Wall clock time and date at job start Mon Mar 8 2021 09:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.47192 * 2 1 4 4 C 1.86301 * 109.47168 * 239.99884 * 2 1 3 5 5 C 1.86803 * 109.47031 * 119.99829 * 2 1 3 6 6 C 1.38322 * 119.87703 * 90.00254 * 5 2 1 7 7 C 1.38016 * 120.11965 * 180.23460 * 6 5 2 8 8 C 1.39336 * 119.87476 * 359.51273 * 7 6 5 9 9 C 1.48396 * 120.12100 * 180.21257 * 8 7 6 10 10 C 1.39321 * 120.11834 * 0.27357 * 9 8 7 11 11 C 1.38038 * 119.87704 * 179.97438 * 10 9 8 12 12 C 1.50705 * 119.93622 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47416 * 65.00200 * 12 11 10 14 14 Si 1.86304 * 109.46787 * 184.99773 * 12 11 10 15 15 H 1.48500 * 109.46949 * 60.00242 * 14 12 11 16 16 H 1.48500 * 109.46958 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47378 * 300.00252 * 14 12 11 18 18 C 1.38296 * 120.12151 * 359.97438 * 11 10 9 19 19 C 1.38344 * 120.24452 * 359.97438 * 18 11 10 20 20 C 1.50696 * 119.93735 * 180.02562 * 19 18 11 21 21 F 1.39894 * 109.47382 * 90.00556 * 20 19 18 22 22 F 1.39906 * 109.47094 * 210.00188 * 20 19 18 23 23 F 1.39906 * 109.47427 * 329.99923 * 20 19 18 24 24 C 1.37994 * 120.11984 * 359.74938 * 19 18 11 25 25 C 1.39334 * 119.76161 * 0.48041 * 8 7 6 26 26 C 1.38011 * 119.87865 * 359.75319 * 25 8 7 27 27 H 1.09005 * 109.46867 * 300.00010 * 1 2 3 28 28 H 1.08996 * 109.47016 * 60.00116 * 1 2 3 29 29 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47067 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47271 * 299.99999 * 3 2 1 32 32 H 1.08997 * 109.47450 * 59.99592 * 3 2 1 33 33 H 1.09004 * 109.46623 * 300.00053 * 4 2 1 34 34 H 1.08996 * 109.46889 * 59.99600 * 4 2 1 35 35 H 1.08997 * 109.46762 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.93718 * 359.94969 * 6 5 2 37 37 H 1.07998 * 120.06292 * 179.72237 * 7 6 5 38 38 H 1.08004 * 120.06013 * 359.97438 * 10 9 8 39 39 H 1.08999 * 109.47002 * 304.99565 * 12 11 10 40 40 H 0.96702 * 114.00129 * 59.99065 * 13 12 11 41 41 H 1.08006 * 119.87483 * 179.97438 * 18 11 10 42 42 H 1.07998 * 120.06254 * 180.27280 * 24 19 18 43 43 H 1.08004 * 120.06129 * 179.77085 * 25 8 7 44 44 H 1.08001 * 119.94506 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5253 6 6 2.7154 -2.2441 1.4882 7 6 3.1708 -2.9005 2.6136 8 6 3.4089 -2.1854 3.7856 9 6 3.9031 -2.8850 4.9974 10 6 4.1362 -4.2582 4.9657 11 6 4.5964 -4.9038 6.0957 12 6 4.8495 -6.3890 6.0628 13 8 5.9167 -6.6704 5.1551 14 14 5.3135 -6.9778 7.7684 15 1 4.2044 -6.6854 8.7116 16 1 5.5623 -8.4414 7.7361 17 1 6.5428 -6.2759 8.2170 18 6 4.8266 -4.1899 7.2576 19 6 4.5978 -2.8260 7.2944 20 6 4.8515 -2.0548 8.5639 21 9 6.1735 -1.5972 8.5754 22 9 3.9795 -0.9627 8.6284 23 9 4.6370 -2.8885 9.6668 24 6 4.1432 -2.1695 6.1689 25 6 3.1759 -0.8121 3.8172 26 6 2.7158 -0.1666 2.6875 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 2.1207 -1.9059 -1.5210 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8786 -1.5208 36 1 2.5337 -2.7967 0.5783 37 1 3.3456 -3.9659 2.5849 38 1 3.9571 -4.8166 4.0587 39 1 3.9471 -6.9042 5.7336 40 1 6.7529 -6.2434 5.3867 41 1 5.1862 -4.6991 8.1396 42 1 3.9691 -1.1040 6.1974 43 1 3.3552 -0.2537 4.7241 44 1 2.5345 0.8979 2.7109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:13:55 Heat of formation + Delta-G solvation = -170.106997 kcal Electronic energy + Delta-G solvation = -28573.337350 eV Core-core repulsion = 24163.930938 eV Total energy + Delta-G solvation = -4409.406412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.33028 -48.84996 -48.79458 -41.31065 -39.58668 -37.71809 -34.20846 -33.46282 -31.89219 -30.23724 -29.28127 -28.30620 -28.25602 -27.34057 -27.08092 -24.52009 -23.63451 -22.27594 -21.64985 -19.71840 -19.63724 -19.46719 -18.00048 -17.87589 -17.40177 -16.71393 -16.29495 -16.12222 -15.75381 -15.67925 -15.56010 -15.25191 -15.11792 -15.06114 -14.95103 -14.78967 -14.59177 -14.47036 -14.43366 -14.03366 -13.87418 -13.78514 -13.66017 -13.41101 -13.24241 -13.20264 -13.10504 -13.06851 -12.94043 -12.58413 -12.30535 -12.19346 -11.89661 -11.67113 -11.17420 -10.78439 -10.74120 -10.60943 -10.56595 -10.26379 -9.82189 -9.12656 -0.59322 -0.23976 0.54087 0.63097 1.08880 1.38087 1.44907 1.47368 1.85739 1.86274 2.03484 2.04152 2.30349 2.51594 2.68184 2.80093 3.03620 3.23818 3.29781 3.42476 3.56736 3.72021 3.89979 3.94895 3.99025 4.11488 4.33817 4.41644 4.53411 4.62760 4.65760 4.81495 4.85445 4.86013 4.89537 4.90292 4.91463 4.92046 4.97088 5.01553 5.06445 5.19237 5.36586 5.55281 5.59591 5.61346 5.63020 5.69237 5.72695 6.11817 6.63157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.127 2.873 3 C -0.464 4.464 4 C -0.462 4.462 5 C -0.376 4.376 6 C -0.097 4.097 7 C -0.127 4.127 8 C -0.059 4.059 9 C -0.044 4.044 10 C -0.051 4.051 11 C -0.112 4.112 12 C -0.069 4.069 13 O -0.545 6.545 14 Si 0.958 3.042 15 H -0.257 1.257 16 H -0.264 1.264 17 H -0.253 1.253 18 C -0.088 4.088 19 C -0.180 4.180 20 C 0.508 3.492 21 F -0.179 7.179 22 F -0.177 7.177 23 F -0.180 7.180 24 C -0.065 4.065 25 C -0.134 4.134 26 C -0.098 4.098 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.390 0.610 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.129 0.871 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 -0.229 -4.085 4.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.571 4.571 4 C -0.569 4.569 5 C -0.415 4.415 6 C -0.115 4.115 7 C -0.145 4.145 8 C -0.059 4.059 9 C -0.044 4.044 10 C -0.068 4.068 11 C -0.112 4.112 12 C -0.180 4.180 13 O -0.352 6.352 14 Si 0.783 3.217 15 H -0.181 1.181 16 H -0.189 1.189 17 H -0.177 1.177 18 C -0.106 4.106 19 C -0.181 4.181 20 C 0.454 3.546 21 F -0.160 7.160 22 F -0.158 7.158 23 F -0.161 7.161 24 C -0.083 4.083 25 C -0.151 4.151 26 C -0.116 4.116 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.156 0.844 40 H 0.240 0.760 41 H 0.155 0.845 42 H 0.166 0.834 43 H 0.147 0.853 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.295 -0.879 -3.431 3.771 hybrid contribution 0.456 0.682 0.692 1.073 sum -0.839 -0.197 -2.739 2.871 Atomic orbital electron populations 1.26304 1.21743 1.04471 1.04487 0.77156 0.65077 0.64558 0.61786 1.26301 1.06417 1.19555 1.04804 1.26274 1.06433 1.08542 1.15666 1.28020 1.02705 0.99747 1.11068 1.21360 0.96831 0.95030 0.98260 1.21559 0.99688 1.00627 0.92599 1.18786 1.00749 0.93778 0.92630 1.18894 0.99311 0.93537 0.92705 1.21524 0.93577 0.92991 0.98749 1.20311 1.00586 0.97373 0.92922 1.24900 0.95201 0.91888 1.05985 1.86512 1.21906 1.74519 1.52292 0.85540 0.81123 0.80046 0.74995 1.18119 1.18899 1.17675 1.21020 0.98028 0.92553 0.99029 1.19765 1.09764 0.95120 0.93453 1.18352 0.74182 0.77627 0.84422 1.93234 1.36356 1.89605 1.96798 1.93202 1.69600 1.56296 1.96707 1.93197 1.94563 1.71597 1.56752 1.21166 0.95198 1.01194 0.90711 1.21539 1.00167 0.93758 0.99671 1.21326 0.96973 1.00754 0.92543 0.91494 0.90770 0.91343 0.91305 0.90761 0.90975 0.90781 0.90763 0.91259 0.84016 0.84526 0.82678 0.84408 0.76031 0.84547 0.83394 0.85307 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.95 8.65 113.37 0.98 2.93 16 2 Si 1.13 -7.45 12.31 68.60 0.84 -6.61 16 3 C -0.46 2.24 8.52 113.37 0.97 3.21 16 4 C -0.46 2.44 8.53 113.37 0.97 3.40 16 5 C -0.38 0.76 4.60 22.31 0.10 0.86 16 6 C -0.10 0.14 9.28 22.24 0.21 0.34 16 7 C -0.13 0.00 9.43 22.48 0.21 0.21 16 8 C -0.06 -0.10 5.88 -20.04 -0.12 -0.22 16 9 C -0.04 -0.06 5.88 -20.04 -0.12 -0.18 16 10 C -0.05 0.04 9.06 22.48 0.20 0.25 16 11 C -0.11 0.12 5.35 -19.90 -0.11 0.02 16 12 C -0.07 0.25 2.80 71.24 0.20 0.45 16 13 O -0.55 1.45 12.83 -148.98 -1.91 -0.46 16 14 Si 0.96 -1.74 25.13 68.60 1.72 -0.02 16 15 H -0.26 -0.03 7.11 99.48 0.71 0.68 16 16 H -0.26 -0.29 7.11 99.48 0.71 0.42 16 17 H -0.25 0.30 7.04 99.48 0.70 1.00 16 18 C -0.09 -0.10 8.02 22.31 0.18 0.08 16 19 C -0.18 -0.50 5.45 -19.90 -0.11 -0.61 16 20 C 0.51 2.25 3.36 71.23 0.24 2.49 16 21 F -0.18 -1.02 17.30 44.97 0.78 -0.24 16 22 F -0.18 -0.88 16.47 44.97 0.74 -0.13 16 23 F -0.18 -0.99 16.46 44.97 0.74 -0.25 16 24 C -0.06 -0.11 8.78 22.48 0.20 0.08 16 25 C -0.13 -0.15 9.43 22.48 0.21 0.06 16 26 C -0.10 0.06 9.28 22.24 0.21 0.27 16 27 H 0.07 -0.23 7.96 -2.38 -0.02 -0.24 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 32 H 0.07 -0.37 7.67 -2.39 -0.02 -0.39 16 33 H 0.07 -0.43 7.67 -2.38 -0.02 -0.45 16 34 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 35 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 36 H 0.14 -0.82 7.40 -2.91 -0.02 -0.84 16 37 H 0.14 -0.50 6.21 -2.91 -0.02 -0.52 16 38 H 0.16 -0.62 6.21 -2.91 -0.02 -0.64 16 39 H 0.14 -0.88 7.96 -2.39 -0.02 -0.90 16 40 H 0.39 -3.27 8.70 -74.06 -0.64 -3.91 16 41 H 0.14 -0.01 4.38 -2.91 -0.01 -0.02 16 42 H 0.15 -0.07 5.76 -2.91 -0.02 -0.09 16 43 H 0.13 -0.19 6.21 -2.91 -0.02 -0.20 16 44 H 0.14 -0.63 7.40 -2.91 -0.02 -0.65 16 Total: 0.00 -11.38 375.33 8.49 -2.89 By element: Atomic # 1 Polarization: -9.98 SS G_CDS: 1.15 Total: -8.82 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 4.42 Total: 13.65 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: -1.91 Total: -0.46 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 2.26 Total: -0.63 kcal Atomic # 14 Polarization: -9.19 SS G_CDS: 2.57 Total: -6.63 kcal Total: -11.38 8.49 -2.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.213 kcal (2) G-P(sol) polarization free energy of solvation -11.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds