Wall clock time and date at job start Mon Mar 8 2021 09:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42895 * 109.46829 * 2 1 4 4 C 1.36002 * 116.99844 * 180.02562 * 3 2 1 5 5 C 1.38572 * 120.01376 * 0.02562 * 4 3 2 6 6 C 1.38382 * 120.24684 * 180.02562 * 5 4 3 7 7 C 1.50696 * 119.86198 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.47131 * 119.99697 * 7 6 5 9 9 Si 1.86305 * 109.47185 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47126 * 179.97438 * 9 7 6 11 11 H 1.48496 * 109.46885 * 299.99843 * 9 7 6 12 12 H 1.48499 * 109.46850 * 59.99646 * 9 7 6 13 13 C 1.37969 * 120.27498 * 0.25298 * 6 5 4 14 14 C 1.39406 * 120.02726 * 359.49101 * 13 6 5 15 15 C 1.48339 * 120.12607 * 180.25170 * 14 13 6 16 16 C 1.39355 * 120.12097 * 129.97309 * 15 14 13 17 17 C 1.38012 * 119.87502 * 179.77111 * 16 15 14 18 18 C 1.38322 * 120.12171 * 0.51244 * 17 16 15 19 19 Si 1.86806 * 119.87660 * 179.76700 * 18 17 16 20 20 C 1.86299 * 109.46869 * 269.97521 * 19 18 17 21 21 C 1.86299 * 109.46870 * 29.97847 * 19 18 17 22 22 C 1.86300 * 109.47021 * 149.97652 * 19 18 17 23 23 C 1.38330 * 120.25043 * 359.74142 * 18 17 16 24 24 C 1.38007 * 120.12105 * 359.97438 * 23 18 17 25 25 C 1.39036 * 120.01541 * 180.02562 * 4 3 2 26 26 O 1.35942 * 120.13496 * 359.96418 * 25 4 3 27 27 C 1.42894 * 117.00650 * 89.99626 * 26 25 4 28 28 F 1.39906 * 109.46999 * 300.00064 * 27 26 25 29 29 F 1.39903 * 109.47325 * 59.99549 * 27 26 25 30 30 H 1.08995 * 109.46739 * 299.99596 * 1 2 3 31 31 H 1.08994 * 109.47350 * 60.00330 * 1 2 3 32 32 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46663 * 239.99921 * 2 1 3 34 34 H 1.09000 * 109.46766 * 120.00022 * 2 1 3 35 35 H 1.07999 * 119.87583 * 0.03901 * 5 4 3 36 36 H 1.08999 * 109.47358 * 240.00057 * 7 6 5 37 37 H 0.96700 * 114.00311 * 300.00591 * 8 7 6 38 38 H 1.08003 * 119.98364 * 179.72388 * 13 6 5 39 39 H 1.07998 * 120.06522 * 0.02967 * 16 15 14 40 40 H 1.08004 * 119.94073 * 180.28308 * 17 16 15 41 41 H 1.09001 * 109.46628 * 60.00274 * 20 19 18 42 42 H 1.09006 * 109.46830 * 179.97438 * 20 19 18 43 43 H 1.08993 * 109.47194 * 300.00293 * 20 19 18 44 44 H 1.08994 * 109.47497 * 59.99931 * 21 19 18 45 45 H 1.09000 * 109.46780 * 180.02562 * 21 19 18 46 46 H 1.09003 * 109.47178 * 299.99772 * 21 19 18 47 47 H 1.09003 * 109.47219 * 60.00216 * 22 19 18 48 48 H 1.08999 * 109.47175 * 179.97438 * 22 19 18 49 49 H 1.08994 * 109.47088 * 299.99911 * 22 19 18 50 50 H 1.07994 * 119.93824 * 179.97438 * 23 18 17 51 51 H 1.07997 * 120.06243 * 180.02562 * 24 23 18 52 52 H 1.08996 * 109.47601 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.1990 0.4268 -0.0016 6 6 5.5716 0.6025 -0.0016 7 6 6.4819 -0.5985 -0.0022 8 8 7.3064 -0.5707 -1.1691 9 14 5.4572 -2.1544 -0.0036 10 1 6.3541 -3.3378 -0.0047 11 1 4.6000 -2.1835 1.2087 12 1 4.6006 -2.1818 -1.2163 13 6 6.1102 1.8727 0.0047 14 6 5.2714 2.9862 0.0004 15 6 5.8482 4.3529 0.0015 16 6 5.4103 5.2974 -0.9248 17 6 5.9470 6.5689 -0.9162 18 6 6.9253 6.9032 0.0028 19 14 7.6517 8.6242 0.0041 20 6 9.1331 8.6739 -1.1245 21 6 6.3726 9.8385 -0.5961 22 6 8.1737 9.0766 1.7343 23 6 7.3675 5.9680 0.9211 24 6 6.8337 4.6953 0.9254 25 6 3.8864 2.8101 0.0000 26 8 3.0611 3.8904 0.0003 27 6 2.6669 4.4055 1.2735 28 9 1.9873 3.4130 1.9880 29 9 3.8027 4.8000 1.9889 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7843 -0.5704 -0.0026 36 1 7.1109 -0.5781 0.8877 37 1 6.8124 -0.5867 -2.0002 38 1 7.1822 2.0044 0.0091 39 1 4.6495 5.0363 -1.6454 40 1 5.6052 7.3032 -1.6307 41 1 8.8276 8.4092 -2.1368 42 1 9.5567 9.6783 -1.1240 43 1 9.8813 7.9634 -0.7733 44 1 5.5059 9.8094 0.0642 45 1 6.7966 10.8426 -0.5957 46 1 6.0672 9.5738 -1.6084 47 1 8.9221 8.3661 2.0855 48 1 8.5980 10.0806 1.7351 49 1 7.3070 9.0475 2.3946 50 1 8.1319 6.2343 1.6361 51 1 7.1793 3.9661 1.6431 52 1 2.0113 5.2645 1.1309 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:06:07 Heat of formation + Delta-G solvation = -203.195939 kcal Electronic energy + Delta-G solvation = -36496.790159 eV Core-core repulsion = 31606.963256 eV Total energy + Delta-G solvation = -4889.826903 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 396.153 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.08238 -48.21367 -41.95156 -40.08761 -39.09765 -39.05559 -37.08059 -33.67258 -32.98262 -31.88376 -30.95937 -30.03331 -29.26310 -28.27163 -28.24605 -27.68882 -25.96275 -25.30580 -23.61198 -23.48562 -22.71896 -21.57448 -20.13950 -19.29131 -19.10140 -18.86376 -17.89369 -17.51852 -17.38136 -17.27490 -16.94152 -16.27594 -16.20906 -15.82076 -15.78676 -15.34211 -15.09368 -14.84179 -14.70688 -14.58734 -14.56928 -14.30612 -14.06759 -14.02806 -13.98153 -13.85774 -13.70763 -13.63885 -13.55813 -13.44491 -13.18904 -13.14295 -13.08863 -12.95467 -12.93410 -12.82266 -12.62542 -12.35679 -12.24800 -11.98809 -11.90248 -11.82123 -11.73155 -10.94229 -10.76520 -10.73255 -10.54525 -10.25473 -9.77499 -9.45303 -9.25775 -0.50040 -0.03134 0.51580 0.58029 1.06102 1.36592 1.42746 1.78189 1.83054 1.86966 1.94768 2.05521 2.12540 2.45447 2.63437 2.69475 2.98441 3.31591 3.33981 3.51648 3.62270 3.67816 3.79998 3.90751 3.94999 3.99111 4.05062 4.11242 4.17130 4.22185 4.25062 4.54384 4.56789 4.65872 4.69777 4.77308 4.83614 4.86960 4.87023 4.90213 4.91251 4.92130 4.92830 4.94970 5.01182 5.13714 5.15905 5.22152 5.27942 5.45976 5.59987 5.61375 5.63884 5.70018 5.71675 5.73575 6.15611 6.22108 6.61681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.038 3.962 3 O -0.314 6.314 4 C 0.131 3.869 5 C -0.214 4.214 6 C -0.065 4.065 7 C -0.079 4.079 8 O -0.546 6.546 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.254 1.254 12 H -0.246 1.246 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.054 4.054 16 C -0.113 4.113 17 C -0.098 4.098 18 C -0.373 4.373 19 Si 1.125 2.875 20 C -0.462 4.462 21 C -0.461 4.461 22 C -0.462 4.462 23 C -0.098 4.098 24 C -0.119 4.119 25 C 0.028 3.972 26 O -0.321 6.321 27 C 0.396 3.604 28 F -0.213 7.213 29 F -0.210 7.210 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.390 0.610 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.140 0.860 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.139 0.861 51 H 0.122 0.878 52 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 0.276 -0.638 0.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.036 4.036 3 O -0.227 6.227 4 C 0.084 3.916 5 C -0.232 4.232 6 C -0.065 4.065 7 C -0.190 4.190 8 O -0.353 6.353 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.178 1.178 12 H -0.170 1.170 13 C -0.132 4.132 14 C -0.012 4.012 15 C -0.054 4.054 16 C -0.132 4.132 17 C -0.115 4.115 18 C -0.412 4.412 19 Si 1.313 2.687 20 C -0.569 4.569 21 C -0.568 4.568 22 C -0.569 4.569 23 C -0.116 4.116 24 C -0.137 4.137 25 C -0.015 4.015 26 O -0.240 6.240 27 C 0.308 3.692 28 F -0.195 7.195 29 F -0.192 7.192 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.239 0.761 38 H 0.164 0.836 39 H 0.135 0.865 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.157 0.843 51 H 0.140 0.860 52 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.924 -0.333 -0.316 1.031 hybrid contribution -0.319 -0.290 -0.016 0.432 sum -1.243 -0.623 -0.332 1.429 Atomic orbital electron populations 1.21793 0.91114 1.04304 1.03349 1.23202 0.97425 0.80668 1.02343 1.86186 1.17522 1.31235 1.87763 1.19177 0.83731 0.92963 0.95709 1.21221 0.93757 0.98210 1.10011 1.20292 0.92960 0.96322 0.96935 1.25089 0.99001 1.02067 0.92800 1.86509 1.35839 1.96950 1.15984 0.85420 0.78047 0.75788 0.81622 1.18937 1.17769 1.16967 1.21028 1.00475 0.89869 1.01794 1.19094 0.90558 0.94275 0.97226 1.18610 0.97610 0.91498 0.97711 1.21367 0.99604 0.93836 0.98346 1.21282 0.96061 0.95561 0.98631 1.28046 1.00930 1.15743 0.96517 0.77199 0.65070 0.60440 0.66041 1.26280 1.15267 1.04594 1.10715 1.26258 1.12436 1.11731 1.06377 1.26277 1.05845 1.05812 1.18968 1.21279 0.99162 0.92581 0.98543 1.21380 0.96253 0.97858 0.98198 1.17942 0.88384 0.83956 1.11246 1.86678 1.64588 1.44574 1.28151 1.24226 0.81210 0.88438 0.75366 1.93065 1.80161 1.66411 1.79887 1.93084 1.55439 1.90872 1.79800 0.91946 0.91589 0.88065 0.90688 0.91199 0.83692 0.84883 0.76075 0.83648 0.86462 0.84263 0.91415 0.90669 0.91415 0.91254 0.90648 0.90900 0.90967 0.90643 0.91370 0.84284 0.85966 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.31 10.28 71.98 0.74 1.05 16 2 C 0.04 0.03 5.46 71.98 0.39 0.42 16 3 O -0.31 -2.28 9.37 -79.64 -0.75 -3.03 16 4 C 0.13 1.00 6.44 22.54 0.15 1.14 16 5 C -0.21 -0.78 7.66 22.38 0.17 -0.61 16 6 C -0.06 -0.16 5.38 -19.90 -0.11 -0.26 16 7 C -0.08 0.09 2.82 71.23 0.20 0.29 16 8 O -0.55 0.08 12.77 -148.98 -1.90 -1.83 16 9 Si 0.97 -1.75 25.06 68.60 1.72 -0.03 16 10 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 11 H -0.25 0.26 7.11 99.48 0.71 0.97 16 12 H -0.25 0.59 7.11 99.48 0.71 1.29 16 13 C -0.11 -0.51 9.06 22.49 0.20 -0.31 16 14 C -0.01 -0.08 5.34 -19.97 -0.11 -0.19 16 15 C -0.05 -0.37 3.96 -20.05 -0.08 -0.44 16 16 C -0.11 -0.64 8.78 22.49 0.20 -0.45 16 17 C -0.10 -0.22 9.28 22.24 0.21 -0.01 16 18 C -0.37 -0.22 4.60 22.31 0.10 -0.12 16 19 Si 1.13 -5.59 12.31 68.60 0.84 -4.75 16 20 C -0.46 1.36 8.65 113.37 0.98 2.34 16 21 C -0.46 1.80 8.52 113.37 0.97 2.76 16 22 C -0.46 1.65 8.52 113.37 0.97 2.61 16 23 C -0.10 -0.22 9.28 22.24 0.21 -0.01 16 24 C -0.12 -0.60 9.51 22.49 0.21 -0.39 16 25 C 0.03 0.25 5.25 22.80 0.12 0.37 16 26 O -0.32 -2.49 8.50 -78.96 -0.67 -3.16 16 27 C 0.40 1.74 6.35 113.37 0.72 2.47 16 28 F -0.21 -1.80 16.46 44.97 0.74 -1.06 16 29 F -0.21 -1.64 15.77 44.97 0.71 -0.93 16 30 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.07 -0.15 7.66 -2.39 -0.02 -0.17 16 34 H 0.07 -0.07 7.66 -2.39 -0.02 -0.09 16 35 H 0.15 0.01 3.08 -2.91 -0.01 0.00 16 36 H 0.13 -0.44 7.96 -2.39 -0.02 -0.45 16 37 H 0.39 -2.43 8.70 -74.06 -0.64 -3.07 16 38 H 0.15 0.41 8.04 -2.91 -0.02 0.38 16 39 H 0.12 0.68 7.70 -2.91 -0.02 0.66 16 40 H 0.14 -0.31 7.40 -2.91 -0.02 -0.33 16 41 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 42 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 45 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 46 H 0.07 -0.31 7.67 -2.39 -0.02 -0.33 16 47 H 0.07 -0.28 7.67 -2.39 -0.02 -0.30 16 48 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 49 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 50 H 0.14 -0.30 7.40 -2.91 -0.02 -0.32 16 51 H 0.12 0.41 8.04 -2.91 -0.02 0.39 16 52 H 0.21 -1.03 8.14 -2.39 -0.02 -1.05 16 Total: 0.00 -16.65 433.98 7.99 -8.66 By element: Atomic # 1 Polarization: -5.58 SS G_CDS: 1.05 Total: -4.53 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.24 Total: 10.66 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -3.32 Total: -8.02 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 1.45 Total: -1.99 kcal Atomic # 14 Polarization: -7.35 SS G_CDS: 2.56 Total: -4.78 kcal Total: -16.65 7.99 -8.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.531 kcal (2) G-P(sol) polarization free energy of solvation -16.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds