Wall clock time and date at job start Mon Mar 8 2021 09:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86305 * 109.47087 * 2 1 4 4 C 1.86297 * 109.47486 * 239.99895 * 2 1 3 5 5 C 1.86799 * 109.47208 * 119.99635 * 2 1 3 6 6 C 1.38321 * 119.88013 * 269.98132 * 5 2 1 7 7 C 1.38019 * 120.12417 * 179.97438 * 6 5 2 8 8 C 1.39333 * 119.87635 * 0.02562 * 7 6 5 9 9 C 1.48393 * 120.12105 * 179.97438 * 8 7 6 10 10 C 1.39238 * 120.09278 * 123.37149 * 9 8 7 11 11 C 1.38546 * 119.82364 * 180.02562 * 10 9 8 12 12 O 1.35901 * 119.99846 * 180.02562 * 11 10 9 13 13 C 1.42899 * 116.99769 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.46859 * 179.97438 * 13 12 11 15 15 O 1.42905 * 109.47094 * 65.00188 * 14 13 12 16 16 C 1.38797 * 120.00481 * 359.97438 * 11 10 9 17 17 C 1.38248 * 120.18741 * 0.02562 * 16 11 10 18 18 C 1.38026 * 120.18108 * 359.76258 * 17 16 11 19 19 C 1.50701 * 120.00513 * 180.26263 * 18 17 16 20 20 O 1.42897 * 109.47547 * 105.36102 * 19 18 17 21 21 Si 1.86300 * 109.47004 * 345.35687 * 19 18 17 22 22 H 1.48502 * 109.47009 * 60.00731 * 21 19 18 23 23 H 1.48506 * 109.46687 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47462 * 300.00358 * 21 19 18 25 25 C 1.39339 * 119.75852 * 359.97438 * 8 7 6 26 26 C 1.38020 * 119.87850 * 0.02562 * 25 8 7 27 27 H 1.08998 * 109.46930 * 300.00535 * 1 2 3 28 28 H 1.08998 * 109.46668 * 60.00430 * 1 2 3 29 29 H 1.09003 * 109.46587 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47216 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46742 * 299.99832 * 3 2 1 32 32 H 1.08993 * 109.47181 * 59.99385 * 3 2 1 33 33 H 1.09008 * 109.46835 * 299.99934 * 4 2 1 34 34 H 1.08998 * 109.47181 * 59.99654 * 4 2 1 35 35 H 1.09000 * 109.47167 * 180.02562 * 4 2 1 36 36 H 1.08005 * 119.93637 * 359.97438 * 6 5 2 37 37 H 1.07998 * 120.06111 * 180.29686 * 7 6 5 38 38 H 1.08001 * 120.09286 * 0.02697 * 10 9 8 39 39 H 1.08997 * 109.47364 * 299.99886 * 13 12 11 40 40 H 1.09002 * 109.47750 * 60.00326 * 13 12 11 41 41 H 1.09006 * 109.47068 * 184.99823 * 14 13 12 42 42 H 1.08999 * 109.47206 * 304.99727 * 14 13 12 43 43 H 0.96699 * 114.00104 * 179.97438 * 15 14 13 44 44 H 1.07999 * 119.90411 * 180.02562 * 16 11 10 45 45 H 1.08000 * 119.90960 * 180.02562 * 17 16 11 46 46 H 1.09000 * 109.46900 * 225.35962 * 19 18 17 47 47 H 0.96703 * 113.99904 * 299.99910 * 20 19 18 48 48 H 1.08006 * 120.05983 * 179.97438 * 25 8 7 49 49 H 1.07996 * 119.94052 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5253 6 6 2.7158 -0.1665 2.6874 7 6 3.1753 -0.8121 3.8175 8 6 3.4080 -2.1855 3.7859 9 6 3.9027 -2.8849 4.9976 10 6 3.1867 -3.9553 5.5270 11 6 3.6534 -4.6040 6.6588 12 8 2.9576 -5.6495 7.1782 13 6 3.4968 -6.2711 8.3465 14 6 2.5827 -7.4183 8.7817 15 8 2.5838 -8.4353 7.7778 16 6 4.8320 -4.1869 7.2615 17 6 5.5432 -3.1241 6.7362 18 6 5.0876 -2.4751 5.6064 19 6 5.8691 -1.3209 5.0336 20 8 6.5457 -1.7450 3.8485 21 14 7.1180 -0.7344 6.2855 22 1 8.0465 -1.8452 6.6162 23 1 7.8876 0.4034 5.7213 24 1 6.4150 -0.2937 7.5170 25 6 3.1746 -2.8997 2.6126 26 6 2.7150 -2.2440 1.4884 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8899 33 1 2.1208 -1.9060 -1.5210 34 1 2.1208 -0.3645 -2.4111 35 1 3.5741 -0.8786 -1.5208 36 1 2.5354 0.8981 2.7106 37 1 3.3501 -0.2544 4.7257 38 1 2.2700 -4.2791 5.0567 39 1 4.4900 -6.6615 8.1249 40 1 3.5657 -5.5373 9.1497 41 1 2.9451 -7.8351 9.7215 42 1 1.5684 -7.0431 8.9179 43 1 2.0244 -9.1957 7.9876 44 1 5.1945 -4.6940 8.1435 45 1 6.4600 -2.8036 7.2086 46 1 5.1876 -0.5056 4.7909 47 1 7.1699 -2.4699 3.9900 48 1 3.3537 -3.9644 2.5826 49 1 2.5341 -2.7966 0.5783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:03 Heat of formation + Delta-G solvation = -109.361808 kcal Electronic energy + Delta-G solvation = -27814.274480 eV Core-core repulsion = 24022.962101 eV Total energy + Delta-G solvation = -3791.312379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56543 -40.16217 -38.87122 -37.72621 -37.01183 -33.54865 -32.55274 -31.80105 -30.59163 -29.99775 -29.24879 -28.27306 -28.25093 -26.47296 -24.98215 -23.55829 -23.22178 -22.65704 -21.56872 -19.40038 -18.65829 -18.34612 -17.39047 -17.28416 -16.72165 -16.67132 -16.30839 -15.96168 -15.57255 -15.56464 -15.14313 -15.00983 -14.88934 -14.45328 -14.26482 -14.07570 -13.97266 -13.88653 -13.73053 -13.71500 -13.58941 -13.32475 -13.12899 -13.09032 -12.96345 -12.94808 -12.50118 -12.29182 -12.20039 -12.02784 -12.00602 -11.83835 -11.55365 -11.05167 -10.90296 -10.73404 -10.72477 -10.37739 -10.20441 -9.73310 -9.46359 -9.13712 -0.13614 0.21318 0.57647 0.58658 1.14150 1.39972 1.49908 1.88062 1.88307 2.05492 2.07318 2.15138 2.52183 2.69922 2.99717 3.25718 3.50357 3.60564 3.65009 3.80539 3.95335 4.03771 4.06206 4.11232 4.16278 4.27335 4.33868 4.41021 4.50821 4.58399 4.61486 4.67969 4.71643 4.84828 4.86331 4.86837 4.90385 4.91164 4.92491 4.93074 4.96901 5.11090 5.18401 5.20619 5.35127 5.41221 5.59983 5.61868 5.66231 5.69027 5.70133 5.73484 6.18328 6.32028 6.71183 6.81960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.124 2.876 3 C -0.460 4.460 4 C -0.462 4.462 5 C -0.380 4.380 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.043 4.043 9 C 0.011 3.989 10 C -0.155 4.155 11 C 0.129 3.871 12 O -0.326 6.326 13 C 0.046 3.954 14 C 0.074 3.926 15 O -0.596 6.596 16 C -0.204 4.204 17 C -0.086 4.086 18 C -0.150 4.150 19 C -0.083 4.083 20 O -0.547 6.547 21 Si 0.977 3.023 22 H -0.242 1.242 23 H -0.272 1.272 24 H -0.253 1.253 25 C -0.128 4.128 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.400 0.600 44 H 0.154 0.846 45 H 0.146 0.854 46 H 0.116 0.884 47 H 0.384 0.616 48 H 0.116 0.884 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -0.339 3.278 3.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.311 2.689 3 C -0.567 4.567 4 C -0.569 4.569 5 C -0.419 4.419 6 C -0.114 4.114 7 C -0.146 4.146 8 C -0.043 4.043 9 C 0.010 3.990 10 C -0.174 4.174 11 C 0.083 3.917 12 O -0.241 6.241 13 C -0.028 4.028 14 C -0.004 4.004 15 O -0.406 6.406 16 C -0.223 4.223 17 C -0.103 4.103 18 C -0.150 4.150 19 C -0.193 4.193 20 O -0.354 6.354 21 Si 0.800 3.200 22 H -0.166 1.166 23 H -0.197 1.197 24 H -0.176 1.176 25 C -0.146 4.146 26 C -0.114 4.114 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.159 0.841 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.250 0.750 44 H 0.171 0.829 45 H 0.163 0.837 46 H 0.133 0.867 47 H 0.233 0.767 48 H 0.134 0.866 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.392 0.676 3.352 3.442 hybrid contribution -0.268 -1.358 0.590 1.505 sum 0.124 -0.682 3.942 4.003 Atomic orbital electron populations 1.26270 1.21524 1.04388 1.04582 0.77210 0.65234 0.64788 0.61646 1.26246 1.06379 1.19187 1.04911 1.26283 1.06344 1.08426 1.15880 1.28005 1.03265 0.99379 1.11244 1.21312 0.96973 1.00654 0.92487 1.21402 1.00454 0.93274 0.99499 1.18712 0.99367 0.93764 0.92457 1.18495 0.93342 0.93547 0.93567 1.20532 1.02252 0.97750 0.96817 1.19036 0.91471 0.87865 0.93301 1.86131 1.49721 1.43707 1.44496 1.23248 0.98448 0.94692 0.86414 1.22370 0.99565 0.87177 0.91241 1.86502 1.72833 1.33630 1.47593 1.21468 0.96058 1.01042 1.03690 1.21056 0.99717 0.94798 0.94741 1.20346 0.96773 1.00584 0.97341 1.25203 1.01185 0.97487 0.95388 1.86528 1.59677 1.57211 1.31941 0.85329 0.77977 0.79984 0.76683 1.16572 1.19716 1.17648 1.21361 1.00362 0.99702 0.93204 1.21260 0.97115 0.95268 0.97801 0.91352 0.90619 0.91531 0.91354 0.90613 0.90798 0.91080 0.90600 0.91434 0.84100 0.85419 0.85612 0.90981 0.88141 0.88410 0.92169 0.75004 0.82884 0.83699 0.86679 0.76749 0.86613 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.90 8.65 113.37 0.98 1.89 16 2 Si 1.12 -4.12 12.31 68.60 0.84 -3.28 16 3 C -0.46 1.28 8.52 113.37 0.97 2.25 16 4 C -0.46 0.98 8.52 113.37 0.97 1.95 16 5 C -0.38 -0.81 4.60 22.31 0.10 -0.71 16 6 C -0.10 -0.29 9.28 22.24 0.21 -0.09 16 7 C -0.13 -0.70 7.93 22.48 0.18 -0.52 16 8 C -0.04 -0.32 4.85 -20.04 -0.10 -0.42 16 9 C 0.01 0.08 5.39 -20.06 -0.11 -0.03 16 10 C -0.15 -1.28 9.56 22.58 0.22 -1.07 16 11 C 0.13 0.88 6.68 22.48 0.15 1.03 16 12 O -0.33 -2.36 10.10 -87.80 -0.89 -3.25 16 13 C 0.05 -0.02 5.12 71.98 0.37 0.35 16 14 C 0.07 -0.19 7.43 71.98 0.53 0.34 16 15 O -0.60 -1.22 13.62 -144.34 -1.97 -3.19 16 16 C -0.20 -0.53 9.03 22.41 0.20 -0.33 16 17 C -0.09 -0.18 8.65 22.22 0.19 0.01 16 18 C -0.15 -0.65 5.27 -19.64 -0.10 -0.76 16 19 C -0.08 -0.21 2.07 71.24 0.15 -0.06 16 20 O -0.55 -2.24 12.82 -148.98 -1.91 -4.15 16 21 Si 0.98 -0.08 25.48 68.60 1.75 1.67 16 22 H -0.24 0.42 6.74 99.48 0.67 1.09 16 23 H -0.27 -0.88 7.11 99.48 0.71 -0.17 16 24 H -0.25 -0.13 7.11 99.48 0.71 0.58 16 25 C -0.13 -0.92 9.63 22.48 0.22 -0.70 16 26 C -0.10 -0.41 9.28 22.24 0.21 -0.20 16 27 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 28 H 0.07 -0.22 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 30 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 31 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.07 -0.26 7.67 -2.39 -0.02 -0.27 16 33 H 0.07 -0.16 7.67 -2.38 -0.02 -0.18 16 34 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 35 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 36 H 0.14 -0.26 7.40 -2.91 -0.02 -0.28 16 37 H 0.13 0.32 7.03 -2.91 -0.02 0.30 16 38 H 0.13 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.07 -0.06 7.65 -2.39 -0.02 -0.07 16 40 H 0.10 -0.54 7.66 -2.39 -0.02 -0.56 16 41 H 0.10 -0.83 8.14 -2.38 -0.02 -0.85 16 42 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.40 -2.82 9.12 -74.06 -0.68 -3.50 16 44 H 0.15 -0.42 6.28 -2.91 -0.02 -0.44 16 45 H 0.15 -0.32 4.87 -2.91 -0.01 -0.33 16 46 H 0.12 0.30 4.94 -2.39 -0.01 0.29 16 47 H 0.38 -0.91 8.70 -74.06 -0.64 -1.56 16 48 H 0.12 0.74 8.06 -2.91 -0.02 0.72 16 49 H 0.14 0.02 7.40 -2.91 -0.02 -0.01 16 Total: 0.00 -18.36 400.29 3.52 -14.84 By element: Atomic # 1 Polarization: -5.94 SS G_CDS: 0.37 Total: -5.57 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.33 Total: 2.93 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -4.76 Total: -10.59 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.59 Total: -1.61 kcal Total: -18.36 3.52 -14.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.526 kcal (2) G-P(sol) polarization free energy of solvation -18.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds