Wall clock time and date at job start Mon Mar 8 2021 09:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86305 * 109.47087 * 2 1 4 4 C 1.86297 * 109.47486 * 239.99895 * 2 1 3 5 5 C 1.86799 * 109.47208 * 119.99635 * 2 1 3 6 6 C 1.38321 * 119.88013 * 269.98132 * 5 2 1 7 7 C 1.38019 * 120.12417 * 179.97438 * 6 5 2 8 8 C 1.39333 * 119.87635 * 0.02562 * 7 6 5 9 9 C 1.48393 * 120.12105 * 179.97438 * 8 7 6 10 10 C 1.39238 * 120.09278 * 123.37149 * 9 8 7 11 11 C 1.38546 * 119.82364 * 180.02562 * 10 9 8 12 12 O 1.35901 * 119.99846 * 180.02562 * 11 10 9 13 13 C 1.42899 * 116.99769 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46859 * 179.97438 * 13 12 11 15 15 O 1.42905 * 109.47094 * 65.00188 * 14 13 12 16 16 C 1.38797 * 120.00481 * 359.97438 * 11 10 9 17 17 C 1.38248 * 120.18741 * 0.02562 * 16 11 10 18 18 C 1.38026 * 120.18108 * 359.76258 * 17 16 11 19 19 C 1.50701 * 120.00513 * 180.26263 * 18 17 16 20 20 O 1.42897 * 109.47547 * 105.36102 * 19 18 17 21 21 Si 1.86300 * 109.47004 * 345.35687 * 19 18 17 22 22 H 1.48502 * 109.47009 * 60.00731 * 21 19 18 23 23 H 1.48506 * 109.46687 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47462 * 300.00358 * 21 19 18 25 25 C 1.39339 * 119.75852 * 359.97438 * 8 7 6 26 26 C 1.38020 * 119.87850 * 0.02562 * 25 8 7 27 27 H 1.08998 * 109.46930 * 300.00535 * 1 2 3 28 28 H 1.08998 * 109.46668 * 60.00430 * 1 2 3 29 29 H 1.09003 * 109.46587 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47216 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46742 * 299.99832 * 3 2 1 32 32 H 1.08993 * 109.47181 * 59.99385 * 3 2 1 33 33 H 1.09008 * 109.46835 * 299.99934 * 4 2 1 34 34 H 1.08998 * 109.47181 * 59.99654 * 4 2 1 35 35 H 1.09000 * 109.47167 * 180.02562 * 4 2 1 36 36 H 1.08005 * 119.93637 * 359.97438 * 6 5 2 37 37 H 1.07998 * 120.06111 * 180.29686 * 7 6 5 38 38 H 1.08001 * 120.09286 * 0.02697 * 10 9 8 39 39 H 1.08997 * 109.47364 * 299.99886 * 13 12 11 40 40 H 1.09002 * 109.47750 * 60.00326 * 13 12 11 41 41 H 1.09006 * 109.47068 * 184.99823 * 14 13 12 42 42 H 1.08999 * 109.47206 * 304.99727 * 14 13 12 43 43 H 0.96699 * 114.00104 * 179.97438 * 15 14 13 44 44 H 1.07999 * 119.90411 * 180.02562 * 16 11 10 45 45 H 1.08000 * 119.90960 * 180.02562 * 17 16 11 46 46 H 1.09000 * 109.46900 * 225.35962 * 19 18 17 47 47 H 0.96703 * 113.99904 * 299.99910 * 20 19 18 48 48 H 1.08006 * 120.05983 * 179.97438 * 25 8 7 49 49 H 1.07996 * 119.94052 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5253 6 6 2.7158 -0.1665 2.6874 7 6 3.1753 -0.8121 3.8175 8 6 3.4080 -2.1855 3.7859 9 6 3.9027 -2.8849 4.9976 10 6 3.1867 -3.9553 5.5270 11 6 3.6534 -4.6040 6.6588 12 8 2.9576 -5.6495 7.1782 13 6 3.4968 -6.2711 8.3465 14 6 2.5827 -7.4183 8.7817 15 8 2.5838 -8.4353 7.7778 16 6 4.8320 -4.1869 7.2615 17 6 5.5432 -3.1241 6.7362 18 6 5.0876 -2.4751 5.6064 19 6 5.8691 -1.3209 5.0336 20 8 6.5457 -1.7450 3.8485 21 14 7.1180 -0.7344 6.2855 22 1 8.0465 -1.8452 6.6162 23 1 7.8876 0.4034 5.7213 24 1 6.4150 -0.2937 7.5170 25 6 3.1746 -2.8997 2.6126 26 6 2.7150 -2.2440 1.4884 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8899 33 1 2.1208 -1.9060 -1.5210 34 1 2.1208 -0.3645 -2.4111 35 1 3.5741 -0.8786 -1.5208 36 1 2.5354 0.8981 2.7106 37 1 3.3501 -0.2544 4.7257 38 1 2.2700 -4.2791 5.0567 39 1 4.4900 -6.6615 8.1249 40 1 3.5657 -5.5373 9.1497 41 1 2.9451 -7.8351 9.7215 42 1 1.5684 -7.0431 8.9179 43 1 2.0244 -9.1957 7.9876 44 1 5.1945 -4.6940 8.1435 45 1 6.4600 -2.8036 7.2086 46 1 5.1876 -0.5056 4.7909 47 1 7.1699 -2.4699 3.9900 48 1 3.3537 -3.9644 2.5826 49 1 2.5341 -2.7966 0.5783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:04 Heat of formation + Delta-G solvation = -114.282838 kcal Electronic energy + Delta-G solvation = -27814.487872 eV Core-core repulsion = 24022.962101 eV Total energy + Delta-G solvation = -3791.525771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46561 -40.08063 -38.80259 -37.73449 -36.93692 -33.45590 -32.47581 -31.72123 -30.58354 -29.95421 -29.29475 -28.36802 -28.34341 -26.39141 -24.93633 -23.52881 -23.14940 -22.54885 -21.49141 -19.32789 -18.70004 -18.27276 -17.32734 -17.19001 -16.65681 -16.63134 -16.23635 -15.89480 -15.54858 -15.48426 -15.14805 -14.95671 -14.85994 -14.39160 -14.20727 -14.12985 -14.00837 -13.88863 -13.77439 -13.68745 -13.55192 -13.32496 -13.19025 -13.15275 -13.03068 -12.95949 -12.50868 -12.27206 -12.17337 -11.98485 -11.93719 -11.78576 -11.50837 -11.14503 -10.96043 -10.82826 -10.69995 -10.31300 -10.10434 -9.61322 -9.33952 -9.02884 -0.01932 0.34418 0.67663 0.70833 1.17203 1.40467 1.51966 1.81427 1.91624 1.93199 2.02950 2.12816 2.63310 2.64071 3.08702 3.09323 3.56131 3.65366 3.68809 3.84875 3.89776 3.97936 4.13227 4.14313 4.22463 4.25264 4.29348 4.43883 4.46309 4.57569 4.63896 4.69210 4.75915 4.77124 4.79025 4.82212 4.82988 4.83141 4.85042 4.96844 5.06920 5.21541 5.29035 5.31026 5.44523 5.49844 5.52987 5.58772 5.60165 5.75987 5.76708 5.81411 6.26637 6.39462 6.55779 6.64951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.367 4.367 6 C -0.087 4.087 7 C -0.115 4.115 8 C -0.030 4.030 9 C 0.020 3.980 10 C -0.138 4.138 11 C 0.141 3.859 12 O -0.304 6.304 13 C 0.057 3.943 14 C 0.077 3.923 15 O -0.567 6.567 16 C -0.205 4.205 17 C -0.084 4.084 18 C -0.146 4.146 19 C -0.078 4.078 20 O -0.531 6.531 21 Si 0.941 3.059 22 H -0.252 1.252 23 H -0.252 1.252 24 H -0.249 1.249 25 C -0.110 4.110 26 C -0.086 4.086 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.384 0.616 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.119 0.881 47 H 0.372 0.628 48 H 0.119 0.881 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 -0.777 2.715 2.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.409 4.409 6 C -0.105 4.105 7 C -0.133 4.133 8 C -0.030 4.030 9 C 0.020 3.980 10 C -0.157 4.157 11 C 0.095 3.905 12 O -0.218 6.218 13 C -0.018 4.018 14 C -0.001 4.001 15 O -0.373 6.373 16 C -0.223 4.223 17 C -0.102 4.102 18 C -0.147 4.147 19 C -0.189 4.189 20 O -0.335 6.335 21 Si 0.764 3.236 22 H -0.176 1.176 23 H -0.176 1.176 24 H -0.172 1.172 25 C -0.128 4.128 26 C -0.104 4.104 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.231 0.769 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.136 0.864 47 H 0.219 0.781 48 H 0.137 0.863 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.045 0.280 2.771 2.785 hybrid contribution -0.105 -1.192 0.774 1.425 sum -0.150 -0.912 3.545 3.663 Atomic orbital electron populations 1.26127 1.20586 1.04528 1.04393 0.78186 0.66749 0.66148 0.63914 1.26131 1.06525 1.18580 1.04450 1.26135 1.06519 1.08018 1.15040 1.27362 1.04008 0.99457 1.10065 1.20963 0.97366 0.99522 0.92617 1.21178 1.00179 0.93335 0.98648 1.18578 0.98837 0.93271 0.92303 1.18383 0.92829 0.93471 0.93345 1.20482 1.02102 0.97002 0.96097 1.18898 0.90804 0.87649 0.93149 1.86155 1.48914 1.43530 1.43187 1.22931 0.98224 0.93880 0.86754 1.22198 0.99466 0.87719 0.90698 1.86553 1.72077 1.32462 1.46227 1.21209 0.96774 1.01141 1.03215 1.20815 0.99203 0.95102 0.95064 1.20191 0.97051 1.00297 0.97116 1.25048 1.00771 0.97868 0.95186 1.86565 1.59201 1.56533 1.31223 0.85842 0.79033 0.80835 0.77878 1.17577 1.17566 1.17232 1.21212 0.99449 0.99576 0.92527 1.20975 0.97236 0.94596 0.97547 0.91206 0.91136 0.91195 0.91000 0.91068 0.91209 0.91209 0.91066 0.91015 0.86084 0.86268 0.84709 0.90995 0.90340 0.91191 0.92272 0.76854 0.85134 0.85551 0.86369 0.78119 0.86314 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.37 8.65 101.05 0.87 1.24 16 2 Si 1.06 -1.77 12.31 -169.99 -2.09 -3.86 16 3 C -0.45 0.47 8.52 101.05 0.86 1.34 16 4 C -0.45 0.42 8.52 101.05 0.86 1.28 16 5 C -0.37 -0.30 4.60 -39.52 -0.18 -0.48 16 6 C -0.09 -0.11 9.28 -39.63 -0.37 -0.48 16 7 C -0.12 -0.24 7.93 -39.25 -0.31 -0.55 16 8 C -0.03 -0.08 4.85 -104.90 -0.51 -0.59 16 9 C 0.02 0.05 5.39 -104.92 -0.57 -0.51 16 10 C -0.14 -0.42 9.56 -39.10 -0.37 -0.79 16 11 C 0.14 0.39 6.68 -39.26 -0.26 0.13 16 12 O -0.30 -0.93 10.10 -24.28 -0.25 -1.17 16 13 C 0.06 -0.01 5.12 37.16 0.19 0.18 16 14 C 0.08 -0.09 7.43 37.16 0.28 0.18 16 15 O -0.57 -0.46 13.62 -40.08 -0.55 -1.01 16 16 C -0.20 -0.27 9.03 -39.37 -0.36 -0.63 16 17 C -0.08 -0.10 8.65 -39.66 -0.34 -0.44 16 18 C -0.15 -0.27 5.27 -104.28 -0.55 -0.81 16 19 C -0.08 -0.08 2.07 36.01 0.07 0.00 16 20 O -0.53 -0.90 12.82 -35.23 -0.45 -1.35 16 21 Si 0.94 0.18 25.48 -169.99 -4.33 -4.15 16 22 H -0.25 0.02 6.74 56.52 0.38 0.40 16 23 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 24 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 25 C -0.11 -0.28 9.63 -39.25 -0.38 -0.66 16 26 C -0.09 -0.13 9.28 -39.63 -0.37 -0.50 16 27 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.09 7.67 -51.93 -0.40 -0.49 16 33 H 0.07 -0.08 7.67 -51.92 -0.40 -0.47 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 35 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 36 H 0.12 -0.10 7.40 -52.48 -0.39 -0.49 16 37 H 0.12 0.08 7.03 -52.49 -0.37 -0.29 16 38 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 39 H 0.07 -0.02 7.65 -51.93 -0.40 -0.42 16 40 H 0.08 -0.18 7.66 -51.93 -0.40 -0.58 16 41 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 42 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 43 H 0.38 -1.43 9.12 45.56 0.42 -1.01 16 44 H 0.13 -0.11 6.28 -52.49 -0.33 -0.44 16 45 H 0.13 -0.06 4.87 -52.49 -0.26 -0.31 16 46 H 0.12 0.10 4.94 -51.93 -0.26 -0.16 16 47 H 0.37 -0.53 8.70 45.56 0.40 -0.14 16 48 H 0.12 0.22 8.06 -52.48 -0.42 -0.21 16 49 H 0.12 -0.04 7.40 -52.49 -0.39 -0.43 16 LS Contribution 400.29 15.07 6.03 6.03 Total: 0.00 -7.71 400.29 -9.23 -16.94 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: -6.17 Total: -9.33 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.43 Total: -2.10 kcal Atomic # 8 Polarization: -2.29 SS G_CDS: -1.24 Total: -3.53 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: -6.42 Total: -8.01 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -7.71 -9.23 -16.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.341 kcal (2) G-P(sol) polarization free energy of solvation -7.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds