Wall clock time and date at job start Mon Mar 8 2021 09:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.47192 * 2 1 4 4 C 1.86301 * 109.47168 * 239.99884 * 2 1 3 5 5 C 1.86803 * 109.47031 * 119.99829 * 2 1 3 6 6 C 1.38322 * 119.87703 * 90.00254 * 5 2 1 7 7 C 1.38016 * 120.11965 * 180.23460 * 6 5 2 8 8 C 1.39336 * 119.87476 * 359.51273 * 7 6 5 9 9 C 1.48396 * 120.12100 * 180.21257 * 8 7 6 10 10 C 1.39321 * 120.11834 * 0.27357 * 9 8 7 11 11 C 1.38038 * 119.87704 * 179.97438 * 10 9 8 12 12 C 1.50705 * 119.93622 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47416 * 65.00200 * 12 11 10 14 14 Si 1.86304 * 109.46787 * 184.99773 * 12 11 10 15 15 H 1.48500 * 109.46949 * 60.00242 * 14 12 11 16 16 H 1.48500 * 109.46958 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47378 * 300.00252 * 14 12 11 18 18 C 1.38296 * 120.12151 * 359.97438 * 11 10 9 19 19 C 1.38344 * 120.24452 * 359.97438 * 18 11 10 20 20 C 1.50696 * 119.93735 * 180.02562 * 19 18 11 21 21 F 1.39894 * 109.47382 * 90.00556 * 20 19 18 22 22 F 1.39906 * 109.47094 * 210.00188 * 20 19 18 23 23 F 1.39906 * 109.47427 * 329.99923 * 20 19 18 24 24 C 1.37994 * 120.11984 * 359.74938 * 19 18 11 25 25 C 1.39334 * 119.76161 * 0.48041 * 8 7 6 26 26 C 1.38011 * 119.87865 * 359.75319 * 25 8 7 27 27 H 1.09005 * 109.46867 * 300.00010 * 1 2 3 28 28 H 1.08996 * 109.47016 * 60.00116 * 1 2 3 29 29 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47067 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47271 * 299.99999 * 3 2 1 32 32 H 1.08997 * 109.47450 * 59.99592 * 3 2 1 33 33 H 1.09004 * 109.46623 * 300.00053 * 4 2 1 34 34 H 1.08996 * 109.46889 * 59.99600 * 4 2 1 35 35 H 1.08997 * 109.46762 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.93718 * 359.94969 * 6 5 2 37 37 H 1.07998 * 120.06292 * 179.72237 * 7 6 5 38 38 H 1.08004 * 120.06013 * 359.97438 * 10 9 8 39 39 H 1.08999 * 109.47002 * 304.99565 * 12 11 10 40 40 H 0.96702 * 114.00129 * 59.99065 * 13 12 11 41 41 H 1.08006 * 119.87483 * 179.97438 * 18 11 10 42 42 H 1.07998 * 120.06254 * 180.27280 * 24 19 18 43 43 H 1.08004 * 120.06129 * 179.77085 * 25 8 7 44 44 H 1.08001 * 119.94506 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5253 6 6 2.7154 -2.2441 1.4882 7 6 3.1708 -2.9005 2.6136 8 6 3.4089 -2.1854 3.7856 9 6 3.9031 -2.8850 4.9974 10 6 4.1362 -4.2582 4.9657 11 6 4.5964 -4.9038 6.0957 12 6 4.8495 -6.3890 6.0628 13 8 5.9167 -6.6704 5.1551 14 14 5.3135 -6.9778 7.7684 15 1 4.2044 -6.6854 8.7116 16 1 5.5623 -8.4414 7.7361 17 1 6.5428 -6.2759 8.2170 18 6 4.8266 -4.1899 7.2576 19 6 4.5978 -2.8260 7.2944 20 6 4.8515 -2.0548 8.5639 21 9 6.1735 -1.5972 8.5754 22 9 3.9795 -0.9627 8.6284 23 9 4.6370 -2.8885 9.6668 24 6 4.1432 -2.1695 6.1689 25 6 3.1759 -0.8121 3.8172 26 6 2.7158 -0.1666 2.6875 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 2.1207 -1.9059 -1.5210 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8786 -1.5208 36 1 2.5337 -2.7967 0.5783 37 1 3.3456 -3.9659 2.5849 38 1 3.9571 -4.8166 4.0587 39 1 3.9471 -6.9042 5.7336 40 1 6.7529 -6.2434 5.3867 41 1 5.1862 -4.6991 8.1396 42 1 3.9691 -1.1040 6.1974 43 1 3.3552 -0.2537 4.7241 44 1 2.5345 0.8979 2.7109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:13:56 Heat of formation + Delta-G solvation = -181.648115 kcal Electronic energy + Delta-G solvation = -28573.837811 eV Core-core repulsion = 24163.930938 eV Total energy + Delta-G solvation = -4409.906873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.16727 -48.68336 -48.62271 -41.34429 -39.66313 -37.80738 -34.24341 -33.48690 -31.97229 -30.31096 -29.45429 -28.50585 -28.44549 -27.27407 -27.14906 -24.55370 -23.68224 -22.27232 -21.69824 -19.67811 -19.48701 -19.33796 -18.06062 -17.90435 -17.45278 -16.73870 -16.37947 -16.19338 -15.80399 -15.52169 -15.45823 -15.13204 -15.11554 -14.98572 -14.77503 -14.72631 -14.66418 -14.55330 -14.47729 -14.22309 -14.04418 -13.90849 -13.68826 -13.50396 -13.32991 -13.32309 -13.26877 -13.21590 -13.11945 -12.62065 -12.35752 -12.23473 -11.94991 -11.73463 -11.27788 -10.94316 -10.91237 -10.70913 -10.64207 -10.29915 -9.88318 -9.17072 -0.61578 -0.24341 0.47926 0.58353 0.99653 1.32151 1.40657 1.57905 1.65947 1.80773 1.81198 1.87376 2.23942 2.50186 2.62541 2.89802 2.98008 3.20188 3.37300 3.41609 3.44882 3.67342 3.83644 3.90853 3.94901 4.02517 4.26301 4.35540 4.40092 4.54275 4.57762 4.66734 4.67355 4.70501 4.71855 4.72481 4.73370 4.81299 4.89338 4.96704 5.00864 5.11275 5.30992 5.40793 5.46440 5.50544 5.52397 5.56734 5.58354 6.02485 6.37913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.365 4.365 6 C -0.085 4.085 7 C -0.116 4.116 8 C -0.044 4.044 9 C -0.040 4.040 10 C -0.051 4.051 11 C -0.115 4.115 12 C -0.078 4.078 13 O -0.535 6.535 14 Si 0.937 3.063 15 H -0.245 1.245 16 H -0.247 1.247 17 H -0.248 1.248 18 C -0.080 4.080 19 C -0.171 4.171 20 C 0.508 3.492 21 F -0.173 7.173 22 F -0.174 7.174 23 F -0.175 7.175 24 C -0.059 4.059 25 C -0.118 4.118 26 C -0.085 4.085 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.379 0.621 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -0.075 -3.044 3.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.406 4.406 6 C -0.103 4.103 7 C -0.134 4.134 8 C -0.044 4.044 9 C -0.040 4.040 10 C -0.068 4.068 11 C -0.116 4.116 12 C -0.189 4.189 13 O -0.340 6.340 14 Si 0.759 3.241 15 H -0.168 1.168 16 H -0.170 1.170 17 H -0.172 1.172 18 C -0.098 4.098 19 C -0.173 4.173 20 C 0.454 3.546 21 F -0.155 7.155 22 F -0.155 7.155 23 F -0.157 7.157 24 C -0.076 4.076 25 C -0.136 4.136 26 C -0.103 4.103 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.226 0.774 41 H 0.152 0.848 42 H 0.160 0.840 43 H 0.140 0.860 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.086 -0.729 -2.405 2.738 hybrid contribution 0.386 0.624 0.365 0.820 sum -0.701 -0.105 -2.040 2.159 Atomic orbital electron populations 1.26128 1.20433 1.04602 1.04525 0.78186 0.66880 0.66130 0.63679 1.26141 1.06483 1.18553 1.04605 1.26137 1.06485 1.08058 1.15077 1.27499 1.03307 0.99528 1.10269 1.21038 0.97010 0.94608 0.97680 1.21307 0.99695 0.99820 0.92575 1.18643 1.00051 0.93435 0.92272 1.18795 0.99283 0.93125 0.92766 1.21349 0.94088 0.93173 0.98239 1.20223 1.01101 0.96912 0.93339 1.24970 0.94690 0.92640 1.06594 1.86538 1.21129 1.74220 1.52099 0.85841 0.81920 0.81544 0.74836 1.16831 1.17013 1.17150 1.20895 0.97767 0.92656 0.98456 1.19773 1.08914 0.94842 0.93737 1.18243 0.74477 0.77692 0.84174 1.93250 1.35943 1.89516 1.96758 1.93213 1.69544 1.56096 1.96673 1.93211 1.94554 1.71486 1.56406 1.21057 0.95128 1.00721 0.90737 1.21310 0.99821 0.93515 0.98960 1.21033 0.96985 0.99813 0.92490 0.91161 0.91006 0.91154 0.91036 0.90921 0.91160 0.91151 0.90919 0.91030 0.85757 0.85785 0.84009 0.85804 0.77412 0.84845 0.84021 0.85964 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.84 8.65 101.05 0.87 1.72 16 2 Si 1.06 -3.17 12.31 -169.99 -2.09 -5.26 16 3 C -0.45 0.98 8.52 101.05 0.86 1.84 16 4 C -0.45 1.01 8.53 101.05 0.86 1.87 16 5 C -0.36 0.31 4.60 -39.52 -0.18 0.12 16 6 C -0.09 0.04 9.28 -39.63 -0.37 -0.33 16 7 C -0.12 -0.01 9.43 -39.25 -0.37 -0.38 16 8 C -0.04 -0.03 5.88 -104.90 -0.62 -0.65 16 9 C -0.04 -0.02 5.88 -104.89 -0.62 -0.64 16 10 C -0.05 0.01 9.06 -39.25 -0.36 -0.34 16 11 C -0.12 0.05 5.35 -104.67 -0.56 -0.51 16 12 C -0.08 0.12 2.80 36.01 0.10 0.22 16 13 O -0.53 0.50 12.83 -35.23 -0.45 0.05 16 14 Si 0.94 -0.98 25.13 -169.99 -4.27 -5.25 16 15 H -0.24 0.06 7.11 56.52 0.40 0.46 16 16 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 17 H -0.25 0.19 7.04 56.52 0.40 0.59 16 18 C -0.08 -0.03 8.02 -39.52 -0.32 -0.35 16 19 C -0.17 -0.18 5.45 -104.67 -0.57 -0.75 16 20 C 0.51 0.90 3.36 36.00 0.12 1.02 16 21 F -0.17 -0.42 17.30 2.25 0.04 -0.38 16 22 F -0.17 -0.35 16.47 2.25 0.04 -0.32 16 23 F -0.18 -0.41 16.46 2.25 0.04 -0.37 16 24 C -0.06 -0.03 8.78 -39.25 -0.34 -0.38 16 25 C -0.12 -0.04 9.43 -39.26 -0.37 -0.41 16 26 C -0.09 0.03 9.28 -39.63 -0.37 -0.34 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 33 H 0.07 -0.17 7.67 -51.93 -0.40 -0.57 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.12 -0.30 7.40 -52.49 -0.39 -0.68 16 37 H 0.12 -0.19 6.21 -52.49 -0.33 -0.51 16 38 H 0.14 -0.22 6.21 -52.48 -0.33 -0.55 16 39 H 0.12 -0.33 7.96 -51.93 -0.41 -0.74 16 40 H 0.38 -1.48 8.70 45.56 0.40 -1.08 16 41 H 0.13 -0.04 4.38 -52.48 -0.23 -0.27 16 42 H 0.14 -0.10 5.76 -52.49 -0.30 -0.40 16 43 H 0.12 -0.14 6.21 -52.48 -0.33 -0.46 16 44 H 0.12 -0.27 7.40 -52.49 -0.39 -0.66 16 LS Contribution 375.33 15.07 5.66 5.66 Total: 0.00 -5.04 375.33 -8.06 -13.10 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: -4.79 Total: -8.96 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.22 Total: 1.73 kcal Atomic # 8 Polarization: 0.50 SS G_CDS: -0.45 Total: 0.05 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.11 Total: -1.07 kcal Atomic # 14 Polarization: -4.15 SS G_CDS: -6.36 Total: -10.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -5.04 -8.06 -13.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.544 kcal (2) G-P(sol) polarization free energy of solvation -5.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds