Wall clock time and date at job start Mon Mar 8 2021 09:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86294 * 109.47670 * 2 1 4 4 C 1.86307 * 109.47209 * 240.00051 * 2 1 3 5 5 C 1.86805 * 109.47230 * 120.00293 * 2 1 3 6 6 C 1.38324 * 119.87435 * 89.99427 * 5 2 1 7 7 C 1.38018 * 120.11998 * 179.97438 * 6 5 2 8 8 C 1.39353 * 119.87339 * 0.02562 * 7 6 5 9 9 C 1.48367 * 120.12169 * 180.02562 * 8 7 6 10 10 C 1.39366 * 120.06169 * 359.97438 * 9 8 7 11 11 C 1.37924 * 119.93257 * 180.23595 * 10 9 8 12 12 C 1.38819 * 120.06527 * 359.49417 * 11 10 9 13 13 O 1.35864 * 119.93555 * 180.26079 * 12 11 10 14 14 C 1.42899 * 117.00214 * 0.24188 * 13 12 11 15 15 F 1.39899 * 109.47417 * 300.00504 * 14 13 12 16 16 F 1.39905 * 109.46621 * 60.00717 * 14 13 12 17 17 C 1.38851 * 120.12708 * 0.50471 * 12 11 10 18 18 C 1.50704 * 119.96862 * 179.77137 * 17 12 11 19 19 O 1.42901 * 109.47083 * 284.98389 * 18 17 12 20 20 Si 1.86297 * 109.47289 * 164.98041 * 18 17 12 21 21 H 1.48491 * 109.47292 * 60.00261 * 20 18 17 22 22 H 1.48504 * 109.47040 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46843 * 299.99866 * 20 18 17 24 24 C 1.37887 * 120.06748 * 359.75049 * 17 12 11 25 25 C 1.39352 * 119.76141 * 0.26589 * 8 7 6 26 26 C 1.38022 * 119.87097 * 359.47713 * 25 8 7 27 27 H 1.09001 * 109.47152 * 299.99945 * 1 2 3 28 28 H 1.09006 * 109.47210 * 59.99781 * 1 2 3 29 29 H 1.08998 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47554 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47379 * 300.00604 * 3 2 1 32 32 H 1.09001 * 109.46788 * 59.99832 * 3 2 1 33 33 H 1.08998 * 109.46926 * 300.00262 * 4 2 1 34 34 H 1.08998 * 109.47117 * 59.99836 * 4 2 1 35 35 H 1.08997 * 109.47262 * 180.02562 * 4 2 1 36 36 H 1.08000 * 119.94039 * 359.97438 * 6 5 2 37 37 H 1.07996 * 120.06327 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.03139 * 359.95355 * 10 9 8 39 39 H 1.07998 * 119.97004 * 179.72485 * 11 10 9 40 40 H 1.08995 * 109.47478 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.46784 * 44.97666 * 18 17 12 42 42 H 0.96696 * 114.00138 * 59.99720 * 19 18 17 43 43 H 1.08006 * 120.03103 * 180.02562 * 24 17 12 44 44 H 1.07998 * 120.06450 * 179.72328 * 25 8 7 45 45 H 1.07989 * 119.93918 * 180.22711 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7563 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7152 -2.2442 1.4880 7 6 3.1758 -2.8999 2.6118 8 6 3.4090 -2.1857 3.7854 9 6 3.9047 -2.8849 4.9965 10 6 4.1378 -4.2586 4.9632 11 6 4.5940 -4.9067 6.0920 12 6 4.8308 -4.1904 7.2574 13 8 5.2852 -4.8307 8.3662 14 6 5.5017 -6.2391 8.2592 15 9 4.2993 -6.8718 7.9259 16 9 6.4525 -6.4904 7.2640 17 6 4.5995 -2.8218 7.2934 18 6 4.8530 -2.0486 8.5619 19 8 3.8074 -2.3147 9.4989 20 14 4.8956 -0.2257 8.1800 21 1 3.5933 0.1890 7.5995 22 1 5.1459 0.5361 9.4299 23 1 5.9822 0.0508 7.2063 24 6 4.1385 -2.1693 6.1696 25 6 3.1703 -0.8132 3.8189 26 6 2.7148 -0.1669 2.6877 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5741 1.7563 0.0005 31 1 2.1208 2.2703 -0.8899 32 1 2.1208 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1207 -0.3644 -2.4112 35 1 3.5740 -0.8786 -1.5210 36 1 2.5337 -2.7968 0.5780 37 1 3.3551 -3.9645 2.5816 38 1 3.9572 -4.8157 4.0558 39 1 4.7706 -5.9719 6.0683 40 1 5.8627 -6.6247 9.2126 41 1 5.8089 -2.3531 8.9880 42 1 3.7267 -3.2466 9.7440 43 1 3.9591 -1.1046 6.1981 44 1 3.3451 -0.2557 4.7272 45 1 2.5328 0.8973 2.7114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:04:38 Heat of formation + Delta-G solvation = -166.782716 kcal Electronic energy + Delta-G solvation = -28513.805712 eV Core-core repulsion = 24255.315235 eV Total energy + Delta-G solvation = -4258.490477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.39044 -48.38672 -41.62032 -40.07413 -38.52412 -37.56834 -33.44637 -32.99823 -31.81277 -29.86768 -29.23622 -28.30116 -28.26612 -27.32963 -26.75999 -24.36125 -23.91774 -22.64258 -21.64690 -20.20593 -19.15028 -18.96432 -18.56208 -18.09324 -17.41066 -16.65662 -16.53938 -15.97864 -15.83793 -15.54637 -15.43299 -15.20009 -15.04742 -15.01731 -14.73033 -14.43027 -14.24397 -14.21839 -14.09403 -14.04472 -13.79918 -13.75843 -13.71598 -13.22287 -13.18213 -13.09473 -12.98186 -12.92512 -12.89244 -12.52505 -12.28799 -12.00232 -11.80174 -11.30566 -11.13859 -10.98517 -10.78153 -10.74989 -10.30762 -10.17644 -9.84492 -8.88927 -0.48198 0.00525 0.51730 0.70563 1.10602 1.41599 1.44564 1.47218 1.84906 1.87155 2.03509 2.07499 2.42711 2.49006 2.67388 3.05169 3.30879 3.46959 3.47554 3.56413 3.61351 3.80866 3.90180 3.96027 4.05282 4.11881 4.17278 4.36942 4.50787 4.59078 4.69282 4.84698 4.85044 4.86328 4.88943 4.89760 4.90614 4.92790 4.96354 4.97919 5.09820 5.19666 5.26374 5.45815 5.57966 5.59755 5.65865 5.68180 5.71670 5.81496 6.11116 6.57717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.461 4.461 5 C -0.381 4.381 6 C -0.095 4.095 7 C -0.133 4.133 8 C -0.054 4.054 9 C -0.070 4.070 10 C -0.074 4.074 11 C -0.190 4.190 12 C 0.112 3.888 13 O -0.321 6.321 14 C 0.406 3.594 15 F -0.208 7.208 16 F -0.209 7.209 17 C -0.134 4.134 18 C -0.086 4.086 19 O -0.548 6.548 20 Si 1.022 2.978 21 H -0.259 1.259 22 H -0.263 1.263 23 H -0.240 1.240 24 C -0.094 4.094 25 C -0.142 4.142 26 C -0.096 4.096 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.235 0.765 41 H 0.092 0.908 42 H 0.378 0.622 43 H 0.141 0.859 44 H 0.123 0.877 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -0.898 -1.114 1.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.568 4.568 5 C -0.420 4.420 6 C -0.112 4.112 7 C -0.151 4.151 8 C -0.054 4.054 9 C -0.070 4.070 10 C -0.091 4.091 11 C -0.209 4.209 12 C 0.068 3.932 13 O -0.239 6.239 14 C 0.317 3.683 15 F -0.190 7.190 16 F -0.191 7.191 17 C -0.135 4.135 18 C -0.194 4.194 19 O -0.355 6.355 20 Si 0.842 3.158 21 H -0.183 1.183 22 H -0.187 1.187 23 H -0.163 1.163 24 C -0.111 4.111 25 C -0.160 4.160 26 C -0.113 4.113 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.251 0.749 41 H 0.110 0.890 42 H 0.227 0.773 43 H 0.158 0.842 44 H 0.141 0.859 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.026 0.607 -1.118 1.635 hybrid contribution 0.088 -1.753 0.213 1.768 sum 1.115 -1.146 -0.905 1.837 Atomic orbital electron populations 1.26299 1.21712 1.04440 1.04515 0.77172 0.65116 0.64673 0.61673 1.26279 1.06432 1.19391 1.04855 1.26260 1.06424 1.08494 1.15632 1.28068 1.03056 0.99698 1.11145 1.21361 0.96640 0.95094 0.98129 1.21541 1.00312 1.00508 0.92748 1.18864 0.99945 0.93778 0.92792 1.18893 1.01295 0.93614 0.93230 1.21304 0.95928 0.93324 0.98571 1.21648 1.04967 1.01201 0.93071 1.18792 0.96546 0.91712 0.86122 1.86582 1.80324 1.22191 1.34800 1.24297 0.74023 0.77164 0.92834 1.93092 1.49197 1.82372 1.94364 1.93090 1.65315 1.93648 1.67046 1.19685 1.04701 0.91406 0.97681 1.25295 0.94059 1.12757 0.87273 1.86672 1.54421 1.32395 1.61976 0.84377 0.80536 0.70950 0.79928 1.18333 1.18705 1.16321 1.21201 0.97687 1.00579 0.91661 1.21521 1.00984 0.93868 0.99619 1.21331 0.96791 1.00767 0.92433 0.91517 0.90656 0.91419 0.91269 0.90635 0.90968 0.90847 0.90650 0.91257 0.83955 0.84811 0.83157 0.83891 0.74947 0.89001 0.77286 0.84180 0.85869 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.43 8.65 113.37 0.98 2.41 16 2 Si 1.13 -6.05 12.31 68.60 0.84 -5.21 16 3 C -0.46 1.84 8.52 113.37 0.97 2.81 16 4 C -0.46 1.99 8.52 113.37 0.97 2.96 16 5 C -0.38 -0.02 4.60 22.31 0.10 0.08 16 6 C -0.09 -0.09 9.28 22.24 0.21 0.12 16 7 C -0.13 -0.43 9.43 22.49 0.21 -0.22 16 8 C -0.05 -0.31 5.88 -20.04 -0.12 -0.43 16 9 C -0.07 -0.43 5.88 -20.03 -0.12 -0.54 16 10 C -0.07 -0.31 9.42 22.47 0.21 -0.10 16 11 C -0.19 -0.84 8.24 22.33 0.18 -0.65 16 12 C 0.11 0.49 6.42 22.56 0.14 0.64 16 13 O -0.32 0.01 9.31 -92.02 -0.86 -0.85 16 14 C 0.41 -1.82 5.98 113.37 0.68 -1.14 16 15 F -0.21 0.04 15.56 44.97 0.70 0.74 16 16 F -0.21 -0.01 15.59 44.97 0.70 0.70 16 17 C -0.13 -0.68 5.27 -19.80 -0.10 -0.79 16 18 C -0.09 -0.25 2.33 71.24 0.17 -0.08 16 19 O -0.55 -2.28 12.65 -148.98 -1.89 -4.16 16 20 Si 1.02 2.64 25.74 68.60 1.77 4.41 16 21 H -0.26 -0.98 6.73 99.48 0.67 -0.31 16 22 H -0.26 -1.09 7.11 99.48 0.71 -0.38 16 23 H -0.24 -0.36 7.11 99.48 0.71 0.35 16 24 C -0.09 -0.55 8.03 22.46 0.18 -0.37 16 25 C -0.14 -0.67 9.43 22.49 0.21 -0.46 16 26 C -0.10 -0.18 9.28 22.24 0.21 0.03 16 27 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 28 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 29 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 31 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 32 H 0.07 -0.31 7.67 -2.39 -0.02 -0.32 16 33 H 0.07 -0.35 7.67 -2.39 -0.02 -0.37 16 34 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 35 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 36 H 0.14 -0.55 7.40 -2.91 -0.02 -0.57 16 37 H 0.13 -0.06 6.20 -2.91 -0.02 -0.08 16 38 H 0.15 -0.01 6.20 -2.91 -0.02 -0.03 16 39 H 0.14 0.41 5.08 -2.91 -0.01 0.39 16 40 H 0.23 -3.53 8.14 -2.39 -0.02 -3.55 16 41 H 0.09 -0.01 7.82 -2.39 -0.02 -0.03 16 42 H 0.38 -0.30 8.60 -74.06 -0.64 -0.94 16 43 H 0.14 0.55 3.02 -2.91 -0.01 0.54 16 44 H 0.12 0.32 6.20 -2.91 -0.02 0.31 16 45 H 0.14 -0.37 7.40 -2.92 -0.02 -0.39 16 Total: 0.00 -14.84 374.40 7.46 -7.38 By element: Atomic # 1 Polarization: -8.38 SS G_CDS: 1.12 Total: -7.26 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 5.08 Total: 4.26 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: -2.74 Total: -5.01 kcal Atomic # 9 Polarization: 0.03 SS G_CDS: 1.40 Total: 1.43 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.61 Total: -0.80 kcal Total: -14.84 7.46 -7.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.407 kcal (2) G-P(sol) polarization free energy of solvation -14.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds