Wall clock time and date at job start Mon Mar 8 2021 09:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86300 * 109.46920 * 2 1 4 4 C 1.86299 * 109.47142 * 239.99913 * 2 1 3 5 5 C 1.86801 * 109.46938 * 119.99879 * 2 1 3 6 6 C 1.38314 * 119.87676 * 90.00648 * 5 2 1 7 7 C 1.38025 * 120.12338 * 180.02562 * 6 5 2 8 8 C 1.39338 * 119.87049 * 359.97355 * 7 6 5 9 9 C 1.48398 * 120.11466 * 179.97438 * 8 7 6 10 10 C 1.39314 * 120.12210 * 303.36767 * 9 8 7 11 11 C 1.38040 * 119.87789 * 180.02562 * 10 9 8 12 12 C 1.38297 * 120.11961 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.87576 * 180.02562 * 12 11 10 14 14 F 1.39908 * 109.47077 * 0.02562 * 13 12 11 15 15 F 1.39901 * 109.46853 * 120.00290 * 13 12 11 16 16 F 1.39895 * 109.47248 * 240.00106 * 13 12 11 17 17 C 1.38339 * 120.24632 * 0.02748 * 12 11 10 18 18 C 1.37998 * 120.11992 * 359.67544 * 17 12 11 19 19 C 1.50701 * 120.06293 * 180.32370 * 18 17 12 20 20 O 1.42899 * 109.47453 * 105.35325 * 19 18 17 21 21 Si 1.86305 * 109.47001 * 345.35377 * 19 18 17 22 22 H 1.48502 * 109.47031 * 59.99965 * 21 19 18 23 23 H 1.48493 * 109.47221 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47062 * 300.00466 * 21 19 18 25 25 C 1.39334 * 119.76389 * 359.95307 * 8 7 6 26 26 C 1.38016 * 119.87460 * 0.09600 * 25 8 7 27 27 H 1.09000 * 109.47309 * 300.00115 * 1 2 3 28 28 H 1.08998 * 109.47257 * 59.99964 * 1 2 3 29 29 H 1.09007 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46941 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47450 * 299.99599 * 3 2 1 32 32 H 1.08996 * 109.47564 * 60.00175 * 3 2 1 33 33 H 1.08995 * 109.46959 * 300.00345 * 4 2 1 34 34 H 1.08998 * 109.46944 * 59.99931 * 4 2 1 35 35 H 1.09000 * 109.46889 * 180.02562 * 4 2 1 36 36 H 1.07998 * 119.94396 * 359.97438 * 6 5 2 37 37 H 1.07997 * 120.06640 * 179.69882 * 7 6 5 38 38 H 1.08000 * 120.05865 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.93469 * 180.02562 * 11 10 9 40 40 H 1.08000 * 119.93735 * 179.97438 * 17 12 11 41 41 H 1.09006 * 109.46866 * 225.35964 * 19 18 17 42 42 H 0.96698 * 113.99583 * 179.97438 * 20 19 18 43 43 H 1.07996 * 120.06354 * 180.02562 * 25 8 7 44 44 H 1.08005 * 119.93987 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7154 -2.2440 1.4882 7 6 3.1749 -2.8999 2.6123 8 6 3.4079 -2.1856 3.7858 9 6 3.9014 -2.8854 4.9978 10 6 3.1846 -3.9561 5.5275 11 6 3.6480 -4.6031 6.6554 12 6 4.8219 -4.1905 7.2592 13 6 5.3231 -4.9012 8.4900 14 9 4.4393 -5.9326 8.8253 15 9 6.5899 -5.4374 8.2354 16 9 5.4055 -3.9936 9.5514 17 6 5.5376 -3.1278 6.7374 18 6 5.0868 -2.4778 5.6067 19 6 5.8714 -1.3250 5.0353 20 8 6.5500 -1.7506 3.8519 21 14 7.1183 -0.7400 6.2898 22 1 8.0443 -1.8521 6.6231 23 1 7.8910 0.3963 5.7270 24 1 6.4132 -0.2977 7.5196 25 6 3.1761 -0.8121 3.8171 26 6 2.7157 -0.1666 2.6874 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2703 0.8899 33 1 2.1206 -1.9058 -1.5211 34 1 2.1207 -0.3644 -2.4111 35 1 3.5740 -0.8786 -1.5208 36 1 2.5342 -2.7966 0.5782 37 1 3.3494 -3.9653 2.5837 38 1 2.2676 -4.2789 5.0571 39 1 3.0933 -5.4336 7.0666 40 1 6.4535 -2.8095 7.2132 41 1 5.1916 -0.5087 4.7907 42 1 7.0759 -1.0578 3.4294 43 1 3.3554 -0.2537 4.7240 44 1 2.5353 0.8980 2.7106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419820.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:14:04 Heat of formation + Delta-G solvation = -165.982687 kcal Electronic energy + Delta-G solvation = -28981.680871 eV Core-core repulsion = 24572.453302 eV Total energy + Delta-G solvation = -4409.227569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.30790 -48.82143 -48.78075 -41.33698 -39.37136 -37.69501 -34.29617 -33.09539 -31.80828 -30.79106 -29.33421 -28.26129 -28.23438 -27.11177 -26.93187 -24.06088 -23.25776 -22.78218 -21.75798 -19.63509 -19.55228 -19.35617 -18.58937 -18.19057 -17.12264 -16.55417 -16.07645 -15.82676 -15.75896 -15.67161 -15.56326 -15.25049 -15.21102 -15.08708 -14.93195 -14.84193 -14.47139 -14.24701 -14.14369 -14.08016 -13.96559 -13.87408 -13.68727 -13.45583 -13.35469 -13.12600 -13.07939 -13.02816 -12.92734 -12.50687 -12.28589 -12.08927 -11.96510 -11.86498 -10.92446 -10.74024 -10.71756 -10.43430 -10.34763 -10.21176 -9.71784 -9.33866 -0.49285 -0.02496 0.43306 0.59225 1.03503 1.34158 1.38924 1.49852 1.80589 1.89823 2.06793 2.09210 2.21433 2.55130 2.71158 2.84258 2.97522 3.24483 3.31556 3.49461 3.57862 3.79323 3.97451 4.03533 4.15642 4.18534 4.34724 4.38754 4.58105 4.63328 4.73724 4.86163 4.87742 4.88243 4.91895 4.92445 4.93121 4.94231 4.95283 5.05483 5.14821 5.25169 5.39616 5.58900 5.61481 5.63714 5.66262 5.71262 5.75420 6.17530 6.74324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.128 2.872 3 C -0.461 4.461 4 C -0.465 4.465 5 C -0.375 4.375 6 C -0.095 4.095 7 C -0.121 4.121 8 C -0.050 4.050 9 C 0.006 3.994 10 C -0.107 4.107 11 C -0.062 4.062 12 C -0.189 4.189 13 C 0.509 3.491 14 F -0.174 7.174 15 F -0.182 7.182 16 F -0.180 7.180 17 C -0.085 4.085 18 C -0.075 4.075 19 C -0.079 4.079 20 O -0.552 6.552 21 Si 0.948 3.052 22 H -0.267 1.267 23 H -0.240 1.240 24 H -0.253 1.253 25 C -0.127 4.127 26 C -0.094 4.094 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.397 0.603 43 H 0.130 0.870 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 3.957 -4.291 6.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.568 4.568 4 C -0.572 4.572 5 C -0.414 4.414 6 C -0.113 4.113 7 C -0.139 4.139 8 C -0.050 4.050 9 C 0.006 3.994 10 C -0.124 4.124 11 C -0.080 4.080 12 C -0.191 4.191 13 C 0.455 3.545 14 F -0.155 7.155 15 F -0.163 7.163 16 F -0.162 7.162 17 C -0.103 4.103 18 C -0.075 4.075 19 C -0.189 4.189 20 O -0.361 6.361 21 Si 0.772 3.228 22 H -0.192 1.192 23 H -0.164 1.164 24 H -0.177 1.177 25 C -0.145 4.145 26 C -0.112 4.112 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.151 0.849 41 H 0.117 0.883 42 H 0.247 0.753 43 H 0.148 0.852 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.203 3.634 -3.433 5.463 hybrid contribution 0.386 -0.208 0.288 0.524 sum -1.817 3.426 -3.146 4.993 Atomic orbital electron populations 1.26316 1.21874 1.04381 1.04495 0.77139 0.64983 0.64714 0.61698 1.26262 1.06515 1.19209 1.04846 1.26316 1.06423 1.08451 1.15961 1.27921 1.02999 0.99411 1.11097 1.21265 0.96970 0.95192 0.97897 1.21365 0.99752 0.99977 0.92844 1.18681 1.00111 0.93907 0.92284 1.19100 0.92877 0.94115 0.93338 1.21515 1.00821 0.94571 0.95542 1.21232 0.93178 0.99122 0.94474 1.19949 1.00486 1.00966 0.97664 1.18354 0.75274 0.77053 0.83868 1.93177 1.68530 1.60446 1.93353 1.93221 1.42010 1.86969 1.94145 1.93217 1.96086 1.67187 1.59691 1.20830 0.99115 0.94277 0.96057 1.19403 0.95342 0.98032 0.94685 1.24786 1.01160 0.97624 0.95328 1.86481 1.67180 1.42125 1.40273 0.85729 0.78870 0.79792 0.78420 1.19209 1.16368 1.17688 1.21412 1.00389 0.93096 0.99571 1.21300 0.96866 1.00717 0.92314 0.91334 0.90893 0.91497 0.91117 0.90889 0.90756 0.91086 0.90870 0.91312 0.84637 0.86074 0.82353 0.82180 0.84916 0.88338 0.75305 0.85193 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.18 8.65 113.37 0.98 3.16 16 2 Si 1.13 -8.14 12.31 68.60 0.84 -7.30 16 3 C -0.46 2.83 8.52 113.37 0.97 3.80 16 4 C -0.46 2.37 8.52 113.37 0.97 3.34 16 5 C -0.37 1.06 4.60 22.31 0.10 1.16 16 6 C -0.10 0.09 9.28 22.24 0.21 0.30 16 7 C -0.12 -0.17 9.63 22.48 0.22 0.05 16 8 C -0.05 -0.09 4.85 -20.04 -0.10 -0.19 16 9 C 0.01 0.02 5.40 -20.04 -0.11 -0.09 16 10 C -0.11 -0.03 9.63 22.48 0.22 0.19 16 11 C -0.06 -0.06 9.42 22.24 0.21 0.15 16 12 C -0.19 -0.82 5.38 -19.82 -0.11 -0.92 16 13 C 0.51 2.90 3.31 71.24 0.24 3.13 16 14 F -0.17 -0.87 15.96 44.97 0.72 -0.15 16 15 F -0.18 -1.42 17.23 44.97 0.78 -0.64 16 16 F -0.18 -1.26 17.23 44.97 0.78 -0.48 16 17 C -0.08 -0.40 8.20 22.24 0.18 -0.22 16 18 C -0.07 -0.26 5.30 -19.65 -0.10 -0.36 16 19 C -0.08 0.01 2.07 71.24 0.15 0.16 16 20 O -0.55 -0.34 12.80 -148.98 -1.91 -2.25 16 21 Si 0.95 -0.05 25.48 68.60 1.75 1.70 16 22 H -0.27 -0.99 6.75 99.48 0.67 -0.32 16 23 H -0.24 0.35 7.11 99.48 0.71 1.06 16 24 H -0.25 -0.35 7.11 99.48 0.71 0.36 16 25 C -0.13 0.05 7.95 22.48 0.18 0.23 16 26 C -0.09 0.23 9.28 22.24 0.21 0.43 16 27 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 29 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 30 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 31 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 32 H 0.07 -0.51 7.67 -2.39 -0.02 -0.52 16 33 H 0.07 -0.37 7.67 -2.39 -0.02 -0.39 16 34 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 35 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 36 H 0.14 -0.61 7.40 -2.91 -0.02 -0.63 16 37 H 0.12 0.02 8.06 -2.91 -0.02 0.00 16 38 H 0.16 -0.61 8.06 -2.91 -0.02 -0.63 16 39 H 0.16 -0.46 7.14 -2.91 -0.02 -0.48 16 40 H 0.13 0.54 4.88 -2.91 -0.01 0.52 16 41 H 0.10 -0.35 4.95 -2.38 -0.01 -0.36 16 42 H 0.40 -3.16 8.74 -74.06 -0.65 -3.80 16 43 H 0.13 -0.41 7.02 -2.91 -0.02 -0.43 16 44 H 0.14 -0.98 7.40 -2.91 -0.02 -1.00 16 Total: 0.00 -12.44 376.68 8.46 -3.98 By element: Atomic # 1 Polarization: -10.29 SS G_CDS: 1.11 Total: -9.17 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.40 Total: 14.32 kcal Atomic # 8 Polarization: -0.34 SS G_CDS: -1.91 Total: -2.25 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 2.27 Total: -1.27 kcal Atomic # 14 Polarization: -8.19 SS G_CDS: 2.59 Total: -5.60 kcal Total: -12.44 8.46 -3.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419820.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.002 kcal (2) G-P(sol) polarization free energy of solvation -12.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds