Wall clock time and date at job start Mon Mar 8 2021 09:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86301 * 109.47106 * 2 1 4 4 C 1.86303 * 109.47093 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47375 * 120.00388 * 2 1 3 6 6 C 1.38320 * 119.87563 * 89.99767 * 5 2 1 7 7 C 1.38014 * 120.12179 * 180.02562 * 6 5 2 8 8 C 1.39365 * 119.87512 * 359.97438 * 7 6 5 9 9 C 1.48335 * 120.12213 * 179.72626 * 8 7 6 10 10 C 1.39338 * 120.09374 * 309.72654 * 9 8 7 11 11 C 1.38010 * 119.97261 * 179.68703 * 10 9 8 12 12 C 1.50699 * 119.87129 * 180.33126 * 11 10 9 13 13 O 1.42900 * 109.47052 * 65.27941 * 12 11 10 14 14 Si 1.86296 * 109.47121 * 185.27949 * 12 11 10 15 15 H 1.48500 * 109.47064 * 60.00197 * 14 12 11 16 16 H 1.48507 * 109.47150 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47313 * 299.99840 * 14 12 11 18 18 C 1.38282 * 120.25412 * 0.61114 * 11 10 9 19 19 C 1.38770 * 120.33413 * 359.73364 * 18 11 10 20 20 C 1.38809 * 119.89201 * 359.89722 * 19 18 11 21 21 O 1.36027 * 120.85831 * 180.25526 * 20 19 18 22 22 C 1.43168 * 116.72814 * 342.84258 * 21 20 19 23 23 C 1.53479 * 108.23054 * 46.11665 * 22 21 20 24 24 O 1.36132 * 119.35698 * 179.81708 * 19 18 11 25 25 C 1.39357 * 119.75427 * 0.02562 * 8 7 6 26 26 C 1.38010 * 119.87422 * 0.02562 * 25 8 7 27 27 H 1.09001 * 109.47295 * 300.00035 * 1 2 3 28 28 H 1.09000 * 109.47048 * 59.99597 * 1 2 3 29 29 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47164 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47496 * 300.00128 * 3 2 1 32 32 H 1.08996 * 109.47420 * 60.00155 * 3 2 1 33 33 H 1.09001 * 109.47151 * 300.00227 * 4 2 1 34 34 H 1.09000 * 109.47053 * 60.00150 * 4 2 1 35 35 H 1.09003 * 109.47086 * 179.97438 * 4 2 1 36 36 H 1.07993 * 119.94182 * 359.97438 * 6 5 2 37 37 H 1.08005 * 120.06329 * 180.02562 * 7 6 5 38 38 H 1.07996 * 120.01000 * 359.95941 * 10 9 8 39 39 H 1.08997 * 109.46772 * 305.28286 * 12 11 10 40 40 H 0.96704 * 114.00256 * 60.00205 * 13 12 11 41 41 H 1.08011 * 119.83425 * 179.75197 * 18 11 10 42 42 H 1.08999 * 109.71739 * 165.79956 * 22 21 20 43 43 H 1.09000 * 109.71305 * 286.43204 * 22 21 20 44 44 H 1.08993 * 109.71315 * 59.99725 * 23 22 21 45 45 H 1.08999 * 109.71057 * 180.63871 * 23 22 21 46 46 H 1.08005 * 120.06469 * 179.97438 * 25 8 7 47 47 H 1.08009 * 119.93807 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7153 -2.2441 1.4879 7 6 3.1749 -2.9000 2.6119 8 6 3.4081 -2.1858 3.7857 9 6 3.8963 -2.8862 4.9987 10 6 3.2488 -4.0342 5.4508 11 6 3.7090 -4.6875 6.5760 12 6 3.0115 -5.9331 7.0587 13 8 3.1616 -6.9700 6.0869 14 14 3.7643 -6.4807 8.6724 15 1 3.6083 -5.4032 9.6822 16 1 3.0773 -7.7085 9.1477 17 1 5.2078 -6.7674 8.4732 18 6 4.8042 -4.2004 7.2655 19 6 5.4536 -3.0540 6.8296 20 6 5.0038 -2.3933 5.6948 21 8 5.6286 -1.2710 5.2472 22 6 6.4933 -0.6030 6.1723 23 6 7.3787 -1.6580 6.8495 24 8 6.5275 -2.5898 7.5256 25 6 3.1750 -0.8123 3.8174 26 6 2.7144 -0.1669 2.6877 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5740 1.7565 -0.0005 31 1 2.1206 2.2704 -0.8899 32 1 2.1207 2.2703 0.8899 33 1 2.1206 -1.9058 -1.5213 34 1 2.1206 -0.3643 -2.4111 35 1 3.5740 -0.8778 -1.5214 36 1 2.5339 -2.7967 0.5779 37 1 3.3543 -3.9647 2.5816 38 1 2.3898 -4.4150 4.9184 39 1 1.9521 -5.7227 7.2048 40 1 4.0808 -7.2097 5.9061 41 1 5.1563 -4.7148 8.1475 42 1 7.1180 0.1141 5.6397 43 1 5.8978 -0.0853 6.9242 44 1 7.9702 -2.1795 6.0970 45 1 8.0405 -1.1757 7.5689 46 1 3.3537 -0.2539 4.7245 47 1 2.5330 0.8976 2.7113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:58 Heat of formation + Delta-G solvation = -91.157297 kcal Electronic energy + Delta-G solvation = -27753.609332 eV Core-core repulsion = 23990.397838 eV Total energy + Delta-G solvation = -3763.211494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.45943 -40.14816 -39.34889 -38.29645 -37.22952 -33.63221 -32.50003 -31.81417 -30.19975 -29.85220 -29.26072 -28.27984 -28.25224 -26.94649 -25.24077 -24.49623 -23.34569 -21.89841 -21.49266 -19.74374 -18.82343 -18.50146 -17.68455 -17.34903 -16.57850 -16.31234 -16.13367 -16.07612 -15.78877 -15.70251 -15.42326 -15.28065 -15.06309 -14.49362 -14.30646 -14.16425 -14.03913 -13.97864 -13.73143 -13.67990 -13.37054 -13.29159 -13.09776 -13.08218 -12.95233 -12.82155 -12.43800 -12.25245 -12.17928 -12.06578 -11.88374 -11.79771 -11.55834 -10.91410 -10.75388 -10.74022 -10.42868 -10.10122 -9.77513 -9.26915 -9.11228 -0.28604 0.10017 0.54279 0.57924 1.14627 1.42952 1.51083 1.87157 1.88399 1.90831 2.04935 2.10992 2.16250 2.43474 2.69061 2.97613 3.11394 3.42908 3.52352 3.69348 3.81003 3.85359 3.96184 4.08483 4.10269 4.13850 4.19354 4.43059 4.47134 4.53230 4.56210 4.66628 4.71288 4.82109 4.86057 4.86326 4.89251 4.90582 4.91461 4.92587 4.95186 5.03099 5.20265 5.25586 5.39043 5.54447 5.60377 5.61068 5.65344 5.69343 5.72518 5.79837 6.16258 6.26360 6.68180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.125 2.875 3 C -0.461 4.461 4 C -0.461 4.461 5 C -0.378 4.378 6 C -0.098 4.098 7 C -0.128 4.128 8 C -0.048 4.048 9 C -0.053 4.053 10 C -0.076 4.076 11 C -0.111 4.111 12 C -0.070 4.070 13 O -0.548 6.548 14 Si 0.976 3.024 15 H -0.261 1.261 16 H -0.267 1.267 17 H -0.254 1.254 18 C -0.129 4.129 19 C 0.044 3.956 20 C 0.058 3.942 21 O -0.311 6.311 22 C 0.013 3.987 23 C 0.015 3.985 24 O -0.322 6.322 25 C -0.115 4.115 26 C -0.099 4.099 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.389 0.611 41 H 0.139 0.861 42 H 0.150 0.850 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.153 0.847 46 H 0.112 0.888 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 2.377 -1.216 2.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.312 2.688 3 C -0.569 4.569 4 C -0.568 4.568 5 C -0.417 4.417 6 C -0.116 4.116 7 C -0.146 4.146 8 C -0.048 4.048 9 C -0.054 4.054 10 C -0.094 4.094 11 C -0.111 4.111 12 C -0.180 4.180 13 O -0.355 6.355 14 Si 0.801 3.199 15 H -0.185 1.185 16 H -0.192 1.192 17 H -0.178 1.178 18 C -0.147 4.147 19 C -0.001 4.001 20 C 0.012 3.988 21 O -0.226 6.226 22 C -0.062 4.062 23 C -0.059 4.059 24 O -0.237 6.237 25 C -0.133 4.133 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.238 0.762 41 H 0.157 0.843 42 H 0.168 0.832 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.170 0.830 46 H 0.130 0.870 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.158 2.159 -0.352 2.475 hybrid contribution 0.860 0.230 0.124 0.899 sum 2.018 2.389 -0.228 3.135 Atomic orbital electron populations 1.26274 1.21519 1.04490 1.04532 0.77199 0.65271 0.64657 0.61662 1.26270 1.06358 1.19395 1.04831 1.26263 1.06357 1.08510 1.15688 1.28042 1.03067 0.99575 1.11057 1.21308 0.97143 0.95134 0.98013 1.21466 1.00229 1.00118 0.92757 1.18661 0.99998 0.93702 0.92427 1.18367 0.93567 0.97074 0.96409 1.20988 0.99799 0.92749 0.95888 1.20051 0.96030 0.98665 0.96384 1.24924 1.06114 0.85396 1.01597 1.86495 1.33278 1.53966 1.61711 0.85298 0.79407 0.79698 0.75478 1.18515 1.19233 1.17842 1.20521 0.97386 0.94754 1.02021 1.18791 0.91294 0.95793 0.94185 1.18969 0.94907 0.89412 0.95488 1.86354 1.59170 1.36806 1.40258 1.23969 0.93120 0.94945 0.94160 1.23956 0.91989 0.90222 0.99778 1.86308 1.35867 1.60599 1.40908 1.21291 0.99537 0.93454 0.99054 1.21275 0.97399 1.00515 0.92515 0.91469 0.90633 0.91358 0.91370 0.90595 0.91000 0.90866 0.90607 0.91368 0.84159 0.85589 0.83630 0.85081 0.76165 0.84330 0.83226 0.90052 0.90213 0.82962 0.86951 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.28 8.65 113.37 0.98 2.27 16 2 Si 1.12 -5.26 12.31 68.60 0.84 -4.41 16 3 C -0.46 1.59 8.52 113.37 0.97 2.56 16 4 C -0.46 1.64 8.52 113.37 0.97 2.61 16 5 C -0.38 -0.44 4.60 22.31 0.10 -0.34 16 6 C -0.10 -0.24 9.28 22.24 0.21 -0.04 16 7 C -0.13 -0.67 9.52 22.49 0.21 -0.46 16 8 C -0.05 -0.36 5.25 -20.05 -0.11 -0.46 16 9 C -0.05 -0.40 5.48 -19.95 -0.11 -0.51 16 10 C -0.08 -0.37 9.14 22.48 0.21 -0.16 16 11 C -0.11 -0.37 5.34 -19.91 -0.11 -0.47 16 12 C -0.07 0.00 2.79 71.24 0.20 0.20 16 13 O -0.55 -0.34 12.83 -148.98 -1.91 -2.25 16 14 Si 0.98 0.21 25.13 68.60 1.72 1.93 16 15 H -0.26 -0.55 7.11 99.48 0.71 0.16 16 16 H -0.27 -0.72 7.11 99.48 0.71 -0.01 16 17 H -0.25 -0.17 7.04 99.48 0.70 0.53 16 18 C -0.13 -0.68 8.58 22.41 0.19 -0.49 16 19 C 0.04 0.33 6.49 22.53 0.15 0.48 16 20 C 0.06 0.46 6.41 22.78 0.15 0.61 16 21 O -0.31 -1.93 8.70 -81.57 -0.71 -2.64 16 22 C 0.01 -0.02 7.26 72.14 0.52 0.50 16 23 C 0.02 -0.03 7.26 72.14 0.52 0.50 16 24 O -0.32 -1.85 10.42 -82.76 -0.86 -2.72 16 25 C -0.12 -0.75 8.76 22.49 0.20 -0.56 16 26 C -0.10 -0.31 9.28 22.24 0.21 -0.11 16 27 H 0.07 -0.14 7.96 -2.39 -0.02 -0.15 16 28 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 29 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 30 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 31 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.07 -0.27 7.67 -2.39 -0.02 -0.29 16 33 H 0.07 -0.29 7.67 -2.39 -0.02 -0.31 16 34 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 35 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 36 H 0.14 -0.31 7.40 -2.91 -0.02 -0.33 16 37 H 0.13 0.39 8.05 -2.91 -0.02 0.36 16 38 H 0.15 0.41 8.04 -2.91 -0.02 0.39 16 39 H 0.13 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.39 -2.11 8.70 -74.05 -0.64 -2.76 16 41 H 0.14 0.44 4.83 -2.91 -0.01 0.43 16 42 H 0.15 -1.12 8.14 -2.39 -0.02 -1.14 16 43 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.15 -1.23 8.14 -2.39 -0.02 -1.25 16 46 H 0.11 0.71 7.68 -2.91 -0.02 0.69 16 47 H 0.14 -0.17 7.40 -2.91 -0.02 -0.19 16 Total: 0.00 -15.66 385.50 5.62 -10.04 By element: Atomic # 1 Polarization: -7.15 SS G_CDS: 1.08 Total: -6.08 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.46 Total: 6.12 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -3.48 Total: -7.61 kcal Atomic # 14 Polarization: -5.05 SS G_CDS: 2.57 Total: -2.48 kcal Total: -15.66 5.62 -10.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.114 kcal (2) G-P(sol) polarization free energy of solvation -15.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds