Wall clock time and date at job start Mon Mar 8 2021 09:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.46910 * 2 1 4 4 C 1.86293 * 109.47351 * 239.99966 * 2 1 3 5 5 C 1.86799 * 109.47007 * 119.99586 * 2 1 3 6 6 C 1.38327 * 119.87398 * 90.00202 * 5 2 1 7 7 C 1.38018 * 120.12107 * 180.02562 * 6 5 2 8 8 C 1.39346 * 119.87499 * 359.97438 * 7 6 5 9 9 C 1.48363 * 120.12110 * 179.97438 * 8 7 6 10 10 C 1.39349 * 120.06198 * 236.72929 * 9 8 7 11 11 C 1.38314 * 119.93518 * 180.02562 * 10 9 8 12 12 C 1.39393 * 119.94905 * 0.02630 * 11 10 9 13 13 C 1.38679 * 120.02478 * 359.97438 * 12 11 10 14 14 C 1.37983 * 120.18569 * 0.02562 * 13 12 11 15 15 C 1.50694 * 119.99053 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47043 * 254.64170 * 15 14 13 17 17 Si 1.86303 * 109.47422 * 14.63860 * 15 14 13 18 18 H 1.48504 * 109.46792 * 60.00080 * 17 15 14 19 19 H 1.48498 * 109.47407 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46881 * 300.00581 * 17 15 14 21 21 O 1.36515 * 108.60039 * 179.97438 * 12 11 10 22 22 C 1.43974 * 105.49880 * 342.68402 * 21 12 11 23 23 O 1.36535 * 131.43030 * 179.97438 * 11 10 9 24 24 C 1.39363 * 119.76049 * 0.26105 * 8 7 6 25 25 C 1.38014 * 119.87023 * 359.46331 * 24 8 7 26 26 H 1.08999 * 109.47294 * 300.00494 * 1 2 3 27 27 H 1.09005 * 109.46715 * 60.00580 * 1 2 3 28 28 H 1.08994 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47275 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47226 * 299.99902 * 3 2 1 31 31 H 1.08999 * 109.47546 * 59.99660 * 3 2 1 32 32 H 1.09003 * 109.46999 * 299.99916 * 4 2 1 33 33 H 1.08996 * 109.47478 * 60.00180 * 4 2 1 34 34 H 1.09001 * 109.47276 * 180.02562 * 4 2 1 35 35 H 1.08003 * 119.93888 * 359.97438 * 6 5 2 36 36 H 1.08003 * 120.06027 * 180.02562 * 7 6 5 37 37 H 1.08006 * 120.02919 * 0.02562 * 10 9 8 38 38 H 1.08001 * 119.91193 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47632 * 134.63879 * 15 14 13 40 40 H 0.96701 * 114.00383 * 180.02562 * 16 15 14 41 41 H 1.08999 * 110.56679 * 268.61626 * 22 21 12 42 42 H 1.08997 * 110.57240 * 145.75494 * 22 21 12 43 43 H 1.07989 * 120.06244 * 179.74472 * 24 8 7 44 44 H 1.07997 * 119.94220 * 180.25086 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5253 6 6 2.7154 -2.2440 1.4882 7 6 3.1749 -2.8998 2.6123 8 6 3.4079 -2.1856 3.7859 9 6 3.9014 -2.8851 4.9977 10 6 3.1828 -2.8085 6.1892 11 6 3.6455 -3.4612 7.3174 12 6 4.8300 -4.1940 7.2608 13 6 5.5435 -4.2690 6.0741 14 6 5.0850 -3.6191 4.9465 15 6 5.8636 -3.7040 3.6591 16 8 6.5390 -2.4660 3.4284 17 14 7.1135 -5.0803 3.7788 18 1 6.4116 -6.3669 4.0186 19 1 7.8812 -5.1636 2.5104 20 1 8.0443 -4.8072 4.9033 21 8 5.0664 -4.7353 8.4916 22 6 4.2363 -3.9930 9.4042 23 8 3.1417 -3.5441 8.5837 24 6 3.1701 -0.8128 3.8191 25 6 2.7161 -0.1664 2.6874 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1206 2.2704 0.8899 32 1 2.1208 -1.9059 -1.5210 33 1 2.1209 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.5340 -2.7967 0.5782 36 1 3.3543 -3.9644 2.5822 37 1 2.2655 -2.2399 6.2316 38 1 6.4608 -4.8376 6.0322 39 1 5.1804 -3.9045 2.8338 40 1 7.0611 -2.4485 2.6147 41 1 4.7820 -3.1427 9.8131 42 1 3.8751 -4.6384 10.2049 43 1 3.3451 -0.2552 4.7271 44 1 2.5353 0.8981 2.7106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:04:32 Heat of formation + Delta-G solvation = -73.761226 kcal Electronic energy + Delta-G solvation = -25779.287027 eV Core-core repulsion = 22172.367502 eV Total energy + Delta-G solvation = -3606.919525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.31220 -40.69263 -38.86113 -37.45673 -37.28405 -33.27036 -32.55612 -31.71416 -29.85492 -29.19469 -28.24412 -28.22147 -27.45190 -26.21281 -24.59066 -23.30431 -22.92499 -22.19145 -19.10703 -18.85472 -18.68900 -18.37664 -17.58519 -16.91705 -16.38864 -15.97279 -15.82188 -15.58462 -15.43403 -15.07365 -14.94506 -14.53100 -14.22146 -14.15362 -14.06167 -13.99230 -13.89752 -13.83786 -13.67273 -13.39867 -13.25300 -13.07643 -13.06058 -12.91335 -12.69018 -12.27907 -12.10722 -12.04013 -11.87580 -11.64759 -10.85624 -10.72344 -10.70092 -10.30007 -10.15388 -9.69054 -9.63763 -8.98771 -0.31761 -0.09030 0.47688 0.61792 1.09050 1.40896 1.44886 1.59895 1.86228 1.91721 2.08784 2.14035 2.26110 2.35587 2.72846 3.00936 3.22457 3.36774 3.60505 3.67943 3.84980 3.92966 3.97184 4.07015 4.16469 4.19570 4.28259 4.43458 4.59756 4.71031 4.74651 4.80651 4.88628 4.89168 4.92246 4.93300 4.94154 4.95918 4.96407 5.03608 5.07717 5.18267 5.27744 5.54229 5.63851 5.64997 5.69271 5.72338 5.77258 5.92481 6.20401 6.80493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.128 2.872 3 C -0.464 4.464 4 C -0.460 4.460 5 C -0.377 4.377 6 C -0.093 4.093 7 C -0.127 4.127 8 C -0.039 4.039 9 C -0.014 4.014 10 C -0.093 4.093 11 C 0.029 3.971 12 C 0.023 3.977 13 C -0.112 4.112 14 C -0.059 4.059 15 C -0.078 4.078 16 O -0.552 6.552 17 Si 0.962 3.038 18 H -0.257 1.257 19 H -0.242 1.242 20 H -0.267 1.267 21 O -0.322 6.322 22 C 0.204 3.796 23 O -0.321 6.321 24 C -0.125 4.125 25 C -0.095 4.095 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.100 0.900 40 H 0.397 0.603 41 H 0.105 0.895 42 H 0.163 0.837 43 H 0.117 0.883 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 0.852 -3.725 3.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.571 4.571 4 C -0.567 4.567 5 C -0.416 4.416 6 C -0.110 4.110 7 C -0.145 4.145 8 C -0.039 4.039 9 C -0.014 4.014 10 C -0.111 4.111 11 C -0.016 4.016 12 C -0.021 4.021 13 C -0.130 4.130 14 C -0.059 4.059 15 C -0.187 4.187 16 O -0.361 6.361 17 Si 0.785 3.215 18 H -0.181 1.181 19 H -0.165 1.165 20 H -0.192 1.192 21 O -0.239 6.239 22 C 0.094 3.906 23 O -0.237 6.237 24 C -0.143 4.143 25 C -0.113 4.113 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.247 0.753 41 H 0.122 0.878 42 H 0.180 0.820 43 H 0.135 0.865 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.088 0.165 -2.861 2.867 hybrid contribution 0.080 0.064 0.523 0.533 sum 0.168 0.229 -2.337 2.355 Atomic orbital electron populations 1.26325 1.21998 1.04424 1.04373 0.77138 0.64907 0.64508 0.61971 1.26313 1.06459 1.19704 1.04643 1.26243 1.06564 1.08497 1.15405 1.27942 1.03125 0.99704 1.10836 1.21308 0.96769 0.94932 0.98033 1.21425 1.00422 1.00163 0.92511 1.18537 0.99722 0.93529 0.92099 1.18451 0.93825 0.96673 0.92489 1.20245 1.01985 1.00127 0.88779 1.19842 0.93425 1.00614 0.87705 1.19871 0.96108 0.97711 0.88421 1.20039 1.00349 1.03182 0.89466 1.19191 0.94937 0.97717 0.94095 1.24801 1.01425 0.96178 0.96339 1.86485 1.67545 1.33653 1.48407 0.85546 0.78426 0.76495 0.81006 1.18073 1.16489 1.19216 1.87351 1.64925 1.56348 1.15275 1.26157 0.79006 0.95708 0.89744 1.87365 1.35978 1.84376 1.16002 1.21366 1.00116 0.93467 0.99395 1.21248 0.97021 1.00469 0.92515 0.91616 0.90864 0.91349 0.91251 0.90848 0.91178 0.90718 0.90871 0.91024 0.83849 0.85029 0.83346 0.83962 0.88252 0.75276 0.87756 0.81954 0.86466 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.77 8.65 113.37 0.98 2.75 16 2 Si 1.13 -7.29 12.31 68.60 0.84 -6.44 16 3 C -0.46 2.07 8.52 113.37 0.97 3.03 16 4 C -0.46 2.64 8.52 113.37 0.97 3.61 16 5 C -0.38 0.63 4.60 22.31 0.10 0.73 16 6 C -0.09 0.13 9.28 22.24 0.21 0.33 16 7 C -0.13 -0.14 7.95 22.48 0.18 0.04 16 8 C -0.04 -0.16 4.84 -20.04 -0.10 -0.26 16 9 C -0.01 -0.08 5.40 -20.04 -0.11 -0.19 16 10 C -0.09 -0.61 9.63 22.56 0.22 -0.39 16 11 C 0.03 0.24 7.14 22.57 0.16 0.41 16 12 C 0.02 0.21 7.15 22.65 0.16 0.37 16 13 C -0.11 -0.80 8.66 22.31 0.19 -0.60 16 14 C -0.06 -0.32 5.30 -19.65 -0.10 -0.43 16 15 C -0.08 -0.04 2.05 71.23 0.15 0.10 16 16 O -0.55 -0.58 12.78 -148.98 -1.90 -2.48 16 17 Si 0.96 -0.16 25.48 68.60 1.75 1.59 16 18 H -0.26 -0.40 7.11 99.48 0.71 0.31 16 19 H -0.24 0.43 7.11 99.48 0.71 1.14 16 20 H -0.27 -0.88 6.74 99.48 0.67 -0.20 16 21 O -0.32 -2.51 11.40 -76.23 -0.87 -3.38 16 22 C 0.20 0.27 8.89 113.37 1.01 1.28 16 23 O -0.32 -2.36 11.40 -76.46 -0.87 -3.23 16 24 C -0.13 -0.45 9.62 22.49 0.22 -0.24 16 25 C -0.09 -0.06 9.28 22.24 0.21 0.15 16 26 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 27 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 30 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 31 H 0.07 -0.31 7.67 -2.39 -0.02 -0.33 16 32 H 0.07 -0.48 7.67 -2.39 -0.02 -0.50 16 33 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 34 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 35 H 0.14 -0.90 7.40 -2.91 -0.02 -0.92 16 36 H 0.13 -0.25 6.99 -2.91 -0.02 -0.27 16 37 H 0.15 0.58 8.06 -2.91 -0.02 0.55 16 38 H 0.14 0.71 4.87 -2.91 -0.01 0.70 16 39 H 0.10 -0.29 4.92 -2.39 -0.01 -0.30 16 40 H 0.40 -3.13 8.74 -74.06 -0.65 -3.77 16 41 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.16 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H 0.12 0.35 8.06 -2.92 -0.02 0.32 16 44 H 0.14 -0.41 7.40 -2.91 -0.02 -0.43 16 Total: 0.00 -15.84 363.61 5.44 -10.40 By element: Atomic # 1 Polarization: -8.24 SS G_CDS: 1.09 Total: -7.15 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.40 Total: 10.70 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -3.65 Total: -9.10 kcal Atomic # 14 Polarization: -7.45 SS G_CDS: 2.59 Total: -4.85 kcal Total: -15.84 5.44 -10.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.364 kcal (2) G-P(sol) polarization free energy of solvation -15.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds