Wall clock time and date at job start Mon Mar 8 2021 09:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35874 * 117.00313 * 2 1 4 4 C 1.38811 * 119.93277 * 0.02562 * 3 2 1 5 5 C 1.37927 * 120.06358 * 179.97438 * 4 3 2 6 6 C 1.39354 * 119.93496 * 0.02562 * 5 4 3 7 7 C 1.48364 * 120.06668 * 179.97438 * 6 5 4 8 8 C 1.39349 * 120.12102 * 303.36632 * 7 6 5 9 9 C 1.38012 * 119.87440 * 179.97438 * 8 7 6 10 10 C 1.38327 * 120.12247 * 359.97417 * 9 8 7 11 11 Si 1.86798 * 119.87571 * 180.02562 * 10 9 8 12 12 C 1.86306 * 109.47155 * 90.00167 * 11 10 9 13 13 C 1.86304 * 109.47257 * 209.99937 * 11 10 9 14 14 C 1.86295 * 109.47476 * 330.00096 * 11 10 9 15 15 C 1.38319 * 120.24856 * 0.04623 * 10 9 8 16 16 C 1.38020 * 120.12450 * 359.97401 * 15 10 9 17 17 C 1.39407 * 119.87065 * 0.27349 * 6 5 4 18 18 C 1.50701 * 120.03506 * 179.72554 * 17 6 5 19 19 O 1.42901 * 109.46895 * 285.08964 * 18 17 6 20 20 Si 1.86294 * 109.47338 * 165.08574 * 18 17 6 21 21 H 1.48504 * 109.47156 * 59.99738 * 20 18 17 22 22 H 1.48500 * 109.47068 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46870 * 300.00024 * 20 18 17 24 24 C 1.37888 * 119.93049 * 359.44512 * 17 6 5 25 25 H 1.08993 * 109.47279 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46929 * 300.00174 * 1 2 3 27 27 H 1.09004 * 109.47079 * 59.99531 * 1 2 3 28 28 H 1.08002 * 119.96674 * 359.95316 * 4 3 2 29 29 H 1.07998 * 120.03337 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.06569 * 0.24640 * 8 7 6 31 31 H 1.08006 * 119.94134 * 179.97438 * 9 8 7 32 32 H 1.08996 * 109.47135 * 59.99790 * 12 11 10 33 33 H 1.08996 * 109.47254 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.46549 * 299.99754 * 12 11 10 35 35 H 1.09003 * 109.47024 * 59.99769 * 13 11 10 36 36 H 1.08996 * 109.47034 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.46724 * 299.99886 * 13 11 10 38 38 H 1.09000 * 109.47375 * 59.99543 * 14 11 10 39 39 H 1.08996 * 109.47599 * 179.97438 * 14 11 10 40 40 H 1.09003 * 109.46675 * 300.00152 * 14 11 10 41 41 H 1.08005 * 119.94090 * 179.97438 * 15 10 9 42 42 H 1.07992 * 120.06593 * 179.97438 * 16 15 10 43 43 H 1.08998 * 109.47008 * 45.08264 * 18 17 6 44 44 H 0.96701 * 113.99792 * 299.99969 * 19 18 17 45 45 H 1.07995 * 119.96247 * 180.25463 * 24 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2886 2.3739 0.0005 5 6 1.9120 3.6043 0.0011 6 6 3.3036 3.6787 0.0005 7 6 3.9772 5.0006 0.0005 8 6 3.7037 5.9249 -1.0058 9 6 4.3328 7.1532 -1.0006 10 6 5.2331 7.4678 0.0015 11 14 6.0802 9.1327 0.0023 12 6 5.0541 10.3511 0.9686 13 6 7.7610 8.9739 0.7900 14 6 6.2702 9.7337 -1.7508 15 6 5.5087 6.5541 1.0026 16 6 4.8856 5.3225 1.0071 17 6 4.0615 2.5087 -0.0063 18 6 5.5665 2.5849 -0.0132 19 8 6.0183 2.9630 -1.3151 20 14 6.2747 0.9200 0.4309 21 1 5.8257 -0.0895 -0.5613 22 1 7.7578 0.9951 0.4235 23 1 5.8051 0.5273 1.7838 24 6 3.4326 1.2816 -0.0010 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2101 2.3156 0.0002 29 1 1.3223 4.5090 0.0019 30 1 2.9974 5.6821 -1.7860 31 1 4.1220 7.8702 -1.7803 32 1 4.9429 9.9995 1.9943 33 1 5.5482 11.3226 0.9687 34 1 4.0708 10.4439 0.5077 35 1 8.3613 8.2610 0.2246 36 1 8.2554 9.9453 0.7900 37 1 7.6497 8.6224 1.8157 38 1 5.2868 9.8266 -2.2117 39 1 6.7641 10.7053 -1.7503 40 1 6.8705 9.0208 -2.3162 41 1 6.2127 6.8047 1.7824 42 1 5.1018 4.6096 1.7890 43 1 5.8961 3.3259 0.7151 44 1 5.7606 2.3474 -2.0150 45 1 4.0192 0.3749 -0.0021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:50 Heat of formation + Delta-G solvation = -65.059413 kcal Electronic energy + Delta-G solvation = -23989.039112 eV Core-core repulsion = 20673.867640 eV Total energy + Delta-G solvation = -3315.171472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46633 -40.00049 -38.62408 -37.17217 -33.11008 -32.77169 -31.70917 -29.95573 -29.38906 -28.38492 -28.36025 -28.05020 -26.68276 -24.19375 -23.18873 -22.54767 -21.60655 -19.26348 -18.05686 -17.76344 -17.19625 -16.76480 -16.54082 -16.19728 -15.88959 -15.53963 -15.29540 -14.81604 -14.77677 -14.53094 -14.21634 -14.14359 -14.01761 -13.79412 -13.72242 -13.61299 -13.41137 -13.30378 -13.20171 -13.11692 -13.04525 -12.67074 -12.38250 -12.19135 -12.07702 -11.86144 -11.78489 -11.60963 -10.95884 -10.84106 -10.70680 -10.34896 -10.01590 -9.70225 -9.62336 -8.85429 0.02731 0.22008 0.69353 0.69939 1.15980 1.44097 1.55125 1.80766 1.91927 1.93276 2.02919 2.22627 2.60912 2.62323 3.07825 3.50449 3.69753 3.74048 3.78269 4.07012 4.13974 4.16079 4.16956 4.23508 4.36038 4.45185 4.51351 4.55293 4.64878 4.74406 4.75651 4.77555 4.80524 4.81358 4.81655 4.83758 4.93438 5.05366 5.16145 5.27559 5.29753 5.46828 5.48116 5.53193 5.57420 5.58478 5.73305 5.75655 5.80857 6.26537 6.33990 6.59852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.136 3.864 4 C -0.201 4.201 5 C -0.064 4.064 6 C -0.061 4.061 7 C -0.022 4.022 8 C -0.115 4.115 9 C -0.085 4.085 10 C -0.370 4.370 11 Si 1.058 2.942 12 C -0.449 4.449 13 C -0.449 4.449 14 C -0.449 4.449 15 C -0.085 4.085 16 C -0.120 4.120 17 C -0.067 4.067 18 C -0.083 4.083 19 O -0.528 6.528 20 Si 0.941 3.059 21 H -0.249 1.249 22 H -0.251 1.251 23 H -0.247 1.247 24 C -0.160 4.160 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.374 0.626 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 0.547 0.109 2.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.090 3.910 4 C -0.219 4.219 5 C -0.082 4.082 6 C -0.061 4.061 7 C -0.022 4.022 8 C -0.133 4.133 9 C -0.103 4.103 10 C -0.412 4.412 11 Si 1.250 2.750 12 C -0.556 4.556 13 C -0.557 4.557 14 C -0.557 4.557 15 C -0.103 4.103 16 C -0.138 4.138 17 C -0.067 4.067 18 C -0.194 4.194 19 O -0.332 6.332 20 Si 0.763 3.237 21 H -0.173 1.173 22 H -0.175 1.175 23 H -0.170 1.170 24 C -0.178 4.178 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.220 0.780 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.337 -0.018 0.667 1.494 hybrid contribution -0.982 -0.175 -0.414 1.080 sum -2.319 -0.194 0.253 2.341 Atomic orbital electron populations 1.23122 0.77849 1.04380 1.01571 1.86082 1.21806 1.26685 1.88366 1.18960 0.91933 0.84417 0.95658 1.21243 1.00329 0.92053 1.08303 1.21050 0.93329 0.97320 0.96494 1.18552 0.92477 0.91870 1.03202 1.18578 0.96319 0.92045 0.95241 1.21194 1.00346 0.93828 0.97900 1.20969 0.95602 0.95911 0.97813 1.27328 1.03573 1.13509 0.96754 0.78186 0.66279 0.63314 0.67258 1.26128 1.09443 1.11148 1.08902 1.26133 1.17571 1.04683 1.07307 1.26135 1.04672 1.06139 1.18755 1.20966 0.98181 0.93211 0.97973 1.21211 0.97153 0.97187 0.98281 1.20098 0.96149 0.91641 0.98849 1.25140 0.91647 1.12605 0.89985 1.86576 1.77995 1.53064 1.15580 0.85823 0.80672 0.75489 0.81694 1.17303 1.17473 1.17037 1.20284 0.92047 0.97851 1.07604 0.87903 0.92385 0.92400 0.84924 0.85202 0.86514 0.86253 0.91212 0.91146 0.91234 0.91004 0.91076 0.91213 0.91241 0.91076 0.91018 0.86169 0.86373 0.85996 0.77964 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.65 10.49 -19.35 -0.20 -0.85 16 3 C 0.14 0.30 6.69 -39.14 -0.26 0.03 16 4 C -0.20 -0.19 9.02 -39.48 -0.36 -0.54 16 5 C -0.06 -0.08 9.62 -39.28 -0.38 -0.46 16 6 C -0.06 -0.13 5.40 -104.88 -0.57 -0.69 16 7 C -0.02 -0.05 4.85 -104.90 -0.51 -0.56 16 8 C -0.11 -0.22 9.63 -39.25 -0.38 -0.60 16 9 C -0.09 -0.10 9.28 -39.63 -0.37 -0.46 16 10 C -0.37 -0.21 4.60 -39.52 -0.18 -0.39 16 11 Si 1.06 -1.95 12.31 -169.99 -2.09 -4.04 16 12 C -0.45 0.46 8.65 101.05 0.87 1.33 16 13 C -0.45 0.52 8.52 101.05 0.86 1.38 16 14 C -0.45 0.50 8.52 101.05 0.86 1.36 16 15 C -0.09 -0.09 9.28 -39.63 -0.37 -0.46 16 16 C -0.12 -0.22 7.95 -39.24 -0.31 -0.53 16 17 C -0.07 -0.12 5.26 -104.31 -0.55 -0.67 16 18 C -0.08 -0.08 2.07 36.01 0.07 -0.01 16 19 O -0.53 -0.80 12.82 -35.23 -0.45 -1.25 16 20 Si 0.94 0.54 25.48 -169.99 -4.33 -3.79 16 21 H -0.25 -0.16 6.74 56.52 0.38 0.22 16 22 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 23 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 24 C -0.16 -0.33 8.59 -39.48 -0.34 -0.67 16 25 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 26 H 0.06 -0.14 7.65 -51.93 -0.40 -0.54 16 27 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 28 H 0.13 -0.15 6.28 -52.49 -0.33 -0.48 16 29 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 30 H 0.12 0.11 8.06 -52.49 -0.42 -0.32 16 31 H 0.12 -0.09 7.40 -52.48 -0.39 -0.47 16 32 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 33 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 35 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.07 -0.10 7.67 -51.93 -0.40 -0.49 16 38 H 0.07 -0.09 7.67 -51.93 -0.40 -0.49 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 41 H 0.12 -0.11 7.40 -52.48 -0.39 -0.50 16 42 H 0.12 0.06 7.02 -52.49 -0.37 -0.31 16 43 H 0.12 0.08 4.94 -51.93 -0.26 -0.17 16 44 H 0.37 -0.60 8.70 45.56 0.40 -0.20 16 45 H 0.13 0.18 4.88 -52.49 -0.26 -0.07 16 LS Contribution 367.04 15.07 5.53 5.53 Total: 0.00 -5.63 367.04 -8.61 -14.24 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: -6.16 Total: -8.84 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.90 Total: -0.99 kcal Atomic # 8 Polarization: -1.44 SS G_CDS: -0.65 Total: -2.10 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: -6.42 Total: -7.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -5.63 -8.61 -14.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.823 kcal (2) G-P(sol) polarization free energy of solvation -5.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds