Wall clock time and date at job start Mon Mar 8 2021 09:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.46910 * 2 1 4 4 C 1.86293 * 109.47351 * 239.99966 * 2 1 3 5 5 C 1.86799 * 109.47007 * 119.99586 * 2 1 3 6 6 C 1.38327 * 119.87398 * 90.00202 * 5 2 1 7 7 C 1.38018 * 120.12107 * 180.02562 * 6 5 2 8 8 C 1.39346 * 119.87499 * 359.97438 * 7 6 5 9 9 C 1.48363 * 120.12110 * 179.97438 * 8 7 6 10 10 C 1.39349 * 120.06198 * 236.72929 * 9 8 7 11 11 C 1.38314 * 119.93518 * 180.02562 * 10 9 8 12 12 C 1.39393 * 119.94905 * 0.02630 * 11 10 9 13 13 C 1.38679 * 120.02478 * 359.97438 * 12 11 10 14 14 C 1.37983 * 120.18569 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.99053 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47043 * 254.64170 * 15 14 13 17 17 Si 1.86303 * 109.47422 * 14.63860 * 15 14 13 18 18 H 1.48504 * 109.46792 * 60.00080 * 17 15 14 19 19 H 1.48498 * 109.47407 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46881 * 300.00581 * 17 15 14 21 21 O 1.36515 * 108.60039 * 179.97438 * 12 11 10 22 22 C 1.43974 * 105.49880 * 342.68402 * 21 12 11 23 23 O 1.36535 * 131.43030 * 179.97438 * 11 10 9 24 24 C 1.39363 * 119.76049 * 0.26105 * 8 7 6 25 25 C 1.38014 * 119.87023 * 359.46331 * 24 8 7 26 26 H 1.08999 * 109.47294 * 300.00494 * 1 2 3 27 27 H 1.09005 * 109.46715 * 60.00580 * 1 2 3 28 28 H 1.08994 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47275 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47226 * 299.99902 * 3 2 1 31 31 H 1.08999 * 109.47546 * 59.99660 * 3 2 1 32 32 H 1.09003 * 109.46999 * 299.99916 * 4 2 1 33 33 H 1.08996 * 109.47478 * 60.00180 * 4 2 1 34 34 H 1.09001 * 109.47276 * 180.02562 * 4 2 1 35 35 H 1.08003 * 119.93888 * 359.97438 * 6 5 2 36 36 H 1.08003 * 120.06027 * 180.02562 * 7 6 5 37 37 H 1.08006 * 120.02919 * 0.02562 * 10 9 8 38 38 H 1.08001 * 119.91193 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47632 * 134.63879 * 15 14 13 40 40 H 0.96701 * 114.00383 * 180.02562 * 16 15 14 41 41 H 1.08999 * 110.56679 * 268.61626 * 22 21 12 42 42 H 1.08997 * 110.57240 * 145.75494 * 22 21 12 43 43 H 1.07989 * 120.06244 * 179.74472 * 24 8 7 44 44 H 1.07997 * 119.94220 * 180.25086 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5253 6 6 2.7154 -2.2440 1.4882 7 6 3.1749 -2.8998 2.6123 8 6 3.4079 -2.1856 3.7859 9 6 3.9014 -2.8851 4.9977 10 6 3.1828 -2.8085 6.1892 11 6 3.6455 -3.4612 7.3174 12 6 4.8300 -4.1940 7.2608 13 6 5.5435 -4.2690 6.0741 14 6 5.0850 -3.6191 4.9465 15 6 5.8636 -3.7040 3.6591 16 8 6.5390 -2.4660 3.4284 17 14 7.1135 -5.0803 3.7788 18 1 6.4116 -6.3669 4.0186 19 1 7.8812 -5.1636 2.5104 20 1 8.0443 -4.8072 4.9033 21 8 5.0664 -4.7353 8.4916 22 6 4.2363 -3.9930 9.4042 23 8 3.1417 -3.5441 8.5837 24 6 3.1701 -0.8128 3.8191 25 6 2.7161 -0.1664 2.6874 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1206 2.2704 0.8899 32 1 2.1208 -1.9059 -1.5210 33 1 2.1209 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.5340 -2.7967 0.5782 36 1 3.3543 -3.9644 2.5822 37 1 2.2655 -2.2399 6.2316 38 1 6.4608 -4.8376 6.0322 39 1 5.1804 -3.9045 2.8338 40 1 7.0611 -2.4485 2.6147 41 1 4.7820 -3.1427 9.8131 42 1 3.8751 -4.6384 10.2049 43 1 3.3451 -0.2552 4.7271 44 1 2.5353 0.8981 2.7106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:04:33 Heat of formation + Delta-G solvation = -81.278953 kcal Electronic energy + Delta-G solvation = -25779.613020 eV Core-core repulsion = 22172.367502 eV Total energy + Delta-G solvation = -3607.245518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.17519 -40.64071 -38.82901 -37.31924 -37.22566 -33.20052 -32.46483 -31.70975 -29.87173 -29.29268 -28.43416 -28.39525 -27.40690 -26.13808 -24.46262 -23.30078 -22.83660 -22.12831 -19.02096 -18.72741 -18.61968 -18.33854 -17.52915 -16.87999 -16.33547 -15.93991 -15.79606 -15.51584 -15.34148 -14.99608 -14.83136 -14.53729 -14.27902 -14.18932 -14.07752 -14.02480 -13.94024 -13.85975 -13.76392 -13.46866 -13.25805 -13.23318 -13.18551 -13.08677 -12.69742 -12.25176 -12.08369 -12.01303 -11.83215 -11.61896 -11.00017 -10.89025 -10.80055 -10.31535 -10.01554 -9.69061 -9.57689 -8.86725 -0.18678 0.07733 0.51781 0.61815 1.08785 1.39783 1.45393 1.69440 1.75016 1.86940 1.87033 1.97924 2.38113 2.43787 2.57050 3.00098 3.37097 3.39041 3.65526 3.68312 3.88575 3.94405 4.02823 4.06530 4.16641 4.19587 4.32213 4.47712 4.55953 4.68999 4.71271 4.73062 4.76253 4.77422 4.77754 4.78114 4.84948 4.97155 5.01351 5.12006 5.13542 5.21307 5.34955 5.44436 5.52138 5.55122 5.57567 5.68137 5.70876 6.07502 6.17721 6.57889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.367 4.367 6 C -0.087 4.087 7 C -0.119 4.119 8 C -0.025 4.025 9 C -0.011 4.011 10 C -0.087 4.087 11 C 0.042 3.958 12 C 0.040 3.960 13 C -0.102 4.102 14 C -0.052 4.052 15 C -0.079 4.079 16 O -0.536 6.536 17 Si 0.933 3.067 18 H -0.245 1.245 19 H -0.251 1.251 20 H -0.245 1.245 21 O -0.306 6.306 22 C 0.213 3.787 23 O -0.306 6.306 24 C -0.109 4.109 25 C -0.085 4.085 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.084 0.916 40 H 0.380 0.620 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 0.712 -2.437 2.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.409 4.409 6 C -0.105 4.105 7 C -0.137 4.137 8 C -0.025 4.025 9 C -0.012 4.012 10 C -0.106 4.106 11 C -0.003 4.003 12 C -0.005 4.005 13 C -0.120 4.120 14 C -0.053 4.053 15 C -0.189 4.189 16 O -0.341 6.341 17 Si 0.755 3.245 18 H -0.169 1.169 19 H -0.175 1.175 20 H -0.169 1.169 21 O -0.222 6.222 22 C 0.101 3.899 23 O -0.222 6.222 24 C -0.127 4.127 25 C -0.103 4.103 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.227 0.773 41 H 0.105 0.895 42 H 0.152 0.848 43 H 0.138 0.862 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.197 0.022 -1.568 1.581 hybrid contribution 0.055 0.073 0.106 0.140 sum 0.253 0.094 -1.463 1.487 Atomic orbital electron populations 1.26134 1.20588 1.04546 1.04439 0.78177 0.66797 0.66126 0.63838 1.26142 1.06481 1.18626 1.04503 1.26132 1.06446 1.08025 1.15077 1.27376 1.03959 0.99459 1.10127 1.20973 0.97406 0.94607 0.97521 1.21215 1.00377 0.99501 0.92573 1.18476 0.98783 0.93301 0.91941 1.18273 0.93850 0.96844 0.92222 1.20069 1.01634 1.00118 0.88772 1.19672 0.93179 1.00151 0.87295 1.19660 0.95652 0.97165 0.87988 1.19838 1.00056 1.02826 0.89319 1.18897 0.94774 0.98188 0.93415 1.24764 1.01155 0.96161 0.96832 1.86530 1.67114 1.33542 1.46964 0.85948 0.79393 0.77512 0.81635 1.16854 1.17501 1.16890 1.87393 1.64201 1.55618 1.15023 1.25704 0.79493 0.94551 0.90133 1.87406 1.34787 1.84109 1.15888 1.21234 0.99349 0.93288 0.98842 1.20990 0.97149 0.99588 0.92550 0.91188 0.91120 0.91189 0.91037 0.91047 0.91195 0.91196 0.91031 0.91050 0.86018 0.86099 0.84081 0.84462 0.89799 0.77325 0.89492 0.84754 0.86232 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.70 8.65 101.05 0.87 1.57 16 2 Si 1.06 -2.86 12.31 -169.99 -2.09 -4.95 16 3 C -0.45 0.83 8.52 101.05 0.86 1.69 16 4 C -0.45 0.96 8.52 101.05 0.86 1.82 16 5 C -0.37 0.18 4.60 -39.52 -0.18 -0.01 16 6 C -0.09 0.02 9.28 -39.63 -0.37 -0.35 16 7 C -0.12 -0.08 7.95 -39.25 -0.31 -0.39 16 8 C -0.02 -0.04 4.84 -104.90 -0.51 -0.55 16 9 C -0.01 -0.03 5.40 -104.90 -0.57 -0.59 16 10 C -0.09 -0.22 9.63 -39.14 -0.38 -0.59 16 11 C 0.04 0.14 7.14 -39.12 -0.28 -0.14 16 12 C 0.04 0.15 7.15 -38.99 -0.28 -0.13 16 13 C -0.10 -0.28 8.66 -39.51 -0.34 -0.63 16 14 C -0.05 -0.12 5.30 -104.30 -0.55 -0.67 16 15 C -0.08 -0.02 2.05 36.00 0.07 0.06 16 16 O -0.54 -0.28 12.78 -35.23 -0.45 -0.73 16 17 Si 0.93 -0.16 25.48 -169.99 -4.33 -4.49 16 18 H -0.25 -0.13 7.11 56.52 0.40 0.28 16 19 H -0.25 0.10 7.11 56.52 0.40 0.50 16 20 H -0.25 -0.26 6.74 56.52 0.38 0.12 16 21 O -0.31 -0.99 11.40 -45.74 -0.52 -1.51 16 22 C 0.21 0.07 8.89 101.05 0.90 0.97 16 23 O -0.31 -0.94 11.40 -45.80 -0.52 -1.46 16 24 C -0.11 -0.16 9.62 -39.25 -0.38 -0.53 16 25 C -0.08 -0.03 9.28 -39.63 -0.37 -0.40 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 32 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.12 -0.27 7.40 -52.48 -0.39 -0.66 16 36 H 0.12 -0.09 6.99 -52.48 -0.37 -0.46 16 37 H 0.14 0.15 8.06 -52.48 -0.42 -0.27 16 38 H 0.14 0.23 4.87 -52.49 -0.26 -0.03 16 39 H 0.08 -0.11 4.92 -51.93 -0.26 -0.36 16 40 H 0.38 -1.39 8.74 45.56 0.40 -0.99 16 41 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 42 H 0.14 -0.35 8.14 -51.93 -0.42 -0.77 16 43 H 0.12 0.09 8.06 -52.49 -0.42 -0.33 16 44 H 0.12 -0.17 7.40 -52.49 -0.39 -0.56 16 LS Contribution 363.61 15.07 5.48 5.48 Total: 0.00 -6.62 363.61 -8.83 -15.45 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: -5.46 Total: -8.92 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.94 Total: 1.14 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: -1.49 Total: -3.71 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: -6.42 Total: -9.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -6.62 -8.83 -15.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.828 kcal (2) G-P(sol) polarization free energy of solvation -6.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds