Wall clock time and date at job start Mon Mar 8 2021 09:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86294 * 109.47670 * 2 1 4 4 C 1.86307 * 109.47209 * 240.00051 * 2 1 3 5 5 C 1.86805 * 109.47230 * 120.00293 * 2 1 3 6 6 C 1.38324 * 119.87435 * 89.99427 * 5 2 1 7 7 C 1.38018 * 120.11998 * 179.97438 * 6 5 2 8 8 C 1.39353 * 119.87339 * 0.02562 * 7 6 5 9 9 C 1.48367 * 120.12169 * 180.02562 * 8 7 6 10 10 C 1.39366 * 120.06169 * 359.97438 * 9 8 7 11 11 C 1.37924 * 119.93257 * 180.23595 * 10 9 8 12 12 C 1.38819 * 120.06527 * 359.49417 * 11 10 9 13 13 O 1.35864 * 119.93555 * 180.26079 * 12 11 10 14 14 C 1.42899 * 117.00214 * 0.24188 * 13 12 11 15 15 F 1.39899 * 109.47417 * 300.00504 * 14 13 12 16 16 F 1.39905 * 109.46621 * 60.00717 * 14 13 12 17 17 C 1.38851 * 120.12708 * 0.50471 * 12 11 10 18 18 C 1.50704 * 119.96862 * 179.77137 * 17 12 11 19 19 O 1.42901 * 109.47083 * 284.98389 * 18 17 12 20 20 Si 1.86297 * 109.47289 * 164.98041 * 18 17 12 21 21 H 1.48491 * 109.47292 * 60.00261 * 20 18 17 22 22 H 1.48504 * 109.47040 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46843 * 299.99866 * 20 18 17 24 24 C 1.37887 * 120.06748 * 359.75049 * 17 12 11 25 25 C 1.39352 * 119.76141 * 0.26589 * 8 7 6 26 26 C 1.38022 * 119.87097 * 359.47713 * 25 8 7 27 27 H 1.09001 * 109.47152 * 299.99945 * 1 2 3 28 28 H 1.09006 * 109.47210 * 59.99781 * 1 2 3 29 29 H 1.08998 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47554 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47379 * 300.00604 * 3 2 1 32 32 H 1.09001 * 109.46788 * 59.99832 * 3 2 1 33 33 H 1.08998 * 109.46926 * 300.00262 * 4 2 1 34 34 H 1.08998 * 109.47117 * 59.99836 * 4 2 1 35 35 H 1.08997 * 109.47262 * 180.02562 * 4 2 1 36 36 H 1.08000 * 119.94039 * 359.97438 * 6 5 2 37 37 H 1.07996 * 120.06327 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.03139 * 359.95355 * 10 9 8 39 39 H 1.07998 * 119.97004 * 179.72485 * 11 10 9 40 40 H 1.08995 * 109.47478 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.46784 * 44.97666 * 18 17 12 42 42 H 0.96696 * 114.00138 * 59.99720 * 19 18 17 43 43 H 1.08006 * 120.03103 * 180.02562 * 24 17 12 44 44 H 1.07998 * 120.06450 * 179.72328 * 25 8 7 45 45 H 1.07989 * 119.93918 * 180.22711 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7563 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7152 -2.2442 1.4880 7 6 3.1758 -2.8999 2.6118 8 6 3.4090 -2.1857 3.7854 9 6 3.9047 -2.8849 4.9965 10 6 4.1378 -4.2586 4.9632 11 6 4.5940 -4.9067 6.0920 12 6 4.8308 -4.1904 7.2574 13 8 5.2852 -4.8307 8.3662 14 6 5.5017 -6.2391 8.2592 15 9 4.2993 -6.8718 7.9259 16 9 6.4525 -6.4904 7.2640 17 6 4.5995 -2.8218 7.2934 18 6 4.8530 -2.0486 8.5619 19 8 3.8074 -2.3147 9.4989 20 14 4.8956 -0.2257 8.1800 21 1 3.5933 0.1890 7.5995 22 1 5.1459 0.5361 9.4299 23 1 5.9822 0.0508 7.2063 24 6 4.1385 -2.1693 6.1696 25 6 3.1703 -0.8132 3.8189 26 6 2.7148 -0.1669 2.6877 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5741 1.7563 0.0005 31 1 2.1208 2.2703 -0.8899 32 1 2.1208 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1207 -0.3644 -2.4112 35 1 3.5740 -0.8786 -1.5210 36 1 2.5337 -2.7968 0.5780 37 1 3.3551 -3.9645 2.5816 38 1 3.9572 -4.8157 4.0558 39 1 4.7706 -5.9719 6.0683 40 1 5.8627 -6.6247 9.2126 41 1 5.8089 -2.3531 8.9880 42 1 3.7267 -3.2466 9.7440 43 1 3.9591 -1.1046 6.1981 44 1 3.3451 -0.2557 4.7272 45 1 2.5328 0.8973 2.7114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:04:39 Heat of formation + Delta-G solvation = -175.876737 kcal Electronic energy + Delta-G solvation = -28514.200058 eV Core-core repulsion = 24255.315235 eV Total energy + Delta-G solvation = -4258.884823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.47960 -48.46229 -41.56759 -40.06473 -38.50801 -37.48021 -33.39298 -32.92686 -31.78813 -29.90002 -29.32777 -28.46039 -28.41089 -27.37897 -26.72557 -24.33148 -23.87486 -22.60702 -21.60654 -20.20375 -19.22935 -19.04764 -18.51676 -18.05975 -17.37866 -16.63044 -16.50726 -15.94740 -15.78883 -15.51719 -15.42489 -15.19383 -15.04531 -14.99464 -14.78589 -14.40176 -14.25286 -14.24597 -14.17060 -14.07358 -13.88537 -13.84772 -13.79197 -13.33496 -13.28806 -13.23042 -13.10968 -12.92833 -12.86210 -12.52299 -12.21476 -11.94454 -11.72699 -11.22808 -11.09891 -11.05361 -10.90697 -10.82709 -10.27923 -10.07679 -9.80361 -8.82341 -0.40639 0.11829 0.55801 0.75994 1.17853 1.34937 1.50950 1.53843 1.71375 1.84814 1.94583 1.96389 2.33823 2.48826 2.54613 3.09898 3.14536 3.42877 3.48085 3.55395 3.60982 3.84068 3.94064 4.00297 4.08650 4.14424 4.22434 4.40411 4.50215 4.63505 4.69637 4.70481 4.71549 4.74696 4.75902 4.76081 4.77489 4.93954 5.01364 5.05166 5.12499 5.24678 5.33536 5.42613 5.50570 5.50989 5.54024 5.63367 5.72735 5.87381 6.11630 6.55948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.369 4.369 6 C -0.084 4.084 7 C -0.121 4.121 8 C -0.035 4.035 9 C -0.059 4.059 10 C -0.068 4.068 11 C -0.182 4.182 12 C 0.118 3.882 13 O -0.321 6.321 14 C 0.412 3.588 15 F -0.196 7.196 16 F -0.196 7.196 17 C -0.124 4.124 18 C -0.086 4.086 19 O -0.535 6.535 20 Si 1.008 2.992 21 H -0.250 1.250 22 H -0.252 1.252 23 H -0.245 1.245 24 C -0.082 4.082 25 C -0.124 4.124 26 C -0.084 4.084 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.185 0.815 41 H 0.079 0.921 42 H 0.369 0.631 43 H 0.137 0.863 44 H 0.120 0.880 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.914 -0.643 -0.745 1.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.411 4.411 6 C -0.102 4.102 7 C -0.139 4.139 8 C -0.035 4.035 9 C -0.060 4.060 10 C -0.086 4.086 11 C -0.200 4.200 12 C 0.075 3.925 13 O -0.238 6.238 14 C 0.322 3.678 15 F -0.178 7.178 16 F -0.178 7.178 17 C -0.125 4.125 18 C -0.194 4.194 19 O -0.340 6.340 20 Si 0.828 3.172 21 H -0.174 1.174 22 H -0.176 1.176 23 H -0.169 1.169 24 C -0.099 4.099 25 C -0.142 4.142 26 C -0.102 4.102 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.202 0.798 41 H 0.097 0.903 42 H 0.216 0.784 43 H 0.154 0.846 44 H 0.138 0.862 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.910 0.879 -0.763 1.478 hybrid contribution 0.141 -1.814 0.098 1.823 sum 1.052 -0.936 -0.665 1.557 Atomic orbital electron populations 1.26127 1.20475 1.04580 1.04485 0.78184 0.66873 0.66140 0.63734 1.26135 1.06468 1.18563 1.04568 1.26134 1.06460 1.08040 1.15074 1.27448 1.03874 0.99513 1.10234 1.21018 0.96976 0.94611 0.97620 1.21286 1.00203 0.99724 0.92680 1.18701 0.99079 0.93356 0.92392 1.18740 1.01016 0.93191 0.93008 1.21088 0.96202 0.93364 0.97941 1.21511 1.04721 1.00918 0.92872 1.18679 0.96731 0.91546 0.85588 1.86579 1.80638 1.21064 1.35545 1.23427 0.74731 0.78153 0.91476 1.93119 1.48279 1.82258 1.94143 1.93119 1.64910 1.93664 1.66123 1.19548 1.04492 0.91015 0.97424 1.25260 0.93668 1.12831 0.87607 1.86706 1.54066 1.31403 1.61860 0.84554 0.80904 0.71198 0.80587 1.17373 1.17555 1.16858 1.21037 0.97363 1.00158 0.91360 1.21301 1.00363 0.93663 0.98847 1.21017 0.96956 0.99725 0.92490 0.91158 0.91055 0.91174 0.91045 0.90957 0.91165 0.91184 0.90961 0.91053 0.85900 0.85979 0.84627 0.84309 0.79841 0.90275 0.78362 0.84579 0.86226 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.59 8.65 101.05 0.87 1.47 16 2 Si 1.06 -2.52 12.31 -169.99 -2.09 -4.61 16 3 C -0.45 0.77 8.52 101.05 0.86 1.63 16 4 C -0.45 0.78 8.52 101.05 0.86 1.64 16 5 C -0.37 -0.02 4.60 -39.52 -0.18 -0.20 16 6 C -0.08 -0.04 9.28 -39.63 -0.37 -0.41 16 7 C -0.12 -0.16 9.43 -39.25 -0.37 -0.53 16 8 C -0.04 -0.08 5.88 -104.90 -0.62 -0.70 16 9 C -0.06 -0.14 5.88 -104.88 -0.62 -0.76 16 10 C -0.07 -0.11 9.42 -39.28 -0.37 -0.48 16 11 C -0.18 -0.33 8.24 -39.48 -0.33 -0.65 16 12 C 0.12 0.22 6.42 -39.14 -0.25 -0.03 16 13 O -0.32 -0.02 9.31 -19.31 -0.18 -0.20 16 14 C 0.41 -0.79 5.98 101.05 0.60 -0.19 16 15 F -0.20 0.01 15.56 2.25 0.04 0.05 16 16 F -0.20 -0.01 15.59 2.25 0.04 0.02 16 17 C -0.12 -0.26 5.27 -104.52 -0.55 -0.81 16 18 C -0.09 -0.10 2.33 36.01 0.08 -0.02 16 19 O -0.53 -0.98 12.65 -35.23 -0.45 -1.43 16 20 Si 1.01 0.88 25.74 -169.99 -4.38 -3.50 16 21 H -0.25 -0.30 6.73 56.52 0.38 0.08 16 22 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 23 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 24 C -0.08 -0.19 8.03 -39.28 -0.32 -0.50 16 25 C -0.12 -0.22 9.43 -39.25 -0.37 -0.59 16 26 C -0.08 -0.06 9.28 -39.63 -0.37 -0.43 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 33 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 36 H 0.12 -0.19 7.40 -52.49 -0.39 -0.58 16 37 H 0.12 -0.06 6.20 -52.49 -0.33 -0.38 16 38 H 0.14 -0.05 6.20 -52.49 -0.33 -0.38 16 39 H 0.14 0.15 5.08 -52.49 -0.27 -0.12 16 40 H 0.19 -1.21 8.14 -51.93 -0.42 -1.63 16 41 H 0.08 -0.01 7.82 -51.93 -0.41 -0.42 16 42 H 0.37 -0.21 8.60 45.56 0.39 0.18 16 43 H 0.14 0.16 3.02 -52.48 -0.16 0.00 16 44 H 0.12 0.06 6.20 -52.49 -0.33 -0.27 16 45 H 0.12 -0.17 7.40 -52.49 -0.39 -0.56 16 LS Contribution 374.40 15.07 5.64 5.64 Total: 0.00 -6.11 374.40 -7.92 -14.03 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: -5.12 Total: -8.47 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.42 Total: -1.53 kcal Atomic # 8 Polarization: -1.00 SS G_CDS: -0.63 Total: -1.63 kcal Atomic # 9 Polarization: 0.00 SS G_CDS: 0.07 Total: 0.07 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: -6.47 Total: -8.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -6.11 -7.92 -14.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.846 kcal (2) G-P(sol) polarization free energy of solvation -6.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds