Wall clock time and date at job start Mon Mar 8 2021 09:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86300 * 109.46920 * 2 1 4 4 C 1.86299 * 109.47142 * 239.99913 * 2 1 3 5 5 C 1.86801 * 109.46938 * 119.99879 * 2 1 3 6 6 C 1.38314 * 119.87676 * 90.00648 * 5 2 1 7 7 C 1.38025 * 120.12338 * 180.02562 * 6 5 2 8 8 C 1.39338 * 119.87049 * 359.97355 * 7 6 5 9 9 C 1.48398 * 120.11466 * 179.97438 * 8 7 6 10 10 C 1.39314 * 120.12210 * 303.36767 * 9 8 7 11 11 C 1.38040 * 119.87789 * 180.02562 * 10 9 8 12 12 C 1.38297 * 120.11961 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.87576 * 180.02562 * 12 11 10 14 14 F 1.39908 * 109.47077 * 0.02562 * 13 12 11 15 15 F 1.39901 * 109.46853 * 120.00290 * 13 12 11 16 16 F 1.39895 * 109.47248 * 240.00106 * 13 12 11 17 17 C 1.38339 * 120.24632 * 0.02748 * 12 11 10 18 18 C 1.37998 * 120.11992 * 359.67544 * 17 12 11 19 19 C 1.50701 * 120.06293 * 180.32370 * 18 17 12 20 20 O 1.42899 * 109.47453 * 105.35325 * 19 18 17 21 21 Si 1.86305 * 109.47001 * 345.35377 * 19 18 17 22 22 H 1.48502 * 109.47031 * 59.99965 * 21 19 18 23 23 H 1.48493 * 109.47221 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47062 * 300.00466 * 21 19 18 25 25 C 1.39334 * 119.76389 * 359.95307 * 8 7 6 26 26 C 1.38016 * 119.87460 * 0.09600 * 25 8 7 27 27 H 1.09000 * 109.47309 * 300.00115 * 1 2 3 28 28 H 1.08998 * 109.47257 * 59.99964 * 1 2 3 29 29 H 1.09007 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46941 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47450 * 299.99599 * 3 2 1 32 32 H 1.08996 * 109.47564 * 60.00175 * 3 2 1 33 33 H 1.08995 * 109.46959 * 300.00345 * 4 2 1 34 34 H 1.08998 * 109.46944 * 59.99931 * 4 2 1 35 35 H 1.09000 * 109.46889 * 180.02562 * 4 2 1 36 36 H 1.07998 * 119.94396 * 359.97438 * 6 5 2 37 37 H 1.07997 * 120.06640 * 179.69882 * 7 6 5 38 38 H 1.08000 * 120.05865 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.93469 * 180.02562 * 11 10 9 40 40 H 1.08000 * 119.93735 * 179.97438 * 17 12 11 41 41 H 1.09006 * 109.46866 * 225.35964 * 19 18 17 42 42 H 0.96698 * 113.99583 * 179.97438 * 20 19 18 43 43 H 1.07996 * 120.06354 * 180.02562 * 25 8 7 44 44 H 1.08005 * 119.93987 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7154 -2.2440 1.4882 7 6 3.1749 -2.8999 2.6123 8 6 3.4079 -2.1856 3.7858 9 6 3.9014 -2.8854 4.9978 10 6 3.1846 -3.9561 5.5275 11 6 3.6480 -4.6031 6.6554 12 6 4.8219 -4.1905 7.2592 13 6 5.3231 -4.9012 8.4900 14 9 4.4393 -5.9326 8.8253 15 9 6.5899 -5.4374 8.2354 16 9 5.4055 -3.9936 9.5514 17 6 5.5376 -3.1278 6.7374 18 6 5.0868 -2.4778 5.6067 19 6 5.8714 -1.3250 5.0353 20 8 6.5500 -1.7506 3.8519 21 14 7.1183 -0.7400 6.2898 22 1 8.0443 -1.8521 6.6231 23 1 7.8910 0.3963 5.7270 24 1 6.4132 -0.2977 7.5196 25 6 3.1761 -0.8121 3.8171 26 6 2.7157 -0.1666 2.6874 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 2.1206 -1.9058 -1.5211 34 1 2.1207 -0.3644 -2.4111 35 1 3.5740 -0.8786 -1.5208 36 1 2.5342 -2.7966 0.5782 37 1 3.3494 -3.9653 2.5837 38 1 2.2676 -4.2789 5.0571 39 1 3.0933 -5.4336 7.0666 40 1 6.4535 -2.8095 7.2132 41 1 5.1916 -0.5087 4.7907 42 1 7.0759 -1.0578 3.4294 43 1 3.3554 -0.2537 4.7240 44 1 2.5353 0.8980 2.7106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:14:05 Heat of formation + Delta-G solvation = -177.208535 kcal Electronic energy + Delta-G solvation = -28982.167660 eV Core-core repulsion = 24572.453302 eV Total energy + Delta-G solvation = -4409.714358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.10094 -48.62222 -48.55312 -41.34131 -39.42596 -37.72241 -34.29293 -33.08763 -31.88889 -30.81092 -29.53261 -28.48102 -28.44014 -27.10060 -26.86363 -24.03533 -23.31471 -22.78855 -21.74596 -19.42260 -19.38408 -19.24027 -18.62857 -18.22282 -17.12199 -16.58618 -16.08034 -15.83362 -15.69819 -15.59209 -15.46509 -15.16765 -15.04046 -14.99178 -14.71446 -14.70746 -14.48408 -14.34357 -14.25884 -14.16758 -14.06859 -14.00817 -13.86325 -13.51925 -13.40766 -13.29519 -13.26511 -13.13253 -13.05817 -12.50185 -12.28274 -12.10330 -12.05780 -11.85072 -11.09315 -10.93675 -10.86887 -10.44719 -10.38339 -10.18952 -9.78109 -9.38450 -0.45846 0.00640 0.38391 0.52797 1.00837 1.32506 1.38845 1.65832 1.68564 1.80256 1.81918 1.90958 2.20652 2.51668 2.70399 2.89878 2.97296 3.28133 3.43864 3.48586 3.60790 3.73488 3.95563 3.97521 4.07040 4.15460 4.30833 4.35704 4.49522 4.59853 4.65866 4.67103 4.68600 4.72195 4.72488 4.73062 4.73955 4.85594 4.95839 5.01455 5.09532 5.21101 5.35382 5.41804 5.47231 5.50991 5.57497 5.59165 5.60900 6.08304 6.49815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.450 4.450 5 C -0.365 4.365 6 C -0.085 4.085 7 C -0.106 4.106 8 C -0.038 4.038 9 C 0.012 3.988 10 C -0.107 4.107 11 C -0.063 4.063 12 C -0.178 4.178 13 C 0.508 3.492 14 F -0.175 7.175 15 F -0.174 7.174 16 F -0.175 7.175 17 C -0.071 4.071 18 C -0.063 4.063 19 C -0.082 4.082 20 O -0.535 6.535 21 Si 0.925 3.075 22 H -0.243 1.243 23 H -0.248 1.248 24 H -0.243 1.243 25 C -0.117 4.117 26 C -0.087 4.087 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.381 0.619 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 3.197 -3.404 5.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.558 4.558 5 C -0.407 4.407 6 C -0.103 4.103 7 C -0.124 4.124 8 C -0.038 4.038 9 C 0.012 3.988 10 C -0.125 4.125 11 C -0.081 4.081 12 C -0.180 4.180 13 C 0.454 3.546 14 F -0.156 7.156 15 F -0.156 7.156 16 F -0.157 7.157 17 C -0.089 4.089 18 C -0.063 4.063 19 C -0.193 4.193 20 O -0.341 6.341 21 Si 0.747 3.253 22 H -0.167 1.167 23 H -0.171 1.171 24 H -0.166 1.166 25 C -0.135 4.135 26 C -0.105 4.105 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.102 0.898 42 H 0.228 0.772 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.531 2.865 -2.542 4.125 hybrid contribution 0.183 0.043 0.029 0.190 sum -1.348 2.908 -2.513 4.073 Atomic orbital electron populations 1.26133 1.20518 1.04577 1.04476 0.78182 0.66828 0.66106 0.63797 1.26135 1.06451 1.18574 1.04554 1.26141 1.06490 1.08057 1.15087 1.27414 1.03642 0.99469 1.10136 1.21006 0.97064 0.94605 0.97618 1.21217 0.99121 0.99691 0.92399 1.18607 0.99441 0.93413 0.92350 1.18915 0.92900 0.93827 0.93142 1.21282 1.00397 0.95025 0.95817 1.21029 0.93626 0.98848 0.94558 1.19906 0.99741 1.00645 0.97675 1.18256 0.75553 0.77110 0.83676 1.93184 1.68637 1.60445 1.93317 1.93242 1.41394 1.86836 1.94096 1.93233 1.96069 1.67009 1.59344 1.20728 0.98868 0.93801 0.95506 1.19186 0.94922 0.97510 0.94719 1.24801 1.01102 0.97862 0.95498 1.86524 1.66750 1.40730 1.40112 0.86048 0.79619 0.80706 0.78957 1.16652 1.17137 1.16611 1.21208 1.00277 0.93240 0.98779 1.20985 0.97352 0.99646 0.92537 0.91184 0.91063 0.91171 0.91051 0.90972 0.91194 0.91179 0.90989 0.91032 0.85952 0.86145 0.84085 0.83717 0.84765 0.89821 0.77213 0.86123 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.90 8.65 101.05 0.87 1.77 16 2 Si 1.06 -3.31 12.31 -169.99 -2.09 -5.41 16 3 C -0.45 1.12 8.52 101.05 0.86 1.98 16 4 C -0.45 1.00 8.52 101.05 0.86 1.86 16 5 C -0.36 0.38 4.60 -39.52 -0.18 0.19 16 6 C -0.09 0.03 9.28 -39.63 -0.37 -0.34 16 7 C -0.11 -0.07 9.63 -39.25 -0.38 -0.44 16 8 C -0.04 -0.03 4.85 -104.90 -0.51 -0.54 16 9 C 0.01 0.01 5.40 -104.90 -0.57 -0.55 16 10 C -0.11 -0.01 9.63 -39.25 -0.38 -0.39 16 11 C -0.06 -0.02 9.42 -39.63 -0.37 -0.39 16 12 C -0.18 -0.30 5.38 -104.56 -0.56 -0.86 16 13 C 0.51 1.18 3.31 36.01 0.12 1.30 16 14 F -0.17 -0.39 15.96 2.25 0.04 -0.35 16 15 F -0.17 -0.56 17.23 2.25 0.04 -0.52 16 16 F -0.18 -0.50 17.23 2.25 0.04 -0.47 16 17 C -0.07 -0.12 8.20 -39.63 -0.32 -0.45 16 18 C -0.06 -0.09 5.30 -104.29 -0.55 -0.64 16 19 C -0.08 0.02 2.07 36.01 0.07 0.09 16 20 O -0.54 -0.12 12.80 -35.23 -0.45 -0.57 16 21 Si 0.93 -0.33 25.48 -169.99 -4.33 -4.66 16 22 H -0.24 -0.23 6.75 56.52 0.38 0.15 16 23 H -0.25 0.14 7.11 56.52 0.40 0.54 16 24 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 25 C -0.12 0.00 7.95 -39.26 -0.31 -0.31 16 26 C -0.09 0.07 9.28 -39.63 -0.37 -0.30 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 32 H 0.07 -0.19 7.67 -51.93 -0.40 -0.59 16 33 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 36 H 0.12 -0.25 7.40 -52.49 -0.39 -0.64 16 37 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 38 H 0.14 -0.25 8.06 -52.49 -0.42 -0.67 16 39 H 0.15 -0.19 7.14 -52.49 -0.37 -0.57 16 40 H 0.13 0.15 4.88 -52.49 -0.26 -0.11 16 41 H 0.08 -0.14 4.95 -51.93 -0.26 -0.40 16 42 H 0.38 -1.48 8.74 45.56 0.40 -1.08 16 43 H 0.12 -0.16 7.02 -52.49 -0.37 -0.53 16 44 H 0.12 -0.33 7.40 -52.48 -0.39 -0.72 16 LS Contribution 376.68 15.07 5.68 5.68 Total: 0.00 -5.36 376.68 -8.15 -13.51 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: -4.99 Total: -9.18 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.08 Total: 1.97 kcal Atomic # 8 Polarization: -0.12 SS G_CDS: -0.45 Total: -0.57 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.11 Total: -1.34 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: -6.42 Total: -10.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -5.36 -8.15 -13.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.695 kcal (2) G-P(sol) polarization free energy of solvation -5.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds