Wall clock time and date at job start Mon Mar 8 2021 09:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86294 * 109.47303 * 2 1 4 4 C 1.86306 * 109.47309 * 239.99657 * 2 1 3 5 5 C 1.86798 * 109.47087 * 120.00200 * 2 1 3 6 6 C 1.38323 * 119.88195 * 90.00015 * 5 2 1 7 7 C 1.38016 * 120.12711 * 180.02562 * 6 5 2 8 8 C 1.39351 * 119.87206 * 359.97438 * 7 6 5 9 9 C 1.48359 * 120.11996 * 180.02562 * 8 7 6 10 10 C 1.39363 * 120.06658 * 359.97438 * 9 8 7 11 11 C 1.37929 * 119.93197 * 179.76901 * 10 9 8 12 12 C 1.38806 * 120.06595 * 0.50629 * 11 10 9 13 13 O 1.35873 * 119.93445 * 179.76496 * 12 11 10 14 14 C 1.42908 * 116.99939 * 359.73099 * 13 12 11 15 15 C 1.50692 * 109.47246 * 179.97438 * 14 13 12 16 16 C 1.38184 * 119.61840 * 0.02562 * 15 14 13 17 17 C 1.38675 * 119.16617 * 179.97438 * 16 15 14 18 18 C 1.38631 * 118.41792 * 359.97438 * 17 16 15 19 19 C 1.38221 * 119.16077 * 0.25627 * 18 17 16 20 20 N 1.31861 * 120.76518 * 359.45246 * 19 18 17 21 21 C 1.38854 * 120.13225 * 359.49242 * 12 11 10 22 22 C 1.50698 * 119.96552 * 180.23055 * 21 12 11 23 23 O 1.42910 * 109.47222 * 285.00082 * 22 21 12 24 24 Si 1.86300 * 109.46853 * 165.00431 * 22 21 12 25 25 H 1.48495 * 109.47662 * 59.99948 * 24 22 21 26 26 H 1.48504 * 109.46894 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46824 * 299.99349 * 24 22 21 28 28 C 1.37883 * 120.06599 * 0.25550 * 21 12 11 29 29 C 1.39355 * 119.75953 * 0.28256 * 8 7 6 30 30 C 1.38015 * 119.87309 * 359.46453 * 29 8 7 31 31 H 1.08995 * 109.46997 * 300.00267 * 1 2 3 32 32 H 1.08998 * 109.47253 * 60.00076 * 1 2 3 33 33 H 1.09006 * 109.47324 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47091 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47138 * 299.99634 * 3 2 1 36 36 H 1.08995 * 109.47312 * 59.99926 * 3 2 1 37 37 H 1.08995 * 109.47088 * 300.00840 * 4 2 1 38 38 H 1.09008 * 109.46781 * 59.99937 * 4 2 1 39 39 H 1.08994 * 109.47018 * 179.97438 * 4 2 1 40 40 H 1.08000 * 119.93678 * 359.97438 * 6 5 2 41 41 H 1.07995 * 120.06031 * 180.02562 * 7 6 5 42 42 H 1.07999 * 120.03191 * 0.02562 * 10 9 8 43 43 H 1.08003 * 119.96017 * 180.25937 * 11 10 9 44 44 H 1.09000 * 109.46702 * 59.99564 * 14 13 12 45 45 H 1.08998 * 109.46700 * 299.99513 * 14 13 12 46 46 H 1.08006 * 120.42016 * 359.97438 * 16 15 14 47 47 H 1.07997 * 120.79161 * 180.02562 * 17 16 15 48 48 H 1.08002 * 120.41548 * 179.97438 * 18 17 16 49 49 H 1.08002 * 119.62066 * 179.74470 * 19 18 17 50 50 H 1.08997 * 109.47500 * 45.00184 * 22 21 12 51 51 H 0.96697 * 113.99836 * 59.99934 * 23 22 21 52 52 H 1.08002 * 120.03609 * 180.02562 * 28 21 12 53 53 H 1.07997 * 120.06255 * 179.70207 * 29 8 7 54 54 H 1.08002 * 119.94158 * 180.25357 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2442 1.4881 7 6 3.1749 -2.9000 2.6122 8 6 3.4079 -2.1858 3.7858 9 6 3.9025 -2.8851 4.9972 10 6 4.1347 -4.2589 4.9644 11 6 4.5990 -4.9054 6.0908 12 6 4.8249 -4.1911 7.2593 13 8 5.2778 -4.8315 8.3687 14 6 5.4936 -6.2402 8.2620 15 6 5.9922 -6.7733 9.5803 16 6 6.1657 -5.9093 10.6447 17 6 6.6245 -6.4101 11.8538 18 6 6.8920 -7.7672 11.9469 19 6 6.6990 -8.5693 10.8379 20 7 6.2560 -8.0594 9.7055 21 6 4.5945 -2.8223 7.2950 22 6 4.8459 -2.0495 8.5641 23 8 3.7985 -2.3154 9.4992 24 14 4.8898 -0.2265 8.1827 25 1 3.5887 0.1889 7.5998 26 1 5.1383 0.5350 9.4332 27 1 5.9783 0.0498 7.2110 28 6 4.1352 -2.1695 6.1707 29 6 3.1697 -0.8131 3.8191 30 6 2.7152 -0.1667 2.6876 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.5740 1.7563 -0.0005 35 1 2.1207 2.2702 -0.8901 36 1 2.1207 2.2702 0.8899 37 1 2.1206 -1.9059 -1.5211 38 1 2.1207 -0.3645 -2.4112 39 1 3.5740 -0.8779 -1.5213 40 1 2.5340 -2.7968 0.5781 41 1 3.3543 -3.9645 2.5820 42 1 3.9553 -4.8159 4.0567 43 1 4.7831 -5.9693 6.0647 44 1 6.2348 -6.4364 7.4873 45 1 4.5567 -6.7325 8.0016 46 1 5.9468 -4.8573 10.5364 47 1 6.7691 -5.7586 12.7029 48 1 7.2509 -8.1914 12.8730 49 1 6.9090 -9.6269 10.9010 50 1 5.8010 -2.3543 8.9920 51 1 3.7170 -3.2473 9.7440 52 1 3.9565 -1.1047 6.1989 53 1 3.3441 -0.2556 4.7275 54 1 2.5341 0.8978 2.7109 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419802.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:30 Heat of formation + Delta-G solvation = -18.227017 kcal Electronic energy + Delta-G solvation = -32756.283388 eV Core-core repulsion = 28553.737010 eV Total energy + Delta-G solvation = -4202.546378 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 393.167 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.82419 -41.07764 -40.04019 -38.55076 -37.49678 -33.88136 -33.44951 -32.94712 -32.63310 -31.77198 -29.68384 -29.15313 -28.29548 -28.26398 -28.15348 -26.82276 -24.70069 -24.33532 -23.82860 -23.19632 -22.10509 -21.47333 -19.52918 -18.40350 -18.27308 -17.87695 -17.28372 -17.10522 -16.98645 -16.66268 -16.33287 -15.93019 -15.73480 -15.44149 -15.28866 -15.13000 -15.00804 -14.66648 -14.47055 -14.26519 -14.16474 -14.09250 -14.04606 -13.80952 -13.72357 -13.59713 -13.44305 -13.30310 -13.12717 -13.10081 -12.96273 -12.76507 -12.64900 -12.55116 -12.39165 -12.26225 -11.98880 -11.76766 -11.21831 -11.08478 -10.94830 -10.87672 -10.75754 -10.74480 -10.51502 -10.18343 -10.08435 -9.94911 -9.81585 -8.73187 -0.35886 0.05826 0.12387 0.27595 0.54628 0.80990 1.13232 1.43163 1.44891 1.73087 1.86474 1.87953 2.04190 2.10219 2.53687 2.68344 2.73898 3.10008 3.27345 3.45527 3.58098 3.66069 3.72869 3.87960 3.91477 3.99368 4.02640 4.08719 4.14583 4.18233 4.19118 4.20089 4.25283 4.38056 4.44691 4.55884 4.61126 4.67648 4.78768 4.80913 4.84967 4.85428 4.89209 4.89821 4.90826 4.91620 4.97823 5.04343 5.10496 5.13789 5.15954 5.25500 5.27128 5.44613 5.57903 5.60518 5.61753 5.68346 5.69716 5.70835 5.73856 6.14140 6.17929 6.60514 6.88582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.125 2.875 3 C -0.463 4.463 4 C -0.460 4.460 5 C -0.383 4.383 6 C -0.094 4.094 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.086 4.086 10 C -0.067 4.067 11 C -0.200 4.200 12 C 0.141 3.859 13 O -0.311 6.311 14 C 0.116 3.884 15 C 0.103 3.897 16 C -0.160 4.160 17 C -0.079 4.079 18 C -0.171 4.171 19 C 0.091 3.909 20 N -0.507 5.507 21 C -0.149 4.149 22 C -0.081 4.081 23 O -0.549 6.549 24 Si 1.019 2.981 25 H -0.261 1.261 26 H -0.265 1.265 27 H -0.242 1.242 28 C -0.089 4.089 29 C -0.147 4.147 30 C -0.096 4.096 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.149 0.851 47 H 0.159 0.841 48 H 0.163 0.837 49 H 0.179 0.821 50 H 0.089 0.911 51 H 0.376 0.624 52 H 0.134 0.866 53 H 0.120 0.880 54 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.235 -1.401 -0.712 1.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.312 2.688 3 C -0.570 4.570 4 C -0.567 4.567 5 C -0.422 4.422 6 C -0.112 4.112 7 C -0.153 4.153 8 C -0.049 4.049 9 C -0.086 4.086 10 C -0.085 4.085 11 C -0.218 4.218 12 C 0.096 3.904 13 O -0.224 6.224 14 C 0.040 3.960 15 C -0.034 4.034 16 C -0.180 4.180 17 C -0.104 4.104 18 C -0.190 4.190 19 C -0.066 4.066 20 N -0.218 5.218 21 C -0.150 4.150 22 C -0.190 4.190 23 O -0.356 6.356 24 Si 0.840 3.160 25 H -0.186 1.186 26 H -0.190 1.190 27 H -0.165 1.165 28 C -0.107 4.107 29 C -0.165 4.165 30 C -0.114 4.114 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.167 0.833 47 H 0.177 0.823 48 H 0.180 0.820 49 H 0.196 0.804 50 H 0.106 0.894 51 H 0.225 0.775 52 H 0.151 0.849 53 H 0.138 0.862 54 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.118 -0.402 -1.394 1.831 hybrid contribution 0.240 -0.992 1.110 1.508 sum 1.358 -1.394 -0.284 1.966 Atomic orbital electron populations 1.26297 1.21741 1.04439 1.04472 0.77184 0.65122 0.64658 0.61797 1.26286 1.06412 1.19481 1.04800 1.26249 1.06416 1.08500 1.15563 1.28024 1.03399 0.99769 1.11056 1.21358 0.96624 0.95038 0.98183 1.21542 1.00483 1.00572 0.92683 1.18890 0.99391 0.93620 0.92969 1.18829 1.02797 0.93927 0.93034 1.21322 0.95370 0.93046 0.98767 1.21474 1.06056 1.01653 0.92640 1.18791 0.94470 0.91059 0.86100 1.85876 1.80569 1.22343 1.33643 1.21195 1.02196 0.78207 0.94357 1.20767 0.97537 0.89845 0.95246 1.22088 1.00250 1.02183 0.93491 1.22033 0.94175 0.96163 0.98074 1.22550 1.00633 0.94660 1.01207 1.23168 0.94165 1.01698 0.87586 1.67172 1.12830 1.13624 1.28207 1.19575 1.06210 0.91850 0.97340 1.25181 0.93812 1.12325 0.87645 1.86669 1.54382 1.32241 1.62263 0.84409 0.80371 0.71463 0.79714 1.18554 1.18971 1.16520 1.21128 0.97486 1.00253 0.91817 1.21508 1.01361 0.94099 0.99483 1.21311 0.96871 1.00652 0.92536 0.91585 0.90669 0.91388 0.91299 0.90650 0.91048 0.90798 0.90669 0.91254 0.84009 0.84598 0.83211 0.82791 0.88868 0.88738 0.83339 0.82344 0.81980 0.80393 0.89352 0.77455 0.84865 0.86165 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.31 8.65 113.37 0.98 2.29 16 2 Si 1.13 -5.74 12.31 68.60 0.84 -4.89 16 3 C -0.46 1.66 8.52 113.37 0.97 2.63 16 4 C -0.46 1.94 8.52 113.37 0.97 2.91 16 5 C -0.38 -0.12 4.60 22.31 0.10 -0.02 16 6 C -0.09 -0.08 9.28 22.24 0.21 0.12 16 7 C -0.14 -0.38 9.43 22.48 0.21 -0.16 16 8 C -0.05 -0.27 5.88 -20.05 -0.12 -0.39 16 9 C -0.09 -0.45 5.88 -20.03 -0.12 -0.56 16 10 C -0.07 -0.13 9.42 22.47 0.21 0.08 16 11 C -0.20 -0.19 9.02 22.33 0.20 0.02 16 12 C 0.14 0.40 6.62 22.55 0.15 0.55 16 13 O -0.31 -0.33 7.47 -92.12 -0.69 -1.02 16 14 C 0.12 -0.01 5.28 71.23 0.38 0.36 16 15 C 0.10 0.30 6.78 42.54 0.29 0.59 16 16 C -0.16 -0.13 9.41 22.36 0.21 0.09 16 17 C -0.08 0.14 10.18 22.47 0.23 0.37 16 18 C -0.17 0.40 10.11 22.36 0.23 0.63 16 19 C 0.09 0.05 11.18 84.68 0.95 0.99 16 20 N -0.51 -2.39 10.27 -183.89 -1.89 -4.28 16 21 C -0.15 -0.67 5.27 -19.80 -0.10 -0.78 16 22 C -0.08 -0.25 2.33 71.24 0.17 -0.08 16 23 O -0.55 -2.45 12.65 -148.98 -1.89 -4.34 16 24 Si 1.02 3.35 25.74 68.60 1.77 5.11 16 25 H -0.26 -1.23 6.73 99.48 0.67 -0.56 16 26 H -0.27 -1.30 7.11 99.48 0.71 -0.60 16 27 H -0.24 -0.56 7.11 99.48 0.71 0.15 16 28 C -0.09 -0.50 8.03 22.47 0.18 -0.32 16 29 C -0.15 -0.76 9.43 22.49 0.21 -0.54 16 30 C -0.10 -0.23 9.28 22.24 0.21 -0.02 16 31 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 32 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 33 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 34 H 0.07 -0.20 7.96 -2.39 -0.02 -0.21 16 35 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 36 H 0.07 -0.27 7.67 -2.39 -0.02 -0.28 16 37 H 0.07 -0.36 7.67 -2.39 -0.02 -0.37 16 38 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 39 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.14 -0.56 7.40 -2.91 -0.02 -0.58 16 41 H 0.14 -0.19 6.20 -2.91 -0.02 -0.21 16 42 H 0.15 -0.38 6.20 -2.91 -0.02 -0.39 16 43 H 0.15 -0.54 6.28 -2.91 -0.02 -0.56 16 44 H 0.09 -0.14 7.64 -2.39 -0.02 -0.16 16 45 H 0.09 -0.16 7.67 -2.39 -0.02 -0.18 16 46 H 0.15 -0.17 7.00 -2.91 -0.02 -0.19 16 47 H 0.16 -1.05 8.06 -2.91 -0.02 -1.07 16 48 H 0.16 -1.27 8.06 -2.91 -0.02 -1.29 16 49 H 0.18 -0.82 8.06 -2.91 -0.02 -0.84 16 50 H 0.09 0.03 7.82 -2.39 -0.02 0.02 16 51 H 0.38 0.02 8.60 -74.06 -0.64 -0.61 16 52 H 0.13 0.59 3.02 -2.91 -0.01 0.59 16 53 H 0.12 0.42 6.20 -2.91 -0.02 0.40 16 54 H 0.14 -0.26 7.40 -2.91 -0.02 -0.28 16 Total: 0.00 -15.31 439.18 5.85 -9.46 By element: Atomic # 1 Polarization: -9.80 SS G_CDS: 1.01 Total: -8.79 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.70 Total: 8.75 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -1.89 Total: -4.28 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: -2.57 Total: -5.36 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.61 Total: 0.22 kcal Total: -15.31 5.85 -9.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419802.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.765 kcal (2) G-P(sol) polarization free energy of solvation -15.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds