Wall clock time and date at job start Mon Mar 8 2021 09:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42891 * 109.46880 * 2 1 4 4 C 1.42905 * 113.99983 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47162 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47330 * 65.00568 * 5 4 3 7 7 C 1.35864 * 117.00214 * 180.02562 * 6 5 4 8 8 C 1.38819 * 119.93555 * 0.24188 * 7 6 5 9 9 C 1.37924 * 120.06527 * 180.26079 * 8 7 6 10 10 C 1.39366 * 119.93257 * 359.49417 * 9 8 7 11 11 C 1.48367 * 120.06169 * 180.23595 * 10 9 8 12 12 C 1.39352 * 120.11637 * 179.72957 * 11 10 9 13 13 C 1.38022 * 119.87097 * 179.74133 * 12 11 10 14 14 C 1.38323 * 120.12016 * 0.50579 * 13 12 11 15 15 Si 1.86805 * 119.87356 * 179.74172 * 14 13 12 16 16 C 1.86297 * 109.47230 * 270.02116 * 15 14 13 17 17 C 1.86294 * 109.47033 * 30.02799 * 15 14 13 18 18 C 1.86307 * 109.46827 * 150.02124 * 15 14 13 19 19 C 1.38324 * 120.25208 * 359.76871 * 14 13 12 20 20 C 1.38018 * 120.11998 * 359.97239 * 19 14 13 21 21 C 1.39391 * 119.87014 * 0.25485 * 10 9 8 22 22 C 1.37887 * 119.93552 * 359.97438 * 21 10 9 23 23 C 1.50704 * 119.96389 * 179.97438 * 22 21 10 24 24 O 1.42901 * 109.47083 * 105.00475 * 23 22 21 25 25 Si 1.86297 * 109.47289 * 345.00127 * 23 22 21 26 26 H 1.48491 * 109.47292 * 60.00261 * 25 23 22 27 27 H 1.48504 * 109.47040 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46843 * 299.99866 * 25 23 22 29 29 H 1.09001 * 109.46981 * 299.99258 * 1 2 3 30 30 H 1.08999 * 109.47411 * 59.99524 * 1 2 3 31 31 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46666 * 240.00051 * 2 1 3 33 33 H 1.08999 * 109.47411 * 120.00476 * 2 1 3 34 34 H 1.09002 * 109.46597 * 60.00394 * 4 3 2 35 35 H 1.08999 * 109.47458 * 300.00754 * 4 3 2 36 36 H 1.08999 * 109.47320 * 304.99706 * 5 4 3 37 37 H 1.09000 * 109.46758 * 185.00371 * 5 4 3 38 38 H 1.07998 * 119.96428 * 0.03012 * 8 7 6 39 39 H 1.08002 * 120.03543 * 179.77658 * 9 8 7 40 40 H 1.07998 * 120.06450 * 359.97438 * 12 11 10 41 41 H 1.07998 * 119.94189 * 180.22715 * 13 12 11 42 42 H 1.09001 * 109.47152 * 60.00238 * 16 15 14 43 43 H 1.09006 * 109.47210 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.47391 * 300.00264 * 16 15 14 45 45 H 1.08997 * 109.47554 * 59.99581 * 17 15 14 46 46 H 1.09002 * 109.47379 * 180.02562 * 17 15 14 47 47 H 1.09001 * 109.46788 * 299.99419 * 17 15 14 48 48 H 1.08998 * 109.46926 * 60.00267 * 18 15 14 49 49 H 1.08998 * 109.47117 * 179.97438 * 18 15 14 50 50 H 1.08997 * 109.47262 * 300.00114 * 18 15 14 51 51 H 1.08000 * 119.94039 * 179.97438 * 19 14 13 52 52 H 1.07996 * 120.06327 * 180.02562 * 20 19 14 53 53 H 1.08006 * 120.03344 * 179.97438 * 21 10 9 54 54 H 1.09002 * 109.46784 * 224.99752 * 23 22 21 55 55 H 0.96696 * 114.00138 * 59.99720 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.6729 4.8655 1.3835 8 6 4.3351 5.5632 0.3826 9 6 4.6195 6.9028 0.5463 10 6 4.2322 7.5585 1.7135 11 6 4.5321 9.0007 1.8904 12 6 4.1403 9.6587 3.0546 13 6 4.4266 10.9992 3.2161 14 6 5.0919 11.6918 2.2205 15 14 5.4695 13.5076 2.4433 16 6 4.0567 14.5222 1.7760 17 6 5.6979 13.8767 4.2550 18 6 7.0308 13.9349 1.5209 19 6 5.4781 11.0450 1.0604 20 6 5.2017 9.7035 0.8905 21 6 3.5628 6.8565 2.7146 22 6 3.2853 5.5162 2.5473 23 6 2.5622 4.7565 3.6294 24 8 1.2088 4.5308 3.2300 25 14 2.5872 5.7474 5.2068 26 1 1.9133 7.0515 4.9828 27 1 1.8751 4.9985 6.2732 28 1 3.9936 5.9818 5.6218 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8332 0.9767 -0.8909 35 1 3.8341 0.9764 0.8891 36 1 3.3492 3.4419 -0.8412 37 1 4.9081 3.0255 -0.0900 38 1 4.6310 5.0556 -0.5235 39 1 5.1379 7.4443 -0.2312 40 1 3.6170 9.1199 3.8306 41 1 4.1268 11.5094 4.1195 42 1 3.1432 14.2722 2.3156 43 1 4.2772 15.5818 1.9056 44 1 3.9231 14.3062 0.7160 45 1 6.5245 13.2831 4.6454 46 1 5.9178 14.9363 4.3851 47 1 4.7844 13.6267 4.7946 48 1 6.8972 13.7189 0.4610 49 1 7.2510 14.9945 1.6505 50 1 7.8574 13.3413 1.9113 51 1 5.9968 11.5907 0.2862 52 1 5.5040 9.1993 -0.0154 53 1 3.2617 7.3618 3.6204 54 1 3.0568 3.7991 3.7938 55 1 1.1196 4.0196 2.4140 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419816.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:13:38 Heat of formation + Delta-G solvation = -110.768691 kcal Electronic energy + Delta-G solvation = -31281.653806 eV Core-core repulsion = 27179.205181 eV Total energy + Delta-G solvation = -4102.448624 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 374.187 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.63741 -40.13849 -39.14328 -38.25226 -37.47874 -33.56275 -32.89193 -32.63332 -31.76930 -30.52312 -29.53930 -28.89734 -28.29318 -28.26026 -26.80436 -25.06211 -23.88595 -23.70701 -23.46907 -22.03741 -21.47993 -19.57947 -18.40707 -18.08566 -17.90640 -17.36182 -16.90910 -16.77329 -16.43003 -16.10368 -15.74262 -15.61455 -15.32996 -15.17524 -14.99400 -14.64860 -14.36787 -14.27531 -14.16101 -14.04798 -13.92060 -13.81278 -13.71260 -13.54698 -13.40432 -13.22178 -13.11910 -13.07586 -12.99375 -12.91888 -12.61227 -12.51383 -12.32383 -12.25018 -12.18989 -11.99545 -11.87561 -11.76748 -11.18977 -11.08403 -10.92909 -10.75566 -10.74266 -10.61282 -10.15165 -10.03150 -9.81519 -8.70092 -0.33958 0.13280 0.54642 0.82649 1.11630 1.40569 1.43105 1.86427 1.86675 2.04463 2.05537 2.10758 2.55090 2.65252 2.68538 3.10400 3.46149 3.59478 3.62964 3.85759 3.88126 4.01254 4.06446 4.07144 4.11618 4.15331 4.20076 4.23980 4.27324 4.39034 4.41625 4.47705 4.48405 4.55254 4.65627 4.68801 4.80382 4.85079 4.85499 4.86052 4.89441 4.89868 4.91322 4.92050 4.98564 5.01097 5.06872 5.15466 5.16221 5.24877 5.27277 5.45887 5.59165 5.60634 5.64010 5.68475 5.71196 5.74383 6.14726 6.18452 6.30293 6.56915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.408 6.408 4 C 0.060 3.940 5 C 0.054 3.946 6 O -0.317 6.317 7 C 0.139 3.861 8 C -0.202 4.202 9 C -0.067 4.067 10 C -0.090 4.090 11 C -0.048 4.048 12 C -0.148 4.148 13 C -0.096 4.096 14 C -0.384 4.384 15 Si 1.126 2.874 16 C -0.464 4.464 17 C -0.463 4.463 18 C -0.459 4.459 19 C -0.094 4.094 20 C -0.135 4.135 21 C -0.089 4.089 22 C -0.156 4.156 23 C -0.083 4.083 24 O -0.551 6.551 25 Si 1.023 2.977 26 H -0.260 1.260 27 H -0.266 1.266 28 H -0.239 1.239 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.143 0.857 52 H 0.137 0.863 53 H 0.132 0.868 54 H 0.081 0.919 55 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 -1.016 -3.354 5.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.329 6.329 4 C -0.016 4.016 5 C -0.020 4.020 6 O -0.231 6.231 7 C 0.093 3.907 8 C -0.220 4.220 9 C -0.084 4.084 10 C -0.090 4.090 11 C -0.048 4.048 12 C -0.166 4.166 13 C -0.113 4.113 14 C -0.423 4.423 15 Si 1.313 2.687 16 C -0.570 4.570 17 C -0.570 4.570 18 C -0.567 4.567 19 C -0.111 4.111 20 C -0.153 4.153 21 C -0.107 4.107 22 C -0.157 4.157 23 C -0.191 4.191 24 O -0.358 6.358 25 Si 0.844 3.156 26 H -0.185 1.185 27 H -0.190 1.190 28 H -0.162 1.162 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.161 0.839 52 H 0.155 0.845 53 H 0.150 0.850 54 H 0.099 0.901 55 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.606 -0.291 -1.956 4.112 hybrid contribution 0.081 -1.227 -1.146 1.681 sum 3.687 -1.518 -3.102 5.052 Atomic orbital electron populations 1.21769 0.93584 1.03139 1.02518 1.22600 0.95909 0.82874 1.00925 1.87923 1.21448 1.27841 1.95648 1.22682 0.81824 0.94439 1.02698 1.23153 1.00861 0.92717 0.85263 1.86073 1.76317 1.19986 1.40695 1.18948 0.94474 0.83445 0.93793 1.21475 1.04461 0.95762 1.00327 1.21332 0.96821 0.93829 0.96459 1.18821 1.01748 0.92947 0.95521 1.18892 0.98813 0.91721 0.95328 1.21507 1.01536 0.96103 0.97472 1.21304 0.96914 0.93525 0.99603 1.28034 1.00758 1.17964 0.95549 0.77178 0.65844 0.59716 0.65975 1.26301 1.14347 1.09689 1.06631 1.26289 1.04813 1.05421 1.20482 1.26239 1.16012 1.05639 1.08774 1.21364 0.97826 0.93996 0.97953 1.21539 0.99423 0.95446 0.98877 1.21115 0.97417 0.92692 0.99435 1.19617 1.05151 0.94362 0.96606 1.25230 0.84275 1.04425 1.05154 1.86627 1.23925 1.77852 1.47374 0.84383 0.80623 0.77640 0.72997 1.18473 1.19040 1.16189 0.92657 0.92382 0.89564 0.92094 0.92814 0.88724 0.91962 0.90524 0.88024 0.82506 0.83089 0.86324 0.84479 0.91633 0.90654 0.91376 0.91294 0.90633 0.91109 0.90767 0.90650 0.91226 0.83913 0.84535 0.85017 0.90052 0.77552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.11 10.28 71.98 0.74 0.85 16 2 C 0.05 -0.04 6.66 71.98 0.48 0.44 16 3 O -0.41 -1.22 10.31 -144.35 -1.49 -2.70 16 4 C 0.06 -0.16 6.32 71.98 0.45 0.30 16 5 C 0.05 -0.14 5.12 71.98 0.37 0.23 16 6 O -0.32 -1.15 8.99 -87.39 -0.79 -1.93 16 7 C 0.14 0.69 6.62 22.56 0.15 0.84 16 8 C -0.20 -0.33 9.02 22.33 0.20 -0.13 16 9 C -0.07 -0.17 9.42 22.47 0.21 0.04 16 10 C -0.09 -0.57 5.88 -20.03 -0.12 -0.69 16 11 C -0.05 -0.30 5.88 -20.04 -0.12 -0.42 16 12 C -0.15 -0.90 9.43 22.49 0.21 -0.68 16 13 C -0.10 -0.28 9.28 22.24 0.21 -0.08 16 14 C -0.38 -0.25 4.60 22.31 0.10 -0.15 16 15 Si 1.13 -5.53 12.31 68.60 0.84 -4.68 16 16 C -0.46 1.21 8.65 113.37 0.98 2.19 16 17 C -0.46 1.54 8.52 113.37 0.97 2.51 16 18 C -0.46 1.95 8.52 113.37 0.97 2.91 16 19 C -0.09 -0.10 9.28 22.24 0.21 0.10 16 20 C -0.14 -0.42 9.43 22.49 0.21 -0.21 16 21 C -0.09 -0.66 8.03 22.46 0.18 -0.48 16 22 C -0.16 -1.11 5.27 -19.80 -0.10 -1.21 16 23 C -0.08 -0.53 2.33 71.24 0.17 -0.37 16 24 O -0.55 -4.85 12.65 -148.98 -1.89 -6.73 16 25 Si 1.02 5.44 25.74 68.60 1.77 7.20 16 26 H -0.26 -1.69 6.73 99.48 0.67 -1.02 16 27 H -0.27 -1.84 7.11 99.48 0.71 -1.13 16 28 H -0.24 -0.87 7.11 99.48 0.71 -0.17 16 29 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.06 -0.22 8.14 -2.38 -0.02 -0.24 16 33 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.08 -0.24 7.64 -2.39 -0.02 -0.26 16 37 H 0.10 -0.73 7.67 -2.39 -0.02 -0.75 16 38 H 0.16 -0.64 6.28 -2.91 -0.02 -0.66 16 39 H 0.15 -0.35 6.20 -2.91 -0.02 -0.37 16 40 H 0.12 0.55 6.20 -2.91 -0.02 0.53 16 41 H 0.14 -0.17 7.40 -2.91 -0.02 -0.19 16 42 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 43 H 0.07 -0.26 7.96 -2.38 -0.02 -0.27 16 44 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 45 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 46 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 47 H 0.07 -0.24 7.67 -2.39 -0.02 -0.26 16 48 H 0.07 -0.36 7.67 -2.39 -0.02 -0.38 16 49 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 50 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 51 H 0.14 -0.56 7.40 -2.91 -0.02 -0.58 16 52 H 0.14 -0.17 6.20 -2.91 -0.02 -0.19 16 53 H 0.13 0.82 3.02 -2.91 -0.01 0.82 16 54 H 0.08 0.37 7.82 -2.39 -0.02 0.35 16 55 H 0.38 2.24 8.60 -74.06 -0.64 1.60 16 Total: 0.00 -14.65 441.99 5.88 -8.78 By element: Atomic # 1 Polarization: -6.87 SS G_CDS: 0.96 Total: -5.91 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.46 Total: 5.98 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -4.16 Total: -11.37 kcal Atomic # 14 Polarization: -0.09 SS G_CDS: 2.61 Total: 2.52 kcal Total: -14.65 5.88 -8.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419816.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.993 kcal (2) G-P(sol) polarization free energy of solvation -14.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds