Wall clock time and date at job start Mon Mar 8 2021 09:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86299 * 109.47546 * 2 1 4 4 C 1.86297 * 109.47255 * 239.99865 * 2 1 3 5 5 C 1.86799 * 109.46818 * 120.00077 * 2 1 3 6 6 C 1.38323 * 119.87820 * 89.99952 * 5 2 1 7 7 C 1.38018 * 120.12334 * 180.02562 * 6 5 2 8 8 C 1.39358 * 119.87623 * 359.97438 * 7 6 5 9 9 C 1.48360 * 120.12062 * 179.97438 * 8 7 6 10 10 C 1.39457 * 120.24203 * 0.03105 * 9 8 7 11 11 C 1.37516 * 119.88004 * 179.97438 * 10 9 8 12 12 C 1.39011 * 120.90010 * 0.35210 * 11 10 9 13 13 O 1.36157 * 111.18562 * 178.94147 * 12 11 10 14 14 C 1.43860 * 109.26239 * 19.07658 * 13 12 11 15 15 C 1.51668 * 132.06924 * 180.39524 * 11 10 9 16 16 C 1.39417 * 119.07694 * 359.49358 * 12 11 10 17 17 C 1.50698 * 119.79706 * 180.31584 * 16 12 11 18 18 O 1.42903 * 109.47376 * 285.00164 * 17 16 12 19 19 Si 1.86299 * 109.47144 * 164.99768 * 17 16 12 20 20 H 1.48501 * 109.47019 * 60.00145 * 19 17 16 21 21 H 1.48499 * 109.47355 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47425 * 300.00376 * 19 17 16 23 23 C 1.37667 * 120.40273 * 0.33849 * 16 12 11 24 24 C 1.39351 * 119.75181 * 0.25551 * 8 7 6 25 25 C 1.38010 * 119.87706 * 359.49241 * 24 8 7 26 26 H 1.08995 * 109.47156 * 300.00623 * 1 2 3 27 27 H 1.09003 * 109.46720 * 60.00081 * 1 2 3 28 28 H 1.08991 * 109.47418 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47444 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46939 * 300.00482 * 3 2 1 31 31 H 1.09008 * 109.46803 * 59.99751 * 3 2 1 32 32 H 1.09003 * 109.46831 * 300.00236 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99804 * 4 2 1 34 34 H 1.08997 * 109.47633 * 180.02562 * 4 2 1 35 35 H 1.07999 * 119.93922 * 359.97438 * 6 5 2 36 36 H 1.07995 * 120.06109 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.05630 * 359.96251 * 10 9 8 38 38 H 1.08992 * 110.78079 * 213.86180 * 14 13 12 39 39 H 1.09002 * 110.75616 * 90.48208 * 14 13 12 40 40 H 1.09002 * 110.93977 * 282.72020 * 15 11 10 41 41 H 1.08997 * 110.93940 * 46.37310 * 15 11 10 42 42 H 1.09004 * 109.47410 * 45.00348 * 17 16 12 43 43 H 0.96701 * 113.99133 * 299.99745 * 18 17 16 44 44 H 1.08002 * 119.89441 * 179.97438 * 23 16 12 45 45 H 1.08005 * 120.05824 * 179.72488 * 24 8 7 46 46 H 1.08007 * 119.94056 * 180.25668 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7152 -2.2441 1.4881 7 6 3.1747 -2.9000 2.6123 8 6 3.4078 -2.1858 3.7860 9 6 3.9012 -2.8854 4.9977 10 6 4.1348 -4.2599 4.9689 11 6 4.5926 -4.9008 6.0962 12 6 4.8210 -4.1982 7.2737 13 8 5.2474 -5.0269 8.2664 14 6 5.7465 -6.2450 7.6861 15 6 4.9405 -6.3515 6.3699 16 6 4.5896 -2.8236 7.2982 17 6 4.8387 -2.0447 8.5641 18 8 3.7888 -2.3050 9.4979 19 14 4.8854 -0.2237 8.1737 20 1 3.5860 0.1899 7.5856 21 1 5.1302 0.5439 9.4211 22 1 5.9763 0.0468 7.2033 23 6 4.1345 -2.1735 6.1733 24 6 3.1701 -0.8131 3.8190 25 6 2.7156 -0.1667 2.6875 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5741 1.7564 0.0005 30 1 2.1207 2.2702 -0.8899 31 1 2.1207 2.2703 0.8900 32 1 2.1206 -1.9059 -1.5210 33 1 2.1207 -0.3645 -2.4111 34 1 3.5740 -0.8787 -1.5209 35 1 2.5338 -2.7967 0.5781 36 1 3.3533 -3.9647 2.5823 37 1 3.9564 -4.8201 4.0629 38 1 5.5398 -7.0956 8.3353 39 1 6.8139 -6.1656 7.4798 40 1 4.0394 -6.9480 6.5122 41 1 5.5550 -6.7625 5.5690 42 1 5.7925 -2.3482 8.9958 43 1 2.9095 -2.0587 9.1797 44 1 3.9576 -1.1084 6.2016 45 1 3.3448 -0.2555 4.7273 46 1 2.5351 0.8979 2.7107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:02 Heat of formation + Delta-G solvation = -59.929529 kcal Electronic energy + Delta-G solvation = -25104.244697 eV Core-core repulsion = 21661.069533 eV Total energy + Delta-G solvation = -3443.175164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22117 -40.23414 -38.68959 -37.39882 -33.93142 -33.21100 -32.02168 -30.63686 -29.76410 -29.17422 -28.46348 -28.42085 -26.82501 -24.52128 -24.20813 -23.29230 -21.72535 -21.53891 -18.95800 -18.21883 -17.79760 -17.42382 -17.02677 -16.40757 -16.00773 -15.78444 -15.52083 -15.39496 -14.82712 -14.50044 -14.42442 -14.30574 -14.19942 -14.16884 -14.06139 -13.87825 -13.83153 -13.51971 -13.40470 -13.27901 -13.19386 -13.11865 -12.91053 -12.86210 -12.50840 -12.18297 -12.13118 -11.96085 -11.69599 -11.59006 -11.03610 -10.91577 -10.83435 -10.33663 -10.06079 -9.88843 -9.80359 -8.62672 -0.32930 0.16082 0.55733 0.82055 1.13859 1.38532 1.51380 1.71133 1.84032 1.90194 1.94269 2.25451 2.53532 2.54047 3.10753 3.31388 3.44135 3.48726 3.62582 3.79324 3.92562 3.98600 4.03325 4.13176 4.13956 4.28120 4.44926 4.48564 4.57408 4.63082 4.68496 4.69188 4.69970 4.70613 4.72890 4.74121 4.75017 4.75728 4.94949 4.96898 5.05638 5.14553 5.23263 5.32696 5.39952 5.43536 5.49845 5.52818 5.58473 5.63407 5.74725 6.10981 6.14729 6.61818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.371 4.371 6 C -0.083 4.083 7 C -0.124 4.124 8 C -0.028 4.028 9 C -0.070 4.070 10 C -0.052 4.052 11 C -0.173 4.173 12 C 0.140 3.860 13 O -0.292 6.292 14 C 0.048 3.952 15 C -0.111 4.111 16 C -0.137 4.137 17 C -0.073 4.073 18 O -0.534 6.534 19 Si 0.942 3.058 20 H -0.250 1.250 21 H -0.249 1.249 22 H -0.246 1.246 23 C -0.084 4.084 24 C -0.127 4.127 25 C -0.083 4.083 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.374 0.626 44 H 0.134 0.866 45 H 0.118 0.882 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -0.725 -3.306 3.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.413 4.413 6 C -0.101 4.101 7 C -0.142 4.142 8 C -0.028 4.028 9 C -0.070 4.070 10 C -0.070 4.070 11 C -0.173 4.173 12 C 0.094 3.906 13 O -0.205 6.205 14 C -0.027 4.027 15 C -0.148 4.148 16 C -0.138 4.138 17 C -0.183 4.183 18 O -0.338 6.338 19 Si 0.764 3.236 20 H -0.174 1.174 21 H -0.173 1.173 22 H -0.169 1.169 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.101 4.101 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.134 0.866 43 H 0.220 0.780 44 H 0.151 0.849 45 H 0.136 0.864 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.460 -0.072 -2.819 2.857 hybrid contribution -0.341 -0.645 -0.231 0.765 sum 0.119 -0.717 -3.050 3.135 Atomic orbital electron populations 1.26125 1.20494 1.04566 1.04468 0.78182 0.66865 0.66133 0.63779 1.26137 1.06463 1.18589 1.04548 1.26134 1.06456 1.08036 1.15079 1.27418 1.04138 0.99512 1.10208 1.21012 0.96922 0.94603 0.97600 1.21273 1.00468 0.99698 0.92713 1.18660 0.98622 0.93241 0.92323 1.18513 1.02641 0.92813 0.93010 1.20376 0.96452 0.93134 0.97068 1.20756 1.06011 0.95670 0.94897 1.19372 0.93732 0.90544 0.86999 1.86951 1.76379 1.27173 1.29999 1.23931 0.98515 0.86174 0.94046 1.21831 1.01425 0.93259 0.98251 1.19395 1.06770 0.90670 0.96935 1.24897 0.94656 1.09439 0.89349 1.86565 1.17847 1.87895 1.41532 0.85843 0.81764 0.74951 0.81042 1.17390 1.17289 1.16930 1.20903 0.98001 0.99807 0.91482 1.21267 1.00714 0.93677 0.98804 1.21007 0.96932 0.99665 0.92519 0.91176 0.91070 0.91179 0.91055 0.90969 0.91187 0.91188 0.90972 0.91059 0.85966 0.86051 0.85098 0.87214 0.90203 0.88819 0.88743 0.86572 0.77954 0.84887 0.86366 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.67 8.65 101.05 0.87 1.54 16 2 Si 1.06 -2.66 12.31 -169.99 -2.09 -4.75 16 3 C -0.45 0.81 8.52 101.05 0.86 1.67 16 4 C -0.45 0.84 8.52 101.05 0.86 1.70 16 5 C -0.37 0.05 4.60 -39.52 -0.18 -0.13 16 6 C -0.08 -0.02 9.28 -39.63 -0.37 -0.39 16 7 C -0.12 -0.13 9.43 -39.25 -0.37 -0.50 16 8 C -0.03 -0.06 5.88 -104.90 -0.62 -0.67 16 9 C -0.07 -0.14 5.88 -104.84 -0.62 -0.76 16 10 C -0.05 -0.07 9.42 -39.39 -0.37 -0.44 16 11 C -0.17 -0.29 6.26 -104.12 -0.65 -0.94 16 12 C 0.14 0.43 6.76 -38.86 -0.26 0.17 16 13 O -0.29 -0.97 11.05 -20.24 -0.22 -1.20 16 14 C 0.05 -0.02 8.01 38.05 0.30 0.28 16 15 C -0.11 0.09 7.11 -26.51 -0.19 -0.09 16 16 C -0.14 -0.33 5.28 -104.39 -0.55 -0.88 16 17 C -0.07 -0.11 2.75 36.00 0.10 -0.01 16 18 O -0.53 -1.24 12.88 -35.23 -0.45 -1.69 16 19 Si 0.94 0.37 25.48 -169.99 -4.33 -3.96 16 20 H -0.25 0.05 6.72 56.52 0.38 0.43 16 21 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 22 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 23 C -0.08 -0.15 8.02 -39.36 -0.32 -0.47 16 24 C -0.13 -0.18 9.43 -39.25 -0.37 -0.55 16 25 C -0.08 -0.04 9.28 -39.63 -0.37 -0.41 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.14 7.67 -51.92 -0.40 -0.53 16 32 H 0.07 -0.14 7.67 -51.93 -0.40 -0.54 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.12 -0.22 7.40 -52.49 -0.39 -0.60 16 36 H 0.12 -0.09 6.22 -52.49 -0.33 -0.41 16 37 H 0.13 -0.08 6.22 -52.49 -0.33 -0.41 16 38 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 39 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 40 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 41 H 0.09 -0.23 8.14 -51.93 -0.42 -0.66 16 42 H 0.12 0.17 7.96 -51.93 -0.41 -0.25 16 43 H 0.37 -0.43 8.70 45.56 0.40 -0.03 16 44 H 0.13 0.06 2.99 -52.49 -0.16 -0.10 16 45 H 0.12 0.02 6.22 -52.48 -0.33 -0.31 16 46 H 0.12 -0.19 7.40 -52.48 -0.39 -0.57 16 LS Contribution 372.49 15.07 5.61 5.61 Total: 0.00 -6.29 372.49 -9.85 -16.14 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: -6.13 Total: -9.26 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.23 Total: -0.88 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: -0.68 Total: -2.89 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: -6.42 Total: -8.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -6.29 -9.85 -16.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.791 kcal (2) G-P(sol) polarization free energy of solvation -6.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds