Wall clock time and date at job start Mon Mar 8 2021 09:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86289 * 109.47375 * 2 1 4 4 C 1.86303 * 109.46929 * 239.99735 * 2 1 3 5 5 C 1.86804 * 109.46818 * 120.00087 * 2 1 3 6 6 C 1.38327 * 119.87681 * 90.00233 * 5 2 1 7 7 C 1.38016 * 120.11856 * 180.02562 * 6 5 2 8 8 C 1.39337 * 119.87617 * 359.96580 * 7 6 5 9 9 C 1.48394 * 120.11918 * 179.97438 * 8 7 6 10 10 C 1.39321 * 120.12149 * 0.02562 * 9 8 7 11 11 C 1.38043 * 119.87797 * 180.25836 * 10 9 8 12 12 C 1.38301 * 120.11839 * 359.43864 * 11 10 9 13 13 C 1.50703 * 119.87603 * 180.25845 * 12 11 10 14 14 O 1.42903 * 109.46484 * 105.29995 * 13 12 11 15 15 Si 1.86298 * 109.47113 * 345.30507 * 13 12 11 16 16 H 1.48506 * 109.47294 * 59.99472 * 15 13 12 17 17 H 1.48497 * 109.47028 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46859 * 299.99679 * 15 13 12 19 19 C 1.38343 * 120.24329 * 0.56387 * 12 11 10 20 20 C 1.50703 * 119.93782 * 179.74084 * 19 12 11 21 21 F 1.39893 * 109.47399 * 179.97438 * 20 19 12 22 22 F 1.39899 * 109.47127 * 299.98101 * 20 19 12 23 23 F 1.39901 * 109.46957 * 59.97817 * 20 19 12 24 24 C 1.37993 * 120.12209 * 359.71611 * 19 12 11 25 25 C 1.39336 * 119.76385 * 0.26540 * 8 7 6 26 26 C 1.38022 * 119.87171 * 359.52535 * 25 8 7 27 27 H 1.09003 * 109.46760 * 300.00448 * 1 2 3 28 28 H 1.08996 * 109.47283 * 59.99660 * 1 2 3 29 29 H 1.08992 * 109.47433 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47659 * 180.02562 * 3 2 1 31 31 H 1.09010 * 109.47282 * 299.99797 * 3 2 1 32 32 H 1.09003 * 109.47542 * 60.00032 * 3 2 1 33 33 H 1.09004 * 109.46794 * 300.00252 * 4 2 1 34 34 H 1.09001 * 109.47043 * 59.99972 * 4 2 1 35 35 H 1.08999 * 109.46876 * 180.02562 * 4 2 1 36 36 H 1.07993 * 119.94194 * 359.97438 * 6 5 2 37 37 H 1.07995 * 120.06239 * 179.97438 * 7 6 5 38 38 H 1.08002 * 120.05673 * 359.97438 * 10 9 8 39 39 H 1.08004 * 119.93623 * 179.72472 * 11 10 9 40 40 H 1.08993 * 109.47193 * 225.30182 * 13 12 11 41 41 H 0.96701 * 114.00400 * 299.99572 * 14 13 12 42 42 H 1.08008 * 120.05969 * 180.02562 * 24 19 12 43 43 H 1.08000 * 120.06451 * 179.72688 * 25 8 7 44 44 H 1.08006 * 119.93763 * 180.21235 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7563 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7153 -2.2442 1.4881 7 6 3.1748 -2.9000 2.6123 8 6 3.4079 -2.1858 3.7857 9 6 3.9014 -2.8855 4.9977 10 6 4.1338 -4.2588 4.9663 11 6 4.5878 -4.9056 6.0982 12 6 4.8230 -4.1908 7.2586 13 6 5.3241 -4.9015 8.4895 14 8 6.7099 -4.6078 8.6778 15 14 5.1017 -6.7391 8.2793 16 1 5.8707 -7.1986 7.0948 17 1 5.5961 -7.4394 9.4919 18 1 3.6617 -7.0443 8.0834 19 6 4.5939 -2.8270 7.2954 20 6 4.8469 -2.0559 8.5653 21 9 4.5462 -0.7054 8.3586 22 9 4.0377 -2.5627 9.5877 23 9 6.1919 -2.1838 8.9283 24 6 4.1346 -2.1713 6.1714 25 6 3.1703 -0.8132 3.8189 26 6 2.7149 -0.1669 2.6876 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7564 -0.0005 31 1 2.1208 2.2702 -0.8901 32 1 2.1208 2.2702 0.8900 33 1 2.1205 -1.9060 -1.5210 34 1 2.1206 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5340 -2.7968 0.5782 37 1 3.3534 -3.9646 2.5824 38 1 3.9547 -4.8171 4.0593 39 1 4.7640 -5.9709 6.0761 40 1 4.7597 -4.5642 9.3588 41 1 7.2736 -4.8811 7.9412 42 1 3.9565 -1.1064 6.2012 43 1 3.3451 -0.2557 4.7272 44 1 2.5336 0.8976 2.7112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:14:11 Heat of formation + Delta-G solvation = -166.141261 kcal Electronic energy + Delta-G solvation = -28917.725174 eV Core-core repulsion = 24508.490729 eV Total energy + Delta-G solvation = -4409.234445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.24832 -48.81282 -48.62133 -41.26954 -39.63516 -37.65814 -34.18406 -33.25617 -31.84251 -30.63502 -29.35067 -28.30790 -28.26226 -27.63219 -26.36517 -24.20001 -23.61103 -22.59511 -21.78926 -19.57782 -19.53981 -19.49047 -18.19217 -17.83061 -17.03353 -16.67343 -16.35303 -16.07330 -15.69333 -15.49717 -15.42499 -15.16106 -15.10055 -15.06816 -14.82691 -14.70126 -14.56229 -14.46015 -14.42560 -14.04928 -13.86625 -13.78919 -13.66956 -13.46569 -13.37845 -13.10752 -13.10135 -12.96425 -12.82562 -12.74650 -12.18824 -12.08542 -11.86722 -11.58279 -11.12126 -10.77849 -10.74671 -10.56451 -10.50457 -10.39327 -9.82466 -9.09066 -0.60538 -0.15892 0.53751 0.64284 1.06308 1.40834 1.51665 1.57583 1.85517 1.89246 2.03449 2.05112 2.33670 2.61611 2.67775 2.91266 3.04383 3.26933 3.34170 3.50373 3.56077 3.67237 3.91098 4.02471 4.07625 4.12368 4.30160 4.47274 4.50733 4.62940 4.66119 4.84466 4.85014 4.86561 4.89132 4.89560 4.91320 4.92631 4.97606 5.01217 5.08246 5.19178 5.39159 5.57061 5.59362 5.61123 5.63935 5.68607 5.72315 6.11718 6.64808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.127 2.873 3 C -0.465 4.465 4 C -0.461 4.461 5 C -0.376 4.376 6 C -0.097 4.097 7 C -0.126 4.126 8 C -0.060 4.060 9 C -0.045 4.045 10 C -0.072 4.072 11 C -0.122 4.122 12 C -0.076 4.076 13 C -0.115 4.115 14 O -0.541 6.541 15 Si 0.995 3.005 16 H -0.228 1.228 17 H -0.274 1.274 18 H -0.251 1.251 19 C -0.167 4.167 20 C 0.504 3.496 21 F -0.184 7.184 22 F -0.181 7.181 23 F -0.166 7.166 24 C -0.075 4.075 25 C -0.136 4.136 26 C -0.099 4.099 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.112 0.888 41 H 0.390 0.610 42 H 0.145 0.855 43 H 0.125 0.875 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.365 -2.529 -6.382 6.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.572 4.572 4 C -0.568 4.568 5 C -0.416 4.416 6 C -0.115 4.115 7 C -0.144 4.144 8 C -0.060 4.060 9 C -0.045 4.045 10 C -0.089 4.089 11 C -0.139 4.139 12 C -0.076 4.076 13 C -0.223 4.223 14 O -0.348 6.348 15 Si 0.815 3.185 16 H -0.150 1.150 17 H -0.199 1.199 18 H -0.175 1.175 19 C -0.168 4.168 20 C 0.450 3.550 21 F -0.165 7.165 22 F -0.163 7.163 23 F -0.147 7.147 24 C -0.093 4.093 25 C -0.154 4.154 26 C -0.117 4.117 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.177 0.823 40 H 0.130 0.870 41 H 0.239 0.761 42 H 0.162 0.838 43 H 0.143 0.857 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.660 -3.174 -5.816 6.831 hybrid contribution 0.335 0.789 0.454 0.970 sum -1.324 -2.385 -5.362 6.016 Atomic orbital electron populations 1.26306 1.21778 1.04494 1.04446 0.77149 0.65049 0.64487 0.61866 1.26320 1.06409 1.19719 1.04744 1.26257 1.06441 1.08564 1.15535 1.28013 1.02745 0.99876 1.10956 1.21381 0.96753 0.94951 0.98380 1.21583 0.99610 1.00805 0.92380 1.18816 1.00656 0.93710 0.92786 1.18922 0.99211 0.93892 0.92446 1.21745 0.94578 0.93139 0.99437 1.21317 0.99725 1.01315 0.91549 1.20300 0.97790 0.92279 0.97264 1.25531 0.85853 1.13372 0.97571 1.86610 1.15221 1.85723 1.47205 0.85046 0.81379 0.71265 0.80780 1.15048 1.19871 1.17510 1.19747 1.08907 0.94948 0.93225 1.18412 0.74712 0.77143 0.84705 1.93150 1.93140 1.35285 1.94927 1.93161 1.73591 1.86850 1.62672 1.93283 1.33268 1.95480 1.92691 1.21219 0.95878 1.01149 0.91030 1.21538 1.00323 0.93983 0.99551 1.21311 0.97075 1.00689 0.92598 0.91588 0.90777 0.91274 0.91334 0.90764 0.91095 0.90666 0.90774 0.91224 0.83815 0.83969 0.81767 0.82316 0.87027 0.76068 0.83787 0.85710 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.99 8.65 113.37 0.98 2.97 16 2 Si 1.13 -7.62 12.31 68.60 0.84 -6.78 16 3 C -0.47 2.16 8.52 113.37 0.97 3.13 16 4 C -0.46 2.65 8.52 113.37 0.97 3.62 16 5 C -0.38 0.83 4.60 22.31 0.10 0.93 16 6 C -0.10 0.22 9.28 22.24 0.21 0.42 16 7 C -0.13 0.15 9.43 22.48 0.21 0.36 16 8 C -0.06 -0.09 5.88 -20.04 -0.12 -0.21 16 9 C -0.04 -0.05 5.88 -20.04 -0.12 -0.17 16 10 C -0.07 0.19 9.43 22.48 0.21 0.40 16 11 C -0.12 0.32 8.64 22.24 0.19 0.51 16 12 C -0.08 -0.09 5.24 -19.82 -0.10 -0.20 16 13 C -0.11 -0.08 2.01 71.24 0.14 0.06 16 14 O -0.54 -0.99 10.85 -148.98 -1.62 -2.60 16 15 Si 0.99 -2.77 25.47 68.60 1.75 -1.02 16 16 H -0.23 1.40 6.74 99.48 0.67 2.07 16 17 H -0.27 -0.39 7.11 99.48 0.71 0.32 16 18 H -0.25 0.49 7.11 99.48 0.71 1.20 16 19 C -0.17 -0.72 5.37 -19.90 -0.11 -0.82 16 20 C 0.50 3.60 2.87 71.24 0.20 3.81 16 21 F -0.18 -1.37 15.97 44.97 0.72 -0.66 16 22 F -0.18 -1.45 15.40 44.97 0.69 -0.76 16 23 F -0.17 -1.55 14.88 44.97 0.67 -0.88 16 24 C -0.07 -0.23 8.81 22.48 0.20 -0.03 16 25 C -0.14 -0.24 9.43 22.48 0.21 -0.03 16 26 C -0.10 0.02 9.28 22.24 0.21 0.23 16 27 H 0.06 -0.22 7.96 -2.39 -0.02 -0.23 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 31 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 32 H 0.07 -0.33 7.67 -2.39 -0.02 -0.35 16 33 H 0.07 -0.50 7.67 -2.39 -0.02 -0.51 16 34 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 35 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.14 -0.99 7.40 -2.91 -0.02 -1.02 16 37 H 0.14 -0.88 6.21 -2.91 -0.02 -0.89 16 38 H 0.16 -1.35 6.21 -2.91 -0.02 -1.37 16 39 H 0.16 -1.18 4.86 -2.91 -0.01 -1.20 16 40 H 0.11 0.29 5.98 -2.39 -0.01 0.28 16 41 H 0.39 -2.26 8.70 -74.06 -0.64 -2.91 16 42 H 0.14 0.26 5.30 -2.91 -0.02 0.24 16 43 H 0.13 0.00 6.21 -2.91 -0.02 -0.02 16 44 H 0.14 -0.53 7.40 -2.91 -0.02 -0.55 16 Total: 0.00 -13.32 367.00 8.54 -4.77 By element: Atomic # 1 Polarization: -8.21 SS G_CDS: 1.13 Total: -7.08 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 4.36 Total: 14.99 kcal Atomic # 8 Polarization: -0.99 SS G_CDS: -1.62 Total: -2.60 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 2.08 Total: -2.29 kcal Atomic # 14 Polarization: -10.39 SS G_CDS: 2.59 Total: -7.79 kcal Total: -13.32 8.54 -4.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.367 kcal (2) G-P(sol) polarization free energy of solvation -13.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds