Wall clock time and date at job start Mon Mar 8 2021 09:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86299 * 109.47546 * 2 1 4 4 C 1.86297 * 109.47255 * 239.99865 * 2 1 3 5 5 C 1.86799 * 109.46818 * 120.00077 * 2 1 3 6 6 C 1.38323 * 119.87820 * 89.99952 * 5 2 1 7 7 C 1.38018 * 120.12334 * 180.02562 * 6 5 2 8 8 C 1.39358 * 119.87623 * 359.97438 * 7 6 5 9 9 C 1.48360 * 120.12062 * 179.97438 * 8 7 6 10 10 C 1.39457 * 120.24203 * 0.03105 * 9 8 7 11 11 C 1.37516 * 119.88004 * 179.97438 * 10 9 8 12 12 C 1.39011 * 120.90010 * 0.35210 * 11 10 9 13 13 O 1.36157 * 111.18562 * 178.94147 * 12 11 10 14 14 C 1.43860 * 109.26239 * 19.07658 * 13 12 11 15 15 C 1.51668 * 132.06924 * 180.39524 * 11 10 9 16 16 C 1.39417 * 119.07694 * 359.49358 * 12 11 10 17 17 C 1.50698 * 119.79706 * 180.31584 * 16 12 11 18 18 O 1.42903 * 109.47376 * 285.00164 * 17 16 12 19 19 Si 1.86299 * 109.47144 * 164.99768 * 17 16 12 20 20 H 1.48501 * 109.47019 * 60.00145 * 19 17 16 21 21 H 1.48499 * 109.47355 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47425 * 300.00376 * 19 17 16 23 23 C 1.37667 * 120.40273 * 0.33849 * 16 12 11 24 24 C 1.39351 * 119.75181 * 0.25551 * 8 7 6 25 25 C 1.38010 * 119.87706 * 359.49241 * 24 8 7 26 26 H 1.08995 * 109.47156 * 300.00623 * 1 2 3 27 27 H 1.09003 * 109.46720 * 60.00081 * 1 2 3 28 28 H 1.08991 * 109.47418 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47444 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46939 * 300.00482 * 3 2 1 31 31 H 1.09008 * 109.46803 * 59.99751 * 3 2 1 32 32 H 1.09003 * 109.46831 * 300.00236 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99804 * 4 2 1 34 34 H 1.08997 * 109.47633 * 180.02562 * 4 2 1 35 35 H 1.07999 * 119.93922 * 359.97438 * 6 5 2 36 36 H 1.07995 * 120.06109 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.05630 * 359.96251 * 10 9 8 38 38 H 1.08992 * 110.78079 * 213.86180 * 14 13 12 39 39 H 1.09002 * 110.75616 * 90.48208 * 14 13 12 40 40 H 1.09002 * 110.93977 * 282.72020 * 15 11 10 41 41 H 1.08997 * 110.93940 * 46.37310 * 15 11 10 42 42 H 1.09004 * 109.47410 * 45.00348 * 17 16 12 43 43 H 0.96701 * 113.99133 * 299.99745 * 18 17 16 44 44 H 1.08002 * 119.89441 * 179.97438 * 23 16 12 45 45 H 1.08005 * 120.05824 * 179.72488 * 24 8 7 46 46 H 1.08007 * 119.94056 * 180.25668 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5252 6 6 2.7152 -2.2441 1.4881 7 6 3.1747 -2.9000 2.6123 8 6 3.4078 -2.1858 3.7860 9 6 3.9012 -2.8854 4.9977 10 6 4.1348 -4.2599 4.9689 11 6 4.5926 -4.9008 6.0962 12 6 4.8210 -4.1982 7.2737 13 8 5.2474 -5.0269 8.2664 14 6 5.7465 -6.2450 7.6861 15 6 4.9405 -6.3515 6.3699 16 6 4.5896 -2.8236 7.2982 17 6 4.8387 -2.0447 8.5641 18 8 3.7888 -2.3050 9.4979 19 14 4.8854 -0.2237 8.1737 20 1 3.5860 0.1899 7.5856 21 1 5.1302 0.5439 9.4211 22 1 5.9763 0.0468 7.2033 23 6 4.1345 -2.1735 6.1733 24 6 3.1701 -0.8131 3.8190 25 6 2.7156 -0.1667 2.6875 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5741 1.7564 0.0005 30 1 2.1207 2.2702 -0.8899 31 1 2.1207 2.2703 0.8900 32 1 2.1206 -1.9059 -1.5210 33 1 2.1207 -0.3645 -2.4111 34 1 3.5740 -0.8787 -1.5209 35 1 2.5338 -2.7967 0.5781 36 1 3.3533 -3.9647 2.5823 37 1 3.9564 -4.8201 4.0629 38 1 5.5398 -7.0956 8.3353 39 1 6.8139 -6.1656 7.4798 40 1 4.0394 -6.9480 6.5122 41 1 5.5550 -6.7625 5.5690 42 1 5.7925 -2.3482 8.9958 43 1 2.9095 -2.0587 9.1797 44 1 3.9576 -1.1084 6.2016 45 1 3.3448 -0.2555 4.7273 46 1 2.5351 0.8979 2.7107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419828.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:01 Heat of formation + Delta-G solvation = -50.902016 kcal Electronic energy + Delta-G solvation = -25103.853235 eV Core-core repulsion = 21661.069533 eV Total energy + Delta-G solvation = -3442.783702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28255 -40.24867 -38.76228 -37.49845 -33.98324 -33.25493 -32.00767 -30.64031 -29.68666 -29.12277 -28.29003 -28.25847 -26.91497 -24.51652 -24.25463 -23.28278 -21.75985 -21.59426 -19.03357 -18.27449 -17.82756 -17.47806 -17.06625 -16.46524 -16.06726 -15.81430 -15.54901 -15.40458 -14.85936 -14.51708 -14.47764 -14.30626 -14.14855 -14.04558 -13.98540 -13.78043 -13.71282 -13.48383 -13.33789 -13.11308 -13.09663 -12.97820 -12.92612 -12.81830 -12.48918 -12.26319 -12.14912 -11.95219 -11.75837 -11.62326 -10.91027 -10.76208 -10.74286 -10.43764 -10.11238 -9.92908 -9.81451 -8.70071 -0.39550 0.07249 0.54723 0.77265 1.06781 1.34349 1.45525 1.82502 1.86695 2.04245 2.08506 2.23775 2.48613 2.68541 3.08597 3.31229 3.39616 3.45727 3.61318 3.78839 3.91903 4.02990 4.06823 4.10975 4.15728 4.27361 4.44023 4.52029 4.58246 4.64454 4.77527 4.79727 4.85443 4.85670 4.88964 4.89733 4.90197 4.91208 4.95080 4.95263 5.01621 5.13568 5.19788 5.25668 5.37115 5.54211 5.60552 5.60991 5.68863 5.69676 5.73023 6.06389 6.14351 6.63884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.461 4.461 5 C -0.382 4.382 6 C -0.094 4.094 7 C -0.135 4.135 8 C -0.047 4.047 9 C -0.076 4.076 10 C -0.059 4.059 11 C -0.178 4.178 12 C 0.114 3.886 13 O -0.318 6.318 14 C 0.041 3.959 15 C -0.106 4.106 16 C -0.145 4.145 17 C -0.079 4.079 18 O -0.552 6.552 19 Si 0.977 3.023 20 H -0.238 1.238 21 H -0.266 1.266 22 H -0.253 1.253 23 C -0.093 4.093 24 C -0.143 4.143 25 C -0.095 4.095 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.387 0.613 44 H 0.143 0.857 45 H 0.124 0.876 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -0.865 -4.590 4.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.568 4.568 5 C -0.421 4.421 6 C -0.112 4.112 7 C -0.152 4.152 8 C -0.047 4.047 9 C -0.077 4.077 10 C -0.077 4.077 11 C -0.179 4.179 12 C 0.068 3.932 13 O -0.232 6.232 14 C -0.033 4.033 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.188 4.188 18 O -0.359 6.359 19 Si 0.799 3.201 20 H -0.162 1.162 21 H -0.191 1.191 22 H -0.177 1.177 23 C -0.110 4.110 24 C -0.161 4.161 25 C -0.113 4.113 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.235 0.765 44 H 0.160 0.840 45 H 0.142 0.858 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.101 -0.230 -4.099 4.106 hybrid contribution -0.240 -0.620 0.155 0.683 sum -0.139 -0.851 -3.944 4.037 Atomic orbital electron populations 1.26295 1.21715 1.04442 1.04490 0.77168 0.65120 0.64622 0.61764 1.26288 1.06406 1.19486 1.04817 1.26265 1.06411 1.08512 1.15652 1.28012 1.03313 0.99714 1.11094 1.21349 0.96641 0.95066 0.98135 1.21529 1.00453 1.00511 0.92740 1.18806 0.99562 0.93669 0.92657 1.18713 1.02442 0.93316 0.93189 1.20603 0.96266 0.93108 0.97690 1.21083 1.05365 0.96971 0.94437 1.19670 0.94790 0.91074 0.87645 1.86904 1.76796 1.28410 1.31071 1.24195 0.99062 0.85459 0.94585 1.21898 1.01984 0.91849 0.98547 1.19551 1.06908 0.90862 0.97326 1.25046 0.94221 1.10594 0.88951 1.86515 1.18870 1.88250 1.42229 0.85345 0.81903 0.73112 0.79778 1.16168 1.19092 1.17682 1.21026 0.98250 1.00329 0.91409 1.21499 1.01164 0.93857 0.99603 1.21319 0.96815 1.00701 0.92484 0.91494 0.90734 0.91392 0.91312 0.90707 0.90970 0.90825 0.90719 0.91280 0.84065 0.84813 0.83355 0.85540 0.89346 0.88081 0.86847 0.87280 0.76476 0.83996 0.85801 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.70 8.65 113.37 0.98 2.68 16 2 Si 1.13 -6.67 12.31 68.60 0.84 -5.83 16 3 C -0.46 2.03 8.52 113.37 0.97 2.99 16 4 C -0.46 2.20 8.52 113.37 0.97 3.17 16 5 C -0.38 0.30 4.60 22.31 0.10 0.40 16 6 C -0.09 0.00 9.28 22.24 0.21 0.21 16 7 C -0.13 -0.27 9.43 22.49 0.21 -0.06 16 8 C -0.05 -0.21 5.88 -20.04 -0.12 -0.33 16 9 C -0.08 -0.38 5.88 -20.01 -0.12 -0.49 16 10 C -0.06 -0.18 9.42 22.39 0.21 0.03 16 11 C -0.18 -0.70 6.26 -19.54 -0.12 -0.82 16 12 C 0.11 0.86 6.76 22.74 0.15 1.02 16 13 O -0.32 -2.54 11.05 -95.34 -1.05 -3.60 16 14 C 0.04 -0.03 8.01 72.56 0.58 0.55 16 15 C -0.11 0.21 7.11 30.74 0.22 0.43 16 16 C -0.15 -0.91 5.28 -19.72 -0.10 -1.01 16 17 C -0.08 -0.37 2.75 71.24 0.20 -0.17 16 18 O -0.55 -3.36 12.88 -148.98 -1.92 -5.28 16 19 Si 0.98 1.52 25.48 68.60 1.75 3.27 16 20 H -0.24 0.14 6.72 99.48 0.67 0.80 16 21 H -0.27 -1.10 7.11 99.48 0.71 -0.40 16 22 H -0.25 -0.63 7.11 99.48 0.71 0.07 16 23 C -0.09 -0.44 8.02 22.42 0.18 -0.26 16 24 C -0.14 -0.49 9.43 22.48 0.21 -0.27 16 25 C -0.10 -0.08 9.28 22.24 0.21 0.12 16 26 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 27 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 31 H 0.07 -0.34 7.67 -2.38 -0.02 -0.36 16 32 H 0.07 -0.39 7.67 -2.39 -0.02 -0.41 16 33 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 34 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 35 H 0.14 -0.66 7.40 -2.91 -0.02 -0.68 16 36 H 0.13 -0.23 6.22 -2.91 -0.02 -0.25 16 37 H 0.15 -0.22 6.22 -2.91 -0.02 -0.24 16 38 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.10 -0.36 8.14 -2.39 -0.02 -0.37 16 41 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H 0.11 0.56 7.96 -2.38 -0.02 0.54 16 43 H 0.39 -0.40 8.70 -74.06 -0.64 -1.05 16 44 H 0.14 0.25 2.99 -2.91 -0.01 0.24 16 45 H 0.12 0.12 6.22 -2.91 -0.02 0.10 16 46 H 0.14 -0.49 7.40 -2.91 -0.02 -0.51 16 Total: 0.00 -15.10 372.49 5.62 -9.48 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: 1.07 Total: -6.21 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 4.93 Total: 8.17 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -2.97 Total: -8.88 kcal Atomic # 14 Polarization: -5.15 SS G_CDS: 2.59 Total: -2.56 kcal Total: -15.10 5.62 -9.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419828.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.423 kcal (2) G-P(sol) polarization free energy of solvation -15.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds