Wall clock time and date at job start Mon Mar 8 2021 09:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36002 * 116.99844 * 2 1 4 4 C 1.38572 * 120.01376 * 0.02562 * 3 2 1 5 5 C 1.38382 * 120.24684 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.86198 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.47131 * 119.99697 * 6 5 4 8 8 Si 1.86305 * 109.47185 * 0.02562 * 6 5 4 9 9 H 1.48499 * 109.47126 * 179.97438 * 8 6 5 10 10 H 1.48496 * 109.46885 * 299.99843 * 8 6 5 11 11 H 1.48499 * 109.46850 * 59.99646 * 8 6 5 12 12 C 1.37969 * 120.27498 * 0.25298 * 5 4 3 13 13 C 1.39406 * 120.02726 * 359.49101 * 12 5 4 14 14 C 1.48339 * 120.12607 * 180.25170 * 13 12 5 15 15 C 1.39355 * 120.12097 * 129.97309 * 14 13 12 16 16 C 1.38012 * 119.87502 * 179.77111 * 15 14 13 17 17 C 1.38322 * 120.12171 * 0.51244 * 16 15 14 18 18 Si 1.86806 * 119.87660 * 179.76700 * 17 16 15 19 19 C 1.86299 * 109.46869 * 269.97521 * 18 17 16 20 20 C 1.86299 * 109.46870 * 29.97847 * 18 17 16 21 21 C 1.86300 * 109.47021 * 149.97652 * 18 17 16 22 22 C 1.38330 * 120.25043 * 359.74142 * 17 16 15 23 23 C 1.38007 * 120.12105 * 359.97438 * 22 17 16 24 24 C 1.39036 * 120.01541 * 180.02562 * 3 2 1 25 25 O 1.35942 * 120.13496 * 359.96418 * 24 3 2 26 26 C 1.42894 * 117.00650 * 89.99626 * 25 24 3 27 27 F 1.39906 * 109.46999 * 300.00064 * 26 25 24 28 28 F 1.39903 * 109.47325 * 59.99549 * 26 25 24 29 29 H 1.09000 * 109.47464 * 60.00463 * 1 2 3 30 30 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47562 * 299.99586 * 1 2 3 32 32 H 1.07999 * 119.87583 * 0.03901 * 4 3 2 33 33 H 1.08999 * 109.47358 * 240.00057 * 6 5 4 34 34 H 0.96700 * 114.00311 * 300.00591 * 7 6 5 35 35 H 1.08003 * 119.98364 * 179.72388 * 12 5 4 36 36 H 1.07998 * 120.06522 * 0.02967 * 15 14 13 37 37 H 1.08004 * 119.94073 * 180.28308 * 16 15 14 38 38 H 1.09001 * 109.46628 * 60.00274 * 19 18 17 39 39 H 1.09006 * 109.46830 * 179.97438 * 19 18 17 40 40 H 1.08993 * 109.47194 * 300.00293 * 19 18 17 41 41 H 1.08994 * 109.47497 * 59.99931 * 20 18 17 42 42 H 1.09000 * 109.46780 * 180.02562 * 20 18 17 43 43 H 1.09003 * 109.47178 * 299.99772 * 20 18 17 44 44 H 1.09003 * 109.47219 * 60.00216 * 21 18 17 45 45 H 1.08999 * 109.47175 * 179.97438 * 21 18 17 46 46 H 1.08994 * 109.47088 * 299.99911 * 21 18 17 47 47 H 1.07994 * 119.93824 * 179.97438 * 22 17 16 48 48 H 1.07997 * 120.06243 * 180.02562 * 23 22 17 49 49 H 1.08996 * 109.47601 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3741 0.0005 5 6 1.9151 3.6097 0.0000 6 6 1.0861 4.8682 0.0000 7 8 1.3871 5.6368 1.1665 8 14 -0.7224 4.4206 0.0016 9 1 -1.5392 5.6607 0.0022 10 1 -1.0355 3.6216 -1.2103 11 1 -1.0337 3.6226 1.2147 12 6 3.2922 3.6941 -0.0063 13 6 4.0624 2.5322 -0.0015 14 6 5.5431 2.6205 -0.0027 15 6 6.2878 1.8933 0.9240 16 6 7.6654 1.9755 0.9153 17 6 8.3066 2.7861 -0.0040 18 14 10.1714 2.8973 -0.0054 19 6 10.7119 4.2780 1.1226 20 6 10.8899 1.2869 0.5955 21 6 10.7719 3.2379 -1.7358 22 6 7.5723 3.5142 -0.9227 23 6 6.1945 3.4351 -0.9269 24 6 3.4348 1.2850 -0.0005 25 8 4.1782 0.1468 -0.0003 26 6 4.5325 -0.3970 -1.2734 27 9 3.3703 -0.7073 -1.9877 28 9 5.2830 0.5420 -1.9891 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2135 2.3155 0.0016 33 1 1.3150 5.4540 -0.8902 34 1 1.2074 5.1767 1.9979 35 1 3.7736 4.6609 -0.0112 36 1 5.7880 1.2632 1.6449 37 1 8.2438 1.4088 1.6300 38 1 10.3606 4.0786 2.1349 39 1 11.8001 4.3426 1.1221 40 1 10.2914 5.2200 0.7710 41 1 10.5736 0.4792 -0.0644 42 1 11.9780 1.3520 0.5951 43 1 10.5386 1.0876 1.6079 44 1 10.3514 4.1802 -2.0874 45 1 11.8599 3.3033 -1.7366 46 1 10.4556 2.4302 -2.3957 47 1 8.0781 4.1458 -1.6379 48 1 5.6222 4.0037 -1.6449 49 1 5.1239 -1.3013 -1.1303 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:05 Heat of formation + Delta-G solvation = -198.491140 kcal Electronic energy + Delta-G solvation = -34301.525309 eV Core-core repulsion = 29567.440040 eV Total energy + Delta-G solvation = -4734.085268 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 382.137 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -50.07870 -48.21021 -41.93001 -40.02836 -39.08272 -38.98664 -37.05429 -33.62011 -31.94133 -31.63582 -30.04384 -29.26595 -28.53091 -28.27043 -28.24526 -27.61437 -25.78442 -24.37899 -23.53246 -22.71418 -21.68123 -20.15778 -19.25593 -19.08954 -18.85631 -17.89611 -17.53233 -17.41310 -17.08128 -16.78197 -16.25180 -16.15227 -15.81660 -15.79772 -15.34476 -15.18654 -14.93422 -14.60610 -14.58460 -14.52840 -14.28550 -14.03296 -13.99944 -13.93532 -13.70921 -13.66071 -13.53544 -13.28307 -13.19542 -13.09384 -13.08246 -12.94928 -12.93233 -12.83975 -12.35972 -12.26541 -12.19055 -11.96281 -11.91128 -11.76379 -10.94151 -10.76396 -10.73176 -10.54184 -10.25135 -9.77361 -9.45598 -9.25659 -0.49706 -0.03032 0.51796 0.58169 1.06793 1.37432 1.43400 1.78868 1.83834 1.87200 2.04212 2.05573 2.13364 2.45730 2.63977 2.69565 2.98675 3.32595 3.35320 3.52849 3.62978 3.68332 3.81004 4.00807 4.03228 4.11102 4.12514 4.18806 4.22590 4.29133 4.54669 4.57305 4.59441 4.67473 4.76058 4.87041 4.87096 4.90362 4.91330 4.92238 4.92921 4.95137 5.01601 5.14596 5.22205 5.27483 5.45881 5.59918 5.61431 5.63800 5.69854 5.70651 5.73621 6.15758 6.20673 6.62126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.212 4.212 5 C -0.065 4.065 6 C -0.080 4.080 7 O -0.546 6.546 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.253 1.253 11 H -0.246 1.246 12 C -0.113 4.113 13 C -0.012 4.012 14 C -0.054 4.054 15 C -0.114 4.114 16 C -0.098 4.098 17 C -0.373 4.373 18 Si 1.125 2.875 19 C -0.462 4.462 20 C -0.461 4.461 21 C -0.462 4.462 22 C -0.098 4.098 23 C -0.119 4.119 24 C 0.028 3.972 25 O -0.321 6.321 26 C 0.396 3.604 27 F -0.213 7.213 28 F -0.210 7.210 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.390 0.610 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.139 0.861 48 H 0.122 0.878 49 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -0.503 0.623 0.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.230 6.230 3 C 0.081 3.919 4 C -0.231 4.231 5 C -0.066 4.066 6 C -0.190 4.190 7 O -0.353 6.353 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.177 1.177 11 H -0.169 1.169 12 C -0.132 4.132 13 C -0.012 4.012 14 C -0.054 4.054 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.412 4.412 18 Si 1.312 2.688 19 C -0.569 4.569 20 C -0.568 4.568 21 C -0.569 4.569 22 C -0.116 4.116 23 C -0.137 4.137 24 C -0.016 4.016 25 O -0.240 6.240 26 C 0.308 3.692 27 F -0.195 7.195 28 F -0.192 7.192 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.151 0.849 34 H 0.239 0.761 35 H 0.163 0.837 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.157 0.843 48 H 0.140 0.860 49 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.404 -0.577 0.301 0.766 hybrid contribution -0.469 -0.228 0.022 0.522 sum -0.873 -0.805 0.323 1.231 Atomic orbital electron populations 1.23482 0.76316 1.06232 1.02344 1.86174 1.23390 1.25547 1.87851 1.19229 0.91128 0.85728 0.95796 1.21231 1.00602 0.91402 1.09836 1.20296 0.94538 0.94770 0.96973 1.25101 1.09009 0.92123 0.92783 1.86509 1.89662 1.43151 1.16002 0.85393 0.73873 0.79800 0.81618 1.19060 1.17735 1.16941 1.21031 0.92622 0.97742 1.01755 1.19095 0.93424 0.91427 0.97274 1.18611 0.90028 0.99090 0.97700 1.21369 0.94901 0.98543 0.98349 1.21283 0.93571 0.98053 0.98627 1.28043 1.18848 0.97833 0.96524 0.77205 0.59409 0.66126 0.66049 1.26280 1.06016 1.13848 1.10709 1.26257 1.07235 1.16920 1.06385 1.26277 1.06520 1.05137 1.18966 1.21278 0.93137 0.98603 0.98541 1.21382 0.95678 0.98447 0.98207 1.17953 0.86640 0.85765 1.11203 1.86678 1.69733 1.39429 1.28188 1.24238 0.79186 0.90476 0.75344 1.93065 1.53432 1.93139 1.79896 1.93084 1.76565 1.69777 1.79783 0.91746 0.85832 0.91261 0.83511 0.84924 0.76070 0.83683 0.86437 0.84258 0.91413 0.90672 0.91416 0.91247 0.90651 0.90896 0.90965 0.90646 0.91364 0.84287 0.85965 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.07 9.73 -79.64 -0.78 -2.84 16 3 C 0.13 0.92 6.44 22.54 0.15 1.06 16 4 C -0.21 -0.68 7.66 22.38 0.17 -0.51 16 5 C -0.07 -0.14 5.38 -19.90 -0.11 -0.25 16 6 C -0.08 0.11 2.82 71.23 0.20 0.31 16 7 O -0.55 0.14 12.77 -148.98 -1.90 -1.76 16 8 Si 0.97 -2.05 25.06 68.60 1.72 -0.33 16 9 H -0.27 -0.24 7.11 99.48 0.71 0.47 16 10 H -0.25 0.36 7.11 99.48 0.71 1.07 16 11 H -0.25 0.67 7.11 99.48 0.71 1.38 16 12 C -0.11 -0.49 9.06 22.49 0.20 -0.29 16 13 C -0.01 -0.08 5.34 -19.97 -0.11 -0.19 16 14 C -0.05 -0.36 3.96 -20.05 -0.08 -0.44 16 15 C -0.11 -0.63 8.78 22.49 0.20 -0.44 16 16 C -0.10 -0.21 9.28 22.24 0.21 0.00 16 17 C -0.37 -0.20 4.60 22.31 0.10 -0.10 16 18 Si 1.12 -5.63 12.31 68.60 0.84 -4.78 16 19 C -0.46 1.38 8.65 113.37 0.98 2.36 16 20 C -0.46 1.81 8.52 113.37 0.97 2.78 16 21 C -0.46 1.66 8.52 113.37 0.97 2.63 16 22 C -0.10 -0.21 9.28 22.24 0.21 0.00 16 23 C -0.12 -0.60 9.51 22.49 0.21 -0.38 16 24 C 0.03 0.24 5.25 22.80 0.12 0.36 16 25 O -0.32 -2.43 8.50 -78.96 -0.67 -3.10 16 26 C 0.40 1.65 6.35 113.37 0.72 2.37 16 27 F -0.21 -1.74 16.46 44.97 0.74 -1.00 16 28 F -0.21 -1.61 15.77 44.97 0.71 -0.90 16 29 H 0.06 -0.20 7.66 -2.39 -0.02 -0.21 16 30 H 0.12 -0.65 8.14 -2.38 -0.02 -0.67 16 31 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 32 H 0.15 -0.09 3.08 -2.91 -0.01 -0.10 16 33 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 34 H 0.39 -2.49 8.70 -74.06 -0.64 -3.13 16 35 H 0.15 0.39 8.04 -2.91 -0.02 0.37 16 36 H 0.12 0.66 7.70 -2.91 -0.02 0.64 16 37 H 0.14 -0.32 7.40 -2.91 -0.02 -0.34 16 38 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 39 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 40 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 41 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 42 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 43 H 0.07 -0.31 7.67 -2.39 -0.02 -0.33 16 44 H 0.07 -0.28 7.67 -2.39 -0.02 -0.30 16 45 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 46 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 47 H 0.14 -0.31 7.40 -2.91 -0.02 -0.33 16 48 H 0.12 0.40 8.04 -2.91 -0.02 0.38 16 49 H 0.21 -1.09 8.14 -2.39 -0.02 -1.11 16 Total: 0.00 -17.08 412.13 7.98 -9.10 By element: Atomic # 1 Polarization: -5.84 SS G_CDS: 1.09 Total: -4.75 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.22 Total: 10.36 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -3.35 Total: -7.70 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 1.45 Total: -1.89 kcal Atomic # 14 Polarization: -7.68 SS G_CDS: 2.56 Total: -5.11 kcal Total: -17.08 7.98 -9.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.390 kcal (2) G-P(sol) polarization free energy of solvation -17.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds