21 C -0.567 4.567 22 C -0.568 4.568 23 C -0.117 4.117 24 C -0.137 4.137 25 H 0.084 0.916 26 H 0.132 0.868 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.157 0.843 30 H 0.138 0.862 31 H 0.237 0.763 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.154 0.846 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.275 -0.495 0.417 2.365 hybrid contribution -0.666 -0.012 -0.348 0.751 sum -2.941 -0.506 0.068 2.985 Atomic orbital electron populations 1.23366 0.76580 1.05495 1.02398 1.86128 1.23150 1.26490 1.88072 1.19197 0.91452 0.85087 0.95556 1.21370 1.01313 0.91378 1.08205 1.21113 0.93959 0.97949 0.97493 1.20251 0.93600 0.96238 1.05673 1.25003 1.04426 0.98585 0.90619 1.86486 1.38732 1.95130 1.15685 0.85206 0.76461 0.76353 0.81178 1.18077 1.20081 1.17208 1.20974 1.00282 0.89621 0.95579 1.18392 0.90030 0.93636 1.07741 1.18734 0.95726 0.93308 0.96688 1.21461 0.95938 0.98994 0.98712 1.21297 0.98757 0.93031 0.98562 1.28029 1.04480 1.12734 0.96810 0.77218 0.64175 0.61368 0.66151 1.26278 1.07534 1.12400 1.10605 1.26251 1.18599 1.05493 1.06393 1.26259 1.04756 1.06868 1.18901 1.21278 0.94995 0.96817 0.98636 1.21323 0.99652 0.94172 0.98546 0.91624 0.86799 0.91380 0.82864 0.84326 0.86155 0.76282 0.84722 0.85900 0.84326 0.91486 0.90573 0.91530 0.91278 0.90574 0.90945 0.91031 0.90560 0.91311 0.84592 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.33 -1.75 8.87 -91.81 -0.81 -2.57 16 3 C 0.13 0.78 6.60 22.73 0.15 0.93 16 4 C -0.20 -0.41 9.03 22.34 0.20 -0.21 16 5 C -0.09 -0.11 8.66 22.29 0.19 0.08 16 6 C -0.16 -0.37 5.35 -19.88 -0.11 -0.48 16 7 C -0.08 0.01 2.80 71.24 0.20 0.20 16 8 O -0.55 -0.70 12.83 -148.98 -1.91 -2.61 16 9 Si 0.98 -1.23 25.13 68.60 1.72 0.49 16 10 H -0.26 0.08 7.11 99.48 0.71 0.78 16 11 H -0.28 -0.65 7.11 99.48 0.71 0.06 16 12 H -0.25 0.50 7.04 99.48 0.70 1.20 16 13 C -0.05 -0.24 9.14 22.47 0.21 -0.03 16 14 C -0.10 -0.71 5.48 -19.96 -0.11 -0.82 16 15 C -0.04 -0.37 5.27 -20.05 -0.11 -0.47 16 16 C -0.13 -0.85 9.51 22.49 0.21 -0.64 16 17 C -0.10 -0.36 9.28 22.24 0.21 -0.15 16 18 C -0.38 -0.84 4.60 22.31 0.10 -0.74 16 19 Si 1.12 -4.38 12.31 68.60 0.84 -3.53 16 20 C -0.46 0.90 8.65 113.37 0.98 1.89 16 21 C -0.46 1.36 8.52 113.37 0.97 2.33 16 22 C -0.46 1.30 8.52 113.37 0.97 2.27 16 23 C -0.10 -0.42 9.28 22.24 0.21 -0.21 16 24 C -0.12 -0.89 8.79 22.49 0.20 -0.69 16 25 H 0.07 -0.30 7.67 -2.39 -0.02 -0.32 16 26 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 27 H 0.07 -0.34 7.65 -2.39 -0.02 -0.36 16 28 H 0.15 -0.46 6.30 -2.91 -0.02 -0.47 16 29 H 0.14 -0.34 4.84 -2.91 -0.01 -0.36 16 30 H 0.12 -0.15 7.96 -2.39 -0.02 -0.16 16 31 H 0.39 -1.99 8.70 -74.06 -0.64 -2.63 16 32 H 0.13 0.58 8.04 -2.91 -0.02 0.56 16 33 H 0.12 0.54 8.04 -2.91 -0.02 0.52 16 34 H 0.14 -0.14 7.40 -2.91 -0.02 -0.16 16 35 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 36 H 0.08 -0.23 7.96 -2.38 -0.02 -0.25 16 37 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 38 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 39 H 0.08 -0.28 7.96 -2.38 -0.02 -0.30 16 40 H 0.07 -0.24 7.67 -2.38 -0.02 -0.26 16 41 H 0.07 -0.22 7.67 -2.39 -0.02 -0.24 16 42 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 43 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 44 H 0.14 -0.03 7.40 -2.91 -0.02 -0.05 16 45 H 0.11 0.81 7.71 -2.91 -0.02 0.79 16 Total: 0.00 -13.49 370.61 6.50 -6.98 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: 1.08 Total: -3.11 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.58 Total: 4.34 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -2.73 Total: -5.18 kcal Atomic # 14 Polarization: -5.60 SS G_CDS: 2.57 Total: -3.04 kcal Total: -13.49 6.50 -6.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.935 kcal (2) G-P(sol) polarization free energy of solvation -13.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds