Wall clock time and date at job start Mon Mar 8 2021 09:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86301 * 109.47106 * 2 1 4 4 C 1.86303 * 109.47093 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47375 * 120.00388 * 2 1 3 6 6 C 1.38320 * 119.87563 * 89.99767 * 5 2 1 7 7 C 1.38014 * 120.12179 * 180.02562 * 6 5 2 8 8 C 1.39365 * 119.87512 * 359.97438 * 7 6 5 9 9 C 1.48335 * 120.12213 * 179.72626 * 8 7 6 10 10 C 1.39338 * 120.09374 * 309.72654 * 9 8 7 11 11 C 1.38010 * 119.97261 * 179.68703 * 10 9 8 12 12 C 1.50699 * 119.87129 * 180.33126 * 11 10 9 13 13 O 1.42900 * 109.47052 * 65.27941 * 12 11 10 14 14 Si 1.86296 * 109.47121 * 185.27949 * 12 11 10 15 15 H 1.48500 * 109.47064 * 60.00197 * 14 12 11 16 16 H 1.48507 * 109.47150 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47313 * 299.99840 * 14 12 11 18 18 C 1.38282 * 120.25412 * 0.61114 * 11 10 9 19 19 C 1.38770 * 120.33413 * 359.73364 * 18 11 10 20 20 C 1.38809 * 119.89201 * 359.89722 * 19 18 11 21 21 O 1.36027 * 120.85831 * 180.25526 * 20 19 18 22 22 C 1.43168 * 116.72814 * 342.84258 * 21 20 19 23 23 C 1.53479 * 108.23054 * 46.11665 * 22 21 20 24 24 O 1.36132 * 119.35698 * 179.81708 * 19 18 11 25 25 C 1.39357 * 119.75427 * 0.02562 * 8 7 6 26 26 C 1.38010 * 119.87422 * 0.02562 * 25 8 7 27 27 H 1.09001 * 109.47295 * 300.00035 * 1 2 3 28 28 H 1.09000 * 109.47048 * 59.99597 * 1 2 3 29 29 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47164 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47496 * 300.00128 * 3 2 1 32 32 H 1.08996 * 109.47420 * 60.00155 * 3 2 1 33 33 H 1.09001 * 109.47151 * 300.00227 * 4 2 1 34 34 H 1.09000 * 109.47053 * 60.00150 * 4 2 1 35 35 H 1.09003 * 109.47086 * 179.97438 * 4 2 1 36 36 H 1.07993 * 119.94182 * 359.97438 * 6 5 2 37 37 H 1.08005 * 120.06329 * 180.02562 * 7 6 5 38 38 H 1.07996 * 120.01000 * 359.95941 * 10 9 8 39 39 H 1.08997 * 109.46772 * 305.28286 * 12 11 10 40 40 H 0.96704 * 114.00256 * 60.00205 * 13 12 11 41 41 H 1.08011 * 119.83425 * 179.75197 * 18 11 10 42 42 H 1.08999 * 109.71739 * 165.79956 * 22 21 20 43 43 H 1.09000 * 109.71305 * 286.43204 * 22 21 20 44 44 H 1.08993 * 109.71315 * 59.99725 * 23 22 21 45 45 H 1.08999 * 109.71057 * 180.63871 * 23 22 21 46 46 H 1.08005 * 120.06469 * 179.97438 * 25 8 7 47 47 H 1.08009 * 119.93807 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7153 -2.2441 1.4879 7 6 3.1749 -2.9000 2.6119 8 6 3.4081 -2.1858 3.7857 9 6 3.8963 -2.8862 4.9987 10 6 3.2488 -4.0342 5.4508 11 6 3.7090 -4.6875 6.5760 12 6 3.0115 -5.9331 7.0587 13 8 3.1616 -6.9700 6.0869 14 14 3.7643 -6.4807 8.6724 15 1 3.6083 -5.4032 9.6822 16 1 3.0773 -7.7085 9.1477 17 1 5.2078 -6.7674 8.4732 18 6 4.8042 -4.2004 7.2655 19 6 5.4536 -3.0540 6.8296 20 6 5.0038 -2.3933 5.6948 21 8 5.6286 -1.2710 5.2472 22 6 6.4933 -0.6030 6.1723 23 6 7.3787 -1.6580 6.8495 24 8 6.5275 -2.5898 7.5256 25 6 3.1750 -0.8123 3.8174 26 6 2.7144 -0.1669 2.6877 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1206 2.2704 -0.8899 32 1 2.1207 2.2703 0.8899 33 1 2.1206 -1.9058 -1.5213 34 1 2.1206 -0.3643 -2.4111 35 1 3.5740 -0.8778 -1.5214 36 1 2.5339 -2.7967 0.5779 37 1 3.3543 -3.9647 2.5816 38 1 2.3898 -4.4150 4.9184 39 1 1.9521 -5.7227 7.2048 40 1 4.0808 -7.2097 5.9061 41 1 5.1563 -4.7148 8.1475 42 1 7.1180 0.1141 5.6397 43 1 5.8978 -0.0853 6.9242 44 1 7.9702 -2.1795 6.0970 45 1 8.0405 -1.1757 7.5689 46 1 3.3537 -0.2539 4.7245 47 1 2.5330 0.8976 2.7113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:59 Heat of formation + Delta-G solvation = -99.479333 kcal Electronic energy + Delta-G solvation = -27753.970203 eV Core-core repulsion = 23990.397838 eV Total energy + Delta-G solvation = -3763.572365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38227 -40.07400 -39.28478 -38.21230 -37.19890 -33.54525 -32.47880 -31.74021 -30.15452 -29.82016 -29.33454 -28.41049 -28.37602 -26.89669 -25.21031 -24.41344 -23.26796 -21.82607 -21.43930 -19.65891 -18.77824 -18.44595 -17.63648 -17.31060 -16.51324 -16.26079 -16.09090 -16.05289 -15.72842 -15.63640 -15.36371 -15.21061 -15.04403 -14.47509 -14.26285 -14.15096 -14.13675 -14.05215 -13.80965 -13.70040 -13.37294 -13.30174 -13.22728 -13.13027 -13.06866 -12.82203 -12.39928 -12.20574 -12.16423 -12.06224 -11.82245 -11.75982 -11.51336 -11.00023 -10.86878 -10.75292 -10.40996 -10.01711 -9.66870 -9.15037 -8.99983 -0.16126 0.22788 0.64025 0.68527 1.15158 1.44456 1.53404 1.77456 1.89267 1.91896 1.93761 2.00680 2.15907 2.55034 2.59456 3.05648 3.13194 3.41883 3.51007 3.70307 3.76665 3.82459 3.98250 4.10062 4.16729 4.18487 4.25195 4.37372 4.39737 4.50677 4.60206 4.71082 4.73147 4.74790 4.75637 4.78445 4.79451 4.79945 4.81089 4.91907 5.03817 5.12731 5.28595 5.36780 5.45408 5.48954 5.54108 5.57067 5.65236 5.72724 5.74960 5.86775 6.23228 6.35242 6.54099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.367 4.367 6 C -0.090 4.090 7 C -0.114 4.114 8 C -0.032 4.032 9 C -0.042 4.042 10 C -0.072 4.072 11 C -0.115 4.115 12 C -0.074 4.074 13 O -0.537 6.537 14 Si 0.946 3.054 15 H -0.249 1.249 16 H -0.252 1.252 17 H -0.251 1.251 18 C -0.119 4.119 19 C 0.057 3.943 20 C 0.069 3.931 21 O -0.295 6.295 22 C 0.018 3.982 23 C 0.020 3.980 24 O -0.306 6.306 25 C -0.100 4.100 26 C -0.090 4.090 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.377 0.623 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.117 0.883 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 1.979 -0.491 2.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.409 4.409 6 C -0.107 4.107 7 C -0.132 4.132 8 C -0.032 4.032 9 C -0.043 4.043 10 C -0.091 4.091 11 C -0.116 4.116 12 C -0.185 4.185 13 O -0.342 6.342 14 Si 0.769 3.231 15 H -0.172 1.172 16 H -0.176 1.176 17 H -0.174 1.174 18 C -0.137 4.137 19 C 0.012 3.988 20 C 0.024 3.976 21 O -0.209 6.209 22 C -0.058 4.058 23 C -0.056 4.056 24 O -0.220 6.220 25 C -0.118 4.118 26 C -0.108 4.108 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.139 0.861 40 H 0.224 0.776 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.143 0.857 46 H 0.135 0.865 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.157 1.766 0.362 2.142 hybrid contribution 0.820 0.324 -0.101 0.888 sum 1.977 2.090 0.261 2.889 Atomic orbital electron populations 1.26121 1.20499 1.04574 1.04419 0.78192 0.66864 0.66108 0.63869 1.26134 1.06432 1.18636 1.04483 1.26133 1.06439 1.08063 1.15051 1.27388 1.03932 0.99493 1.10091 1.20978 0.97550 0.94596 0.97619 1.21278 0.99801 0.99659 0.92509 1.18517 0.99328 0.93346 0.92035 1.18175 0.93293 0.96635 0.96158 1.20875 0.99646 0.92897 0.95646 1.19921 0.96418 0.98447 0.96831 1.24903 1.05587 0.86128 1.01872 1.86525 1.31915 1.54049 1.61670 0.85735 0.80075 0.81160 0.76180 1.17243 1.17615 1.17442 1.20335 0.97067 0.94656 1.01639 1.18605 0.90810 0.95380 0.94017 1.18844 0.94568 0.88932 0.95280 1.86387 1.58632 1.36874 1.39045 1.23703 0.93219 0.94785 0.94068 1.23686 0.92205 0.90661 0.99012 1.86343 1.35731 1.59814 1.40140 1.21182 0.98716 0.93334 0.98571 1.20981 0.97682 0.99519 0.92633 0.91190 0.91116 0.91149 0.91096 0.91028 0.91208 0.91156 0.91029 0.91088 0.86049 0.86116 0.84250 0.86114 0.77591 0.84927 0.85756 0.90235 0.90228 0.85738 0.86514 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.47 8.65 101.05 0.87 1.34 16 2 Si 1.06 -2.06 12.31 -169.99 -2.09 -4.16 16 3 C -0.45 0.60 8.52 101.05 0.86 1.46 16 4 C -0.45 0.59 8.52 101.05 0.86 1.45 16 5 C -0.37 -0.22 4.60 -39.52 -0.18 -0.41 16 6 C -0.09 -0.10 9.28 -39.63 -0.37 -0.47 16 7 C -0.11 -0.25 9.52 -39.24 -0.37 -0.62 16 8 C -0.03 -0.10 5.25 -104.91 -0.55 -0.65 16 9 C -0.04 -0.12 5.48 -104.75 -0.57 -0.70 16 10 C -0.07 -0.13 9.14 -39.26 -0.36 -0.49 16 11 C -0.12 -0.14 5.34 -104.69 -0.56 -0.70 16 12 C -0.07 0.01 2.79 36.01 0.10 0.11 16 13 O -0.54 -0.17 12.83 -35.23 -0.45 -0.62 16 14 Si 0.95 -0.09 25.13 -169.99 -4.27 -4.36 16 15 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 16 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 17 H -0.25 -0.05 7.04 56.52 0.40 0.35 16 18 C -0.12 -0.25 8.58 -39.37 -0.34 -0.59 16 19 C 0.06 0.17 6.49 -39.17 -0.25 -0.08 16 20 C 0.07 0.22 6.41 -38.79 -0.25 -0.03 16 21 O -0.30 -0.73 8.70 -32.68 -0.28 -1.01 16 22 C 0.02 -0.02 7.26 37.41 0.27 0.25 16 23 C 0.02 -0.02 7.26 37.41 0.27 0.25 16 24 O -0.31 -0.74 10.42 -33.01 -0.34 -1.09 16 25 C -0.10 -0.26 8.76 -39.25 -0.34 -0.60 16 26 C -0.09 -0.12 9.28 -39.63 -0.37 -0.49 16 27 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 33 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.12 -0.10 7.40 -52.49 -0.39 -0.49 16 37 H 0.12 0.12 8.05 -52.48 -0.42 -0.30 16 38 H 0.14 0.13 8.04 -52.49 -0.42 -0.30 16 39 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 40 H 0.38 -1.04 8.70 45.56 0.40 -0.64 16 41 H 0.13 0.15 4.83 -52.48 -0.25 -0.10 16 42 H 0.12 -0.44 8.14 -51.93 -0.42 -0.86 16 43 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 44 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 45 H 0.12 -0.46 8.14 -51.93 -0.42 -0.88 16 46 H 0.12 0.25 7.68 -52.48 -0.40 -0.15 16 47 H 0.12 -0.07 7.40 -52.48 -0.39 -0.46 16 LS Contribution 385.50 15.07 5.81 5.81 Total: 0.00 -6.54 385.50 -9.39 -15.92 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: -6.48 Total: -9.55 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.28 Total: -0.95 kcal Atomic # 8 Polarization: -1.64 SS G_CDS: -1.08 Total: -2.72 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: -6.36 Total: -8.52 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -6.54 -9.39 -15.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.555 kcal (2) G-P(sol) polarization free energy of solvation -6.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds