Wall clock time and date at job start Mon Mar 8 2021 09:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42895 * 109.46829 * 2 1 4 4 C 1.36002 * 116.99844 * 180.02562 * 3 2 1 5 5 C 1.38572 * 120.01376 * 0.02562 * 4 3 2 6 6 C 1.38382 * 120.24684 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.86198 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47131 * 119.99697 * 7 6 5 9 9 Si 1.86305 * 109.47185 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47126 * 179.97438 * 9 7 6 11 11 H 1.48496 * 109.46885 * 299.99843 * 9 7 6 12 12 H 1.48499 * 109.46850 * 59.99646 * 9 7 6 13 13 C 1.37969 * 120.27498 * 0.25298 * 6 5 4 14 14 C 1.39406 * 120.02726 * 359.49101 * 13 6 5 15 15 C 1.48339 * 120.12607 * 180.25170 * 14 13 6 16 16 C 1.39355 * 120.12097 * 129.97309 * 15 14 13 17 17 C 1.38012 * 119.87502 * 179.77111 * 16 15 14 18 18 C 1.38322 * 120.12171 * 0.51244 * 17 16 15 19 19 Si 1.86806 * 119.87660 * 179.76700 * 18 17 16 20 20 C 1.86299 * 109.46869 * 269.97521 * 19 18 17 21 21 C 1.86299 * 109.46870 * 29.97847 * 19 18 17 22 22 C 1.86300 * 109.47021 * 149.97652 * 19 18 17 23 23 C 1.38330 * 120.25043 * 359.74142 * 18 17 16 24 24 C 1.38007 * 120.12105 * 359.97438 * 23 18 17 25 25 C 1.39036 * 120.01541 * 180.02562 * 4 3 2 26 26 O 1.35942 * 120.13496 * 359.96418 * 25 4 3 27 27 C 1.42894 * 117.00650 * 89.99626 * 26 25 4 28 28 F 1.39906 * 109.46999 * 300.00064 * 27 26 25 29 29 F 1.39903 * 109.47325 * 59.99549 * 27 26 25 30 30 H 1.08995 * 109.46739 * 299.99596 * 1 2 3 31 31 H 1.08994 * 109.47350 * 60.00330 * 1 2 3 32 32 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46663 * 239.99921 * 2 1 3 34 34 H 1.09000 * 109.46766 * 120.00022 * 2 1 3 35 35 H 1.07999 * 119.87583 * 0.03901 * 5 4 3 36 36 H 1.08999 * 109.47358 * 240.00057 * 7 6 5 37 37 H 0.96700 * 114.00311 * 300.00591 * 8 7 6 38 38 H 1.08003 * 119.98364 * 179.72388 * 13 6 5 39 39 H 1.07998 * 120.06522 * 0.02967 * 16 15 14 40 40 H 1.08004 * 119.94073 * 180.28308 * 17 16 15 41 41 H 1.09001 * 109.46628 * 60.00274 * 20 19 18 42 42 H 1.09006 * 109.46830 * 179.97438 * 20 19 18 43 43 H 1.08993 * 109.47194 * 300.00293 * 20 19 18 44 44 H 1.08994 * 109.47497 * 59.99931 * 21 19 18 45 45 H 1.09000 * 109.46780 * 180.02562 * 21 19 18 46 46 H 1.09003 * 109.47178 * 299.99772 * 21 19 18 47 47 H 1.09003 * 109.47219 * 60.00216 * 22 19 18 48 48 H 1.08999 * 109.47175 * 179.97438 * 22 19 18 49 49 H 1.08994 * 109.47088 * 299.99911 * 22 19 18 50 50 H 1.07994 * 119.93824 * 179.97438 * 23 18 17 51 51 H 1.07997 * 120.06243 * 180.02562 * 24 23 18 52 52 H 1.08996 * 109.47601 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.1990 0.4268 -0.0016 6 6 5.5716 0.6025 -0.0016 7 6 6.4819 -0.5985 -0.0022 8 8 7.3064 -0.5707 -1.1691 9 14 5.4572 -2.1544 -0.0036 10 1 6.3541 -3.3378 -0.0047 11 1 4.6000 -2.1835 1.2087 12 1 4.6006 -2.1818 -1.2163 13 6 6.1102 1.8727 0.0047 14 6 5.2714 2.9862 0.0004 15 6 5.8482 4.3529 0.0015 16 6 5.4103 5.2974 -0.9248 17 6 5.9470 6.5689 -0.9162 18 6 6.9253 6.9032 0.0028 19 14 7.6517 8.6242 0.0041 20 6 9.1331 8.6739 -1.1245 21 6 6.3726 9.8385 -0.5961 22 6 8.1737 9.0766 1.7343 23 6 7.3675 5.9680 0.9211 24 6 6.8337 4.6953 0.9254 25 6 3.8864 2.8101 0.0000 26 8 3.0611 3.8904 0.0003 27 6 2.6669 4.4055 1.2735 28 9 1.9873 3.4130 1.9880 29 9 3.8027 4.8000 1.9889 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7843 -0.5704 -0.0026 36 1 7.1109 -0.5781 0.8877 37 1 6.8124 -0.5867 -2.0002 38 1 7.1822 2.0044 0.0091 39 1 4.6495 5.0363 -1.6454 40 1 5.6052 7.3032 -1.6307 41 1 8.8276 8.4092 -2.1368 42 1 9.5567 9.6783 -1.1240 43 1 9.8813 7.9634 -0.7733 44 1 5.5059 9.8094 0.0642 45 1 6.7966 10.8426 -0.5957 46 1 6.0672 9.5738 -1.6084 47 1 8.9221 8.3661 2.0855 48 1 8.5980 10.0806 1.7351 49 1 7.3070 9.0475 2.3946 50 1 8.1319 6.2343 1.6361 51 1 7.1793 3.9661 1.6431 52 1 2.0113 5.2645 1.1309 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:06:09 Heat of formation + Delta-G solvation = -212.454691 kcal Electronic energy + Delta-G solvation = -36497.191648 eV Core-core repulsion = 31606.963256 eV Total energy + Delta-G solvation = -4890.228393 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 396.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.89735 -48.01408 -41.83978 -40.00542 -39.00894 -38.97978 -37.04435 -33.60285 -32.97914 -31.82177 -30.89195 -29.99013 -29.35045 -28.41213 -28.37808 -27.61584 -25.89577 -25.25390 -23.55757 -23.43930 -22.62757 -21.49291 -20.00481 -19.19771 -19.00895 -18.69631 -17.83728 -17.46721 -17.29667 -17.20951 -16.82529 -16.26543 -16.20421 -15.76961 -15.71198 -15.26927 -14.94827 -14.72950 -14.60300 -14.55074 -14.38119 -14.27341 -14.15722 -14.05257 -13.97740 -13.82521 -13.80401 -13.65838 -13.57596 -13.45224 -13.24523 -13.22714 -13.09524 -13.07047 -12.92295 -12.77184 -12.65360 -12.34947 -12.24259 -11.95725 -11.88787 -11.79738 -11.68819 -11.02686 -10.87114 -10.78241 -10.55960 -10.19073 -9.68730 -9.32791 -9.16313 -0.38695 0.09381 0.59741 0.66780 1.01300 1.30470 1.38256 1.76080 1.79103 1.86735 1.88843 1.97899 2.03200 2.55762 2.58737 2.74411 3.05056 3.30858 3.40890 3.50555 3.63632 3.79517 3.85545 3.88195 3.94252 4.06990 4.15201 4.17285 4.18585 4.23560 4.30151 4.51019 4.58604 4.63539 4.70636 4.73593 4.74664 4.77052 4.77951 4.78518 4.79282 4.80084 4.85836 5.02721 5.05573 5.11497 5.23314 5.29754 5.36267 5.46280 5.53966 5.56050 5.57261 5.71066 5.72346 5.82698 6.20841 6.32988 6.44309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.297 6.297 4 C 0.145 3.855 5 C -0.212 4.212 6 C -0.069 4.069 7 C -0.081 4.081 8 O -0.534 6.534 9 Si 0.942 3.058 10 H -0.248 1.248 11 H -0.249 1.249 12 H -0.249 1.249 13 C -0.109 4.109 14 C -0.002 4.002 15 C -0.042 4.042 16 C -0.100 4.100 17 C -0.091 4.091 18 C -0.363 4.363 19 Si 1.058 2.942 20 C -0.449 4.449 21 C -0.449 4.449 22 C -0.449 4.449 23 C -0.089 4.089 24 C -0.105 4.105 25 C 0.048 3.952 26 O -0.314 6.314 27 C 0.404 3.596 28 F -0.200 7.200 29 F -0.199 7.199 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.378 0.622 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.122 0.878 51 H 0.120 0.880 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -0.024 -0.537 1.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.209 6.209 4 C 0.098 3.902 5 C -0.230 4.230 6 C -0.070 4.070 7 C -0.191 4.191 8 O -0.339 6.339 9 Si 0.764 3.236 10 H -0.172 1.172 11 H -0.173 1.173 12 H -0.173 1.173 13 C -0.127 4.127 14 C -0.003 4.003 15 C -0.042 4.042 16 C -0.118 4.118 17 C -0.109 4.109 18 C -0.405 4.405 19 Si 1.250 2.750 20 C -0.556 4.556 21 C -0.557 4.557 22 C -0.557 4.557 23 C -0.107 4.107 24 C -0.123 4.123 25 C 0.004 3.996 26 O -0.233 6.233 27 C 0.314 3.686 28 F -0.182 7.182 29 F -0.181 7.181 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.225 0.775 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.140 0.860 51 H 0.138 0.862 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.157 -0.619 -0.202 1.328 hybrid contribution -0.255 -0.188 -0.039 0.319 sum -1.413 -0.806 -0.241 1.644 Atomic orbital electron populations 1.21771 0.91960 1.03189 1.03927 1.22944 0.96673 0.81562 1.01495 1.86207 1.17497 1.29582 1.87660 1.18990 0.83359 0.92606 0.95209 1.21053 0.93648 0.97975 1.10358 1.20118 0.92897 0.96027 0.97928 1.25002 0.98997 1.02698 0.92443 1.86537 1.35109 1.97012 1.15208 0.85790 0.78820 0.77120 0.81840 1.17163 1.17280 1.17300 1.20905 1.00286 0.89731 1.01759 1.18939 0.90534 0.93713 0.97091 1.18512 0.97127 0.91392 0.97193 1.21284 0.99238 0.93127 0.98161 1.20993 0.96050 0.95689 0.98134 1.27420 1.01420 1.14332 0.97298 0.78200 0.66608 0.62891 0.67326 1.26122 1.14621 1.04400 1.10485 1.26130 1.12169 1.11222 1.06152 1.26135 1.05787 1.05437 1.18351 1.20967 0.98855 0.92851 0.98036 1.21213 0.95973 0.97086 0.97998 1.17717 0.87968 0.83564 1.10342 1.86706 1.64578 1.44538 1.27447 1.23544 0.81155 0.87791 0.76063 1.93098 1.79984 1.65574 1.79540 1.93113 1.54605 1.90852 1.79505 0.91195 0.91222 0.90057 0.91821 0.91829 0.85012 0.85823 0.77488 0.84151 0.85941 0.86019 0.91168 0.91104 0.91160 0.91071 0.91017 0.91168 0.91180 0.91023 0.91060 0.86017 0.86248 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.17 10.28 37.16 0.38 0.55 16 2 C 0.05 0.01 5.46 37.16 0.20 0.21 16 3 O -0.30 -0.91 9.37 -34.32 -0.32 -1.24 16 4 C 0.15 0.46 6.44 -39.16 -0.25 0.21 16 5 C -0.21 -0.33 7.66 -39.41 -0.30 -0.63 16 6 C -0.07 -0.07 5.38 -104.67 -0.56 -0.63 16 7 C -0.08 0.04 2.82 36.00 0.10 0.15 16 8 O -0.53 0.01 12.77 -35.23 -0.45 -0.44 16 9 Si 0.94 -0.72 25.06 -169.99 -4.26 -4.98 16 10 H -0.25 -0.12 7.11 56.52 0.40 0.29 16 11 H -0.25 0.09 7.11 56.52 0.40 0.49 16 12 H -0.25 0.20 7.11 56.52 0.40 0.61 16 13 C -0.11 -0.18 9.06 -39.25 -0.36 -0.54 16 14 C 0.00 -0.01 5.34 -104.79 -0.56 -0.57 16 15 C -0.04 -0.11 3.96 -104.91 -0.42 -0.53 16 16 C -0.10 -0.22 8.78 -39.25 -0.34 -0.57 16 17 C -0.09 -0.09 9.28 -39.63 -0.37 -0.45 16 18 C -0.36 -0.12 4.60 -39.52 -0.18 -0.30 16 19 Si 1.06 -2.25 12.31 -169.99 -2.09 -4.34 16 20 C -0.45 0.52 8.65 101.05 0.87 1.39 16 21 C -0.45 0.69 8.52 101.05 0.86 1.55 16 22 C -0.45 0.63 8.52 101.05 0.86 1.49 16 23 C -0.09 -0.09 9.28 -39.63 -0.37 -0.45 16 24 C -0.10 -0.21 9.51 -39.25 -0.37 -0.58 16 25 C 0.05 0.17 5.25 -38.77 -0.20 -0.03 16 26 O -0.31 -0.99 8.50 -34.13 -0.29 -1.28 16 27 C 0.40 0.70 6.35 101.05 0.64 1.34 16 28 F -0.20 -0.72 16.46 2.25 0.04 -0.68 16 29 F -0.20 -0.65 15.77 2.25 0.04 -0.62 16 30 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 33 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 34 H 0.06 -0.04 7.66 -51.93 -0.40 -0.44 16 35 H 0.13 0.01 3.08 -52.49 -0.16 -0.16 16 36 H 0.12 -0.19 7.96 -51.93 -0.41 -0.61 16 37 H 0.38 -1.16 8.70 45.56 0.40 -0.76 16 38 H 0.14 0.12 8.04 -52.48 -0.42 -0.30 16 39 H 0.12 0.24 7.70 -52.49 -0.40 -0.16 16 40 H 0.12 -0.12 7.40 -52.48 -0.39 -0.51 16 41 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 42 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 43 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 44 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 45 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 46 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 47 H 0.07 -0.11 7.67 -51.93 -0.40 -0.51 16 48 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 49 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 50 H 0.12 -0.11 7.40 -52.49 -0.39 -0.50 16 51 H 0.12 0.12 8.04 -52.49 -0.42 -0.30 16 52 H 0.17 -0.41 8.14 -51.93 -0.42 -0.84 16 LS Contribution 433.98 15.07 6.54 6.54 Total: 0.00 -6.87 433.98 -8.34 -15.21 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: -7.18 Total: -9.78 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.36 Total: 1.61 kcal Atomic # 8 Polarization: -1.89 SS G_CDS: -1.06 Total: -2.95 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.07 Total: -1.30 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: -6.35 Total: -9.32 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -6.87 -8.34 -15.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.246 kcal (2) G-P(sol) polarization free energy of solvation -6.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds