Wall clock time and date at job start Mon Mar 8 2021 09:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86289 * 109.47375 * 2 1 4 4 C 1.86303 * 109.46929 * 239.99735 * 2 1 3 5 5 C 1.86804 * 109.46818 * 120.00087 * 2 1 3 6 6 C 1.38327 * 119.87681 * 90.00233 * 5 2 1 7 7 C 1.38016 * 120.11856 * 180.02562 * 6 5 2 8 8 C 1.39337 * 119.87617 * 359.96580 * 7 6 5 9 9 C 1.48394 * 120.11918 * 179.97438 * 8 7 6 10 10 C 1.39321 * 120.12149 * 0.02562 * 9 8 7 11 11 C 1.38043 * 119.87797 * 180.25836 * 10 9 8 12 12 C 1.38301 * 120.11839 * 359.43864 * 11 10 9 13 13 C 1.50703 * 119.87603 * 180.25845 * 12 11 10 14 14 O 1.42903 * 109.46484 * 105.29995 * 13 12 11 15 15 Si 1.86298 * 109.47113 * 345.30507 * 13 12 11 16 16 H 1.48506 * 109.47294 * 59.99472 * 15 13 12 17 17 H 1.48497 * 109.47028 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46859 * 299.99679 * 15 13 12 19 19 C 1.38343 * 120.24329 * 0.56387 * 12 11 10 20 20 C 1.50703 * 119.93782 * 179.74084 * 19 12 11 21 21 F 1.39893 * 109.47399 * 179.97438 * 20 19 12 22 22 F 1.39899 * 109.47127 * 299.98101 * 20 19 12 23 23 F 1.39901 * 109.46957 * 59.97817 * 20 19 12 24 24 C 1.37993 * 120.12209 * 359.71611 * 19 12 11 25 25 C 1.39336 * 119.76385 * 0.26540 * 8 7 6 26 26 C 1.38022 * 119.87171 * 359.52535 * 25 8 7 27 27 H 1.09003 * 109.46760 * 300.00448 * 1 2 3 28 28 H 1.08996 * 109.47283 * 59.99660 * 1 2 3 29 29 H 1.08992 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47659 * 180.02562 * 3 2 1 31 31 H 1.09010 * 109.47282 * 299.99797 * 3 2 1 32 32 H 1.09003 * 109.47542 * 60.00032 * 3 2 1 33 33 H 1.09004 * 109.46794 * 300.00252 * 4 2 1 34 34 H 1.09001 * 109.47043 * 59.99972 * 4 2 1 35 35 H 1.08999 * 109.46876 * 180.02562 * 4 2 1 36 36 H 1.07993 * 119.94194 * 359.97438 * 6 5 2 37 37 H 1.07995 * 120.06239 * 179.97438 * 7 6 5 38 38 H 1.08002 * 120.05673 * 359.97438 * 10 9 8 39 39 H 1.08004 * 119.93623 * 179.72472 * 11 10 9 40 40 H 1.08993 * 109.47193 * 225.30182 * 13 12 11 41 41 H 0.96701 * 114.00400 * 299.99572 * 14 13 12 42 42 H 1.08008 * 120.05969 * 180.02562 * 24 19 12 43 43 H 1.08000 * 120.06451 * 179.72688 * 25 8 7 44 44 H 1.08006 * 119.93763 * 180.21235 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7563 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7153 -2.2442 1.4881 7 6 3.1748 -2.9000 2.6123 8 6 3.4079 -2.1858 3.7857 9 6 3.9014 -2.8855 4.9977 10 6 4.1338 -4.2588 4.9663 11 6 4.5878 -4.9056 6.0982 12 6 4.8230 -4.1908 7.2586 13 6 5.3241 -4.9015 8.4895 14 8 6.7099 -4.6078 8.6778 15 14 5.1017 -6.7391 8.2793 16 1 5.8707 -7.1986 7.0948 17 1 5.5961 -7.4394 9.4919 18 1 3.6617 -7.0443 8.0834 19 6 4.5939 -2.8270 7.2954 20 6 4.8469 -2.0559 8.5653 21 9 4.5462 -0.7054 8.3586 22 9 4.0377 -2.5627 9.5877 23 9 6.1919 -2.1838 8.9283 24 6 4.1346 -2.1713 6.1714 25 6 3.1703 -0.8132 3.8189 26 6 2.7149 -0.1669 2.6876 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1208 2.2702 -0.8901 32 1 2.1208 2.2702 0.8900 33 1 2.1205 -1.9060 -1.5210 34 1 2.1206 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5340 -2.7968 0.5782 37 1 3.3534 -3.9646 2.5824 38 1 3.9547 -4.8171 4.0593 39 1 4.7640 -5.9709 6.0761 40 1 4.7597 -4.5642 9.3588 41 1 7.2736 -4.8811 7.9412 42 1 3.9565 -1.1064 6.2012 43 1 3.3451 -0.2557 4.7272 44 1 2.5336 0.8976 2.7112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:14:12 Heat of formation + Delta-G solvation = -177.260301 kcal Electronic energy + Delta-G solvation = -28918.207332 eV Core-core repulsion = 24508.490729 eV Total energy + Delta-G solvation = -4409.716603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.01444 -48.57916 -48.36514 -41.31016 -39.71096 -37.68091 -34.22046 -33.27784 -31.92759 -30.70261 -29.54037 -28.51175 -28.45649 -27.57584 -26.36823 -24.20361 -23.66151 -22.64504 -21.78442 -19.53755 -19.32199 -19.27582 -18.19735 -17.87422 -17.07120 -16.67327 -16.38403 -16.10776 -15.72171 -15.43396 -15.26761 -15.11397 -15.03539 -14.87985 -14.63497 -14.57572 -14.55099 -14.54673 -14.41938 -14.24192 -14.04192 -13.92141 -13.77493 -13.48910 -13.48541 -13.29775 -13.25079 -13.14825 -12.88725 -12.78766 -12.25396 -12.14056 -11.95904 -11.65209 -11.24624 -10.95478 -10.91591 -10.65420 -10.54541 -10.42383 -9.89726 -9.14422 -0.64298 -0.16556 0.46476 0.58031 0.99259 1.30242 1.42860 1.64701 1.73625 1.79646 1.81404 1.86993 2.26985 2.49091 2.77371 2.97609 3.03650 3.27359 3.39845 3.44544 3.58101 3.65339 3.82050 3.94783 3.99511 4.04727 4.26150 4.38183 4.43999 4.54031 4.60472 4.65520 4.66332 4.69449 4.70645 4.71476 4.72342 4.82462 4.89764 4.97087 5.00551 5.10046 5.31454 5.39927 5.45347 5.49620 5.52611 5.55434 5.58183 6.01205 6.45378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.365 4.365 6 C -0.086 4.086 7 C -0.117 4.117 8 C -0.044 4.044 9 C -0.037 4.037 10 C -0.074 4.074 11 C -0.124 4.124 12 C -0.070 4.070 13 C -0.106 4.106 14 O -0.523 6.523 15 Si 0.957 3.043 16 H -0.248 1.248 17 H -0.248 1.248 18 H -0.246 1.246 19 C -0.153 4.153 20 C 0.507 3.493 21 F -0.180 7.180 22 F -0.176 7.176 23 F -0.157 7.157 24 C -0.065 4.065 25 C -0.118 4.118 26 C -0.085 4.085 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.376 0.624 42 H 0.144 0.856 43 H 0.123 0.877 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -1.430 -4.767 5.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.406 4.406 6 C -0.104 4.104 7 C -0.135 4.135 8 C -0.044 4.044 9 C -0.037 4.037 10 C -0.092 4.092 11 C -0.142 4.142 12 C -0.071 4.071 13 C -0.216 4.216 14 O -0.328 6.328 15 Si 0.778 3.222 16 H -0.172 1.172 17 H -0.171 1.171 18 H -0.169 1.169 19 C -0.154 4.154 20 C 0.453 3.547 21 F -0.161 7.161 22 F -0.158 7.158 23 F -0.138 7.138 24 C -0.083 4.083 25 C -0.136 4.136 26 C -0.103 4.103 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.223 0.777 42 H 0.162 0.838 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.528 -2.091 -4.193 4.928 hybrid contribution 0.300 0.397 -0.068 0.502 sum -1.228 -1.694 -4.261 4.747 Atomic orbital electron populations 1.26127 1.20434 1.04593 1.04540 0.78182 0.66876 0.66139 0.63654 1.26142 1.06488 1.18550 1.04618 1.26138 1.06472 1.08038 1.15097 1.27497 1.03320 0.99519 1.10284 1.21031 0.97047 0.94629 0.97673 1.21285 0.99901 0.99729 0.92618 1.18666 0.99971 0.93480 0.92298 1.18795 0.99055 0.93178 0.92711 1.21427 0.95720 0.93570 0.98505 1.21081 1.00478 1.00377 0.92243 1.20156 0.97738 0.92643 0.96553 1.25350 0.86194 1.11955 0.98105 1.86650 1.14721 1.85311 1.46077 0.85571 0.81855 0.73488 0.81308 1.17231 1.17106 1.16932 1.19752 1.07512 0.94378 0.93767 1.18196 0.75182 0.77121 0.84178 1.93167 1.93151 1.34906 1.94899 1.93177 1.73515 1.86798 1.62272 1.93311 1.32563 1.95431 1.92516 1.21144 0.95509 1.00882 0.90799 1.21331 0.99719 0.93546 0.98974 1.21042 0.96941 0.99830 0.92468 0.91151 0.91001 0.91168 0.91034 0.90917 0.91145 0.91175 0.90911 0.91040 0.85785 0.85880 0.84261 0.84470 0.85778 0.77695 0.83825 0.85907 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.88 8.65 101.05 0.87 1.75 16 2 Si 1.06 -3.26 12.31 -169.99 -2.09 -5.35 16 3 C -0.45 1.00 8.52 101.05 0.86 1.86 16 4 C -0.45 1.07 8.52 101.05 0.86 1.93 16 5 C -0.36 0.34 4.60 -39.52 -0.18 0.16 16 6 C -0.09 0.06 9.28 -39.63 -0.37 -0.31 16 7 C -0.12 0.02 9.43 -39.25 -0.37 -0.35 16 8 C -0.04 -0.03 5.88 -104.90 -0.62 -0.65 16 9 C -0.04 -0.02 5.88 -104.90 -0.62 -0.63 16 10 C -0.07 0.06 9.43 -39.25 -0.37 -0.31 16 11 C -0.12 0.10 8.64 -39.63 -0.34 -0.24 16 12 C -0.07 -0.03 5.24 -104.56 -0.55 -0.58 16 13 C -0.11 -0.01 2.01 36.01 0.07 0.07 16 14 O -0.52 -0.29 10.85 -35.23 -0.38 -0.68 16 15 Si 0.96 -1.05 25.47 -169.99 -4.33 -5.38 16 16 H -0.25 0.45 6.74 56.52 0.38 0.83 16 17 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 18 H -0.25 0.14 7.11 56.52 0.40 0.54 16 19 C -0.15 -0.24 5.37 -104.67 -0.56 -0.80 16 20 C 0.51 1.36 2.87 36.01 0.10 1.47 16 21 F -0.18 -0.50 15.97 2.25 0.04 -0.46 16 22 F -0.18 -0.54 15.40 2.25 0.03 -0.50 16 23 F -0.16 -0.59 14.88 2.25 0.03 -0.56 16 24 C -0.07 -0.06 8.81 -39.25 -0.35 -0.41 16 25 C -0.12 -0.05 9.43 -39.25 -0.37 -0.42 16 26 C -0.08 0.03 9.28 -39.63 -0.37 -0.34 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.16 7.96 -51.92 -0.41 -0.58 16 32 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 33 H 0.07 -0.18 7.67 -51.93 -0.40 -0.58 16 34 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 35 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.12 -0.33 7.40 -52.49 -0.39 -0.72 16 37 H 0.12 -0.27 6.21 -52.49 -0.33 -0.60 16 38 H 0.14 -0.42 6.21 -52.49 -0.33 -0.74 16 39 H 0.14 -0.36 4.86 -52.48 -0.26 -0.61 16 40 H 0.12 0.06 5.98 -51.93 -0.31 -0.25 16 41 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 42 H 0.14 -0.02 5.30 -52.48 -0.28 -0.29 16 43 H 0.12 -0.11 6.21 -52.49 -0.33 -0.43 16 44 H 0.12 -0.27 7.40 -52.48 -0.39 -0.66 16 LS Contribution 367.00 15.07 5.53 5.53 Total: 0.00 -5.45 367.00 -8.16 -13.61 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: -4.71 Total: -8.41 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.28 Total: 2.20 kcal Atomic # 8 Polarization: -0.29 SS G_CDS: -0.38 Total: -0.68 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.10 Total: -1.53 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: -6.42 Total: -10.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -5.45 -8.16 -13.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.650 kcal (2) G-P(sol) polarization free energy of solvation -5.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds