Wall clock time and date at job start Mon Mar 8 2021 09:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35874 * 117.00313 * 2 1 4 4 C 1.38811 * 119.93277 * 0.02562 * 3 2 1 5 5 C 1.37927 * 120.06358 * 179.97438 * 4 3 2 6 6 C 1.39354 * 119.93496 * 0.02562 * 5 4 3 7 7 C 1.48364 * 120.06668 * 179.97438 * 6 5 4 8 8 C 1.39349 * 120.12102 * 303.36632 * 7 6 5 9 9 C 1.38012 * 119.87440 * 179.97438 * 8 7 6 10 10 C 1.38327 * 120.12247 * 359.97417 * 9 8 7 11 11 Si 1.86798 * 119.87571 * 180.02562 * 10 9 8 12 12 C 1.86306 * 109.47155 * 90.00167 * 11 10 9 13 13 C 1.86304 * 109.47257 * 209.99937 * 11 10 9 14 14 C 1.86295 * 109.47476 * 330.00096 * 11 10 9 15 15 C 1.38319 * 120.24856 * 0.04623 * 10 9 8 16 16 C 1.38020 * 120.12450 * 359.97401 * 15 10 9 17 17 C 1.39407 * 119.87065 * 0.27349 * 6 5 4 18 18 C 1.50701 * 120.03506 * 179.72554 * 17 6 5 19 19 O 1.42901 * 109.46895 * 285.08964 * 18 17 6 20 20 Si 1.86294 * 109.47338 * 165.08574 * 18 17 6 21 21 H 1.48504 * 109.47156 * 59.99738 * 20 18 17 22 22 H 1.48500 * 109.47068 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46870 * 300.00024 * 20 18 17 24 24 C 1.37888 * 119.93049 * 359.44512 * 17 6 5 25 25 H 1.08993 * 109.47279 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46929 * 300.00174 * 1 2 3 27 27 H 1.09004 * 109.47079 * 59.99531 * 1 2 3 28 28 H 1.08002 * 119.96674 * 359.95316 * 4 3 2 29 29 H 1.07998 * 120.03337 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.06569 * 0.24640 * 8 7 6 31 31 H 1.08006 * 119.94134 * 179.97438 * 9 8 7 32 32 H 1.08996 * 109.47135 * 59.99790 * 12 11 10 33 33 H 1.08996 * 109.47254 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.46549 * 299.99754 * 12 11 10 35 35 H 1.09003 * 109.47024 * 59.99769 * 13 11 10 36 36 H 1.08996 * 109.47034 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.46724 * 299.99886 * 13 11 10 38 38 H 1.09000 * 109.47375 * 59.99543 * 14 11 10 39 39 H 1.08996 * 109.47599 * 179.97438 * 14 11 10 40 40 H 1.09003 * 109.46675 * 300.00152 * 14 11 10 41 41 H 1.08005 * 119.94090 * 179.97438 * 15 10 9 42 42 H 1.07992 * 120.06593 * 179.97438 * 16 15 10 43 43 H 1.08998 * 109.47008 * 45.08264 * 18 17 6 44 44 H 0.96701 * 113.99792 * 299.99969 * 19 18 17 45 45 H 1.07995 * 119.96247 * 180.25463 * 24 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2886 2.3739 0.0005 5 6 1.9120 3.6043 0.0011 6 6 3.3036 3.6787 0.0005 7 6 3.9772 5.0006 0.0005 8 6 3.7037 5.9249 -1.0058 9 6 4.3328 7.1532 -1.0006 10 6 5.2331 7.4678 0.0015 11 14 6.0802 9.1327 0.0023 12 6 5.0541 10.3511 0.9686 13 6 7.7610 8.9739 0.7900 14 6 6.2702 9.7337 -1.7508 15 6 5.5087 6.5541 1.0026 16 6 4.8856 5.3225 1.0071 17 6 4.0615 2.5087 -0.0063 18 6 5.5665 2.5849 -0.0132 19 8 6.0183 2.9630 -1.3151 20 14 6.2747 0.9200 0.4309 21 1 5.8257 -0.0895 -0.5613 22 1 7.7578 0.9951 0.4235 23 1 5.8051 0.5273 1.7838 24 6 3.4326 1.2816 -0.0010 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2101 2.3156 0.0002 29 1 1.3223 4.5090 0.0019 30 1 2.9974 5.6821 -1.7860 31 1 4.1220 7.8702 -1.7803 32 1 4.9429 9.9995 1.9943 33 1 5.5482 11.3226 0.9687 34 1 4.0708 10.4439 0.5077 35 1 8.3613 8.2610 0.2246 36 1 8.2554 9.9453 0.7900 37 1 7.6497 8.6224 1.8157 38 1 5.2868 9.8266 -2.2117 39 1 6.7641 10.7053 -1.7503 40 1 6.8705 9.0208 -2.3162 41 1 6.2127 6.8047 1.7824 42 1 5.1018 4.6096 1.7890 43 1 5.8961 3.3259 0.7151 44 1 5.7606 2.3474 -2.0150 45 1 4.0192 0.3749 -0.0021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:49 Heat of formation + Delta-G solvation = -55.775684 kcal Electronic energy + Delta-G solvation = -23988.636540 eV Core-core repulsion = 20673.867640 eV Total energy + Delta-G solvation = -3314.768900 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52686 -40.04288 -38.67706 -37.24733 -33.16290 -32.84325 -31.75575 -29.94636 -29.29841 -28.27312 -28.24615 -28.01602 -26.73199 -24.26099 -23.24160 -22.61105 -21.66203 -19.31640 -18.09851 -17.82916 -17.24873 -16.76406 -16.58705 -16.25933 -15.93572 -15.59798 -15.34509 -14.87778 -14.81764 -14.56020 -14.23091 -14.03926 -13.94219 -13.72088 -13.68658 -13.60769 -13.38807 -13.25565 -13.08944 -13.06652 -12.94271 -12.66165 -12.41028 -12.24940 -12.12109 -11.90462 -11.81823 -11.67783 -10.87144 -10.72770 -10.69580 -10.42425 -10.09759 -9.75558 -9.69661 -8.93082 -0.05237 0.13767 0.62547 0.62657 1.09163 1.36952 1.47049 1.83718 1.90637 2.06131 2.14410 2.24566 2.53042 2.71233 3.02516 3.46627 3.64716 3.69557 3.74734 4.08943 4.12696 4.16771 4.20651 4.34543 4.38328 4.38968 4.51121 4.61147 4.69820 4.74873 4.85376 4.86962 4.87475 4.90989 4.91685 4.92452 4.93055 5.00201 5.09916 5.22190 5.23964 5.39828 5.46369 5.60402 5.64915 5.67572 5.70105 5.73266 5.75091 6.22786 6.31315 6.65194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.123 3.877 4 C -0.199 4.199 5 C -0.068 4.068 6 C -0.071 4.071 7 C -0.034 4.034 8 C -0.129 4.129 9 C -0.096 4.096 10 C -0.382 4.382 11 Si 1.123 2.877 12 C -0.461 4.461 13 C -0.462 4.462 14 C -0.462 4.462 15 C -0.097 4.097 16 C -0.135 4.135 17 C -0.070 4.070 18 C -0.082 4.082 19 O -0.541 6.541 20 Si 0.972 3.028 21 H -0.250 1.250 22 H -0.266 1.266 23 H -0.257 1.257 24 C -0.172 4.172 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.153 0.847 29 H 0.142 0.858 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.385 0.615 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 1.141 0.082 2.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.078 3.922 4 C -0.218 4.218 5 C -0.086 4.086 6 C -0.072 4.072 7 C -0.034 4.034 8 C -0.147 4.147 9 C -0.114 4.114 10 C -0.422 4.422 11 Si 1.310 2.690 12 C -0.567 4.567 13 C -0.569 4.569 14 C -0.569 4.569 15 C -0.114 4.114 16 C -0.153 4.153 17 C -0.071 4.071 18 C -0.192 4.192 19 O -0.348 6.348 20 Si 0.796 3.204 21 H -0.174 1.174 22 H -0.191 1.191 23 H -0.181 1.181 24 C -0.191 4.191 25 H 0.135 0.865 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.160 0.840 30 H 0.139 0.861 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.234 0.766 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.699 0.559 0.630 1.896 hybrid contribution -0.906 -0.364 -0.411 1.059 sum -2.605 0.194 0.219 2.621 Atomic orbital electron populations 1.23370 0.76194 1.05669 1.02466 1.86055 1.23645 1.26790 1.88412 1.19142 0.92168 0.84954 0.95956 1.21453 1.01334 0.91482 1.07509 1.21243 0.93219 0.97969 0.96191 1.18705 0.93007 0.91950 1.03523 1.18692 0.96760 0.92265 0.95635 1.21376 1.00877 0.94335 0.98141 1.21265 0.95625 0.96020 0.98473 1.27919 1.03305 1.14762 0.96208 0.77209 0.64763 0.60990 0.66007 1.26264 1.09670 1.11765 1.09005 1.26274 1.18184 1.04800 1.07617 1.26277 1.04829 1.06317 1.19460 1.21280 0.98425 0.93083 0.98650 1.21422 0.97442 0.97869 0.98579 1.20156 0.96460 0.91561 0.98890 1.25170 0.91335 1.12863 0.89863 1.86537 1.78163 1.53933 1.16154 0.85374 0.79165 0.74963 0.80892 1.17388 1.19059 1.18092 1.20411 0.92465 0.98034 1.08167 0.86537 0.91489 0.91448 0.82937 0.84045 0.86128 0.84687 0.91396 0.90729 0.91405 0.91437 0.90707 0.90901 0.90962 0.90701 0.91470 0.84504 0.85804 0.86014 0.76607 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -1.48 10.49 -92.14 -0.97 -2.45 16 3 C 0.12 0.60 6.69 22.55 0.15 0.76 16 4 C -0.20 -0.38 9.02 22.33 0.20 -0.18 16 5 C -0.07 -0.19 9.62 22.46 0.22 0.02 16 6 C -0.07 -0.36 5.40 -20.03 -0.11 -0.47 16 7 C -0.03 -0.18 4.85 -20.04 -0.10 -0.28 16 8 C -0.13 -0.59 9.63 22.48 0.22 -0.37 16 9 C -0.10 -0.23 9.28 22.24 0.21 -0.03 16 10 C -0.38 -0.42 4.60 22.31 0.10 -0.32 16 11 Si 1.12 -4.80 12.31 68.60 0.84 -3.95 16 12 C -0.46 1.23 8.65 113.37 0.98 2.21 16 13 C -0.46 1.33 8.52 113.37 0.97 2.30 16 14 C -0.46 1.30 8.52 113.37 0.97 2.27 16 15 C -0.10 -0.23 9.28 22.24 0.21 -0.02 16 16 C -0.14 -0.60 7.95 22.49 0.18 -0.42 16 17 C -0.07 -0.32 5.26 -19.67 -0.10 -0.43 16 18 C -0.08 -0.24 2.07 71.24 0.15 -0.10 16 19 O -0.54 -2.11 12.82 -148.98 -1.91 -4.02 16 20 Si 0.97 1.96 25.48 68.60 1.75 3.71 16 21 H -0.25 -0.47 6.74 99.48 0.67 0.20 16 22 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 23 H -0.26 -0.88 7.11 99.48 0.71 -0.17 16 24 C -0.17 -0.89 8.59 22.33 0.19 -0.70 16 25 H 0.12 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.07 -0.36 7.65 -2.39 -0.02 -0.38 16 27 H 0.07 -0.37 7.66 -2.38 -0.02 -0.39 16 28 H 0.15 -0.46 6.28 -2.91 -0.02 -0.47 16 29 H 0.14 -0.04 8.06 -2.91 -0.02 -0.06 16 30 H 0.12 0.32 8.06 -2.91 -0.02 0.29 16 31 H 0.14 -0.23 7.40 -2.91 -0.02 -0.25 16 32 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 35 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 37 H 0.07 -0.25 7.67 -2.39 -0.02 -0.27 16 38 H 0.07 -0.24 7.67 -2.39 -0.02 -0.26 16 39 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 40 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 41 H 0.14 -0.27 7.40 -2.91 -0.02 -0.30 16 42 H 0.12 0.26 7.02 -2.91 -0.02 0.24 16 43 H 0.12 0.31 4.94 -2.39 -0.01 0.30 16 44 H 0.39 -0.91 8.70 -74.06 -0.64 -1.55 16 45 H 0.13 0.52 4.88 -2.91 -0.01 0.50 16 Total: 0.00 -12.91 367.04 6.31 -6.60 By element: Atomic # 1 Polarization: -6.24 SS G_CDS: 1.06 Total: -5.18 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.54 Total: 5.29 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -2.88 Total: -6.47 kcal Atomic # 14 Polarization: -2.84 SS G_CDS: 2.59 Total: -0.25 kcal Total: -12.91 6.31 -6.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.175 kcal (2) G-P(sol) polarization free energy of solvation -12.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds