Wall clock time and date at job start Mon Mar 8 2021 09:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86295 * 109.47180 * 2 1 4 4 C 1.86302 * 109.46634 * 240.00084 * 2 1 3 5 5 C 1.86801 * 109.47073 * 120.00446 * 2 1 3 6 6 C 1.38339 * 119.86726 * 89.99875 * 5 2 1 7 7 C 1.37981 * 120.13414 * 179.97438 * 6 5 2 8 8 C 1.39468 * 119.86273 * 0.02562 * 7 6 5 9 9 C 1.48141 * 120.13172 * 180.02562 * 8 7 6 10 10 C 1.41400 * 120.37218 * 129.99803 * 9 8 7 11 11 C 1.40473 * 121.35093 * 359.95789 * 10 9 8 12 12 C 1.36692 * 118.17430 * 180.02562 * 11 10 9 13 13 C 1.39274 * 119.88959 * 0.28247 * 12 11 10 14 14 N 1.31096 * 121.72393 * 359.42560 * 13 12 11 15 15 C 1.33729 * 121.32404 * 0.55875 * 14 13 12 16 16 C 1.40590 * 120.96572 * 179.68393 * 15 14 13 17 17 C 1.50695 * 119.92583 * 0.02562 * 16 15 14 18 18 O 1.42907 * 109.47274 * 285.00683 * 17 16 15 19 19 Si 1.86295 * 109.47383 * 165.00327 * 17 16 15 20 20 H 1.48503 * 109.47279 * 60.00025 * 19 17 16 21 21 H 1.48503 * 109.47368 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47171 * 300.00341 * 19 17 16 23 23 C 1.36203 * 120.15193 * 180.02562 * 16 15 14 24 24 C 1.38418 * 120.36973 * 309.97312 * 9 8 7 25 25 C 1.39468 * 119.73672 * 0.27144 * 8 7 6 26 26 C 1.37982 * 119.85896 * 359.47347 * 25 8 7 27 27 H 1.09003 * 109.46915 * 299.99989 * 1 2 3 28 28 H 1.08994 * 109.47300 * 59.99554 * 1 2 3 29 29 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47062 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47157 * 300.00492 * 3 2 1 32 32 H 1.09003 * 109.47188 * 60.00178 * 3 2 1 33 33 H 1.08998 * 109.47471 * 299.99825 * 4 2 1 34 34 H 1.08994 * 109.46981 * 60.00167 * 4 2 1 35 35 H 1.09001 * 109.46455 * 179.97438 * 4 2 1 36 36 H 1.07997 * 119.93172 * 359.97438 * 6 5 2 37 37 H 1.08001 * 120.07125 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.91015 * 0.02562 * 11 10 9 39 39 H 1.08002 * 120.05073 * 179.97438 * 12 11 10 40 40 H 1.08009 * 119.13755 * 179.71697 * 13 12 11 41 41 H 1.08997 * 109.47034 * 45.00119 * 17 16 15 42 42 H 0.96698 * 113.99903 * 299.99803 * 18 17 16 43 43 H 1.08001 * 119.38938 * 180.02562 * 23 16 15 44 44 H 1.08000 * 119.71490 * 0.02562 * 24 9 8 45 45 H 1.07997 * 120.06614 * 179.70939 * 25 8 7 46 46 H 1.08006 * 119.93411 * 180.22958 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7153 -2.2444 1.4877 7 6 3.1758 -2.9004 2.6109 8 6 3.4091 -2.1859 3.7857 9 6 3.9040 -2.8841 4.9949 10 6 5.0234 -2.3856 5.7005 11 6 5.6945 -1.2252 5.2806 12 6 6.7695 -0.8013 6.0109 13 6 7.1730 -1.5203 7.1334 14 7 6.5402 -2.5998 7.5247 15 6 5.4814 -3.0665 6.8543 16 6 4.8125 -4.2286 7.2770 17 6 5.2875 -4.9658 8.5024 18 8 6.4809 -5.6877 8.1914 19 14 3.9686 -6.1573 9.0605 20 1 3.6893 -7.1309 7.9745 21 1 4.4364 -6.8834 10.2685 22 1 2.7284 -5.4072 9.3838 23 6 3.7361 -4.6896 6.5814 24 6 3.2755 -4.0315 5.4470 25 6 3.1699 -0.8123 3.8190 26 6 2.7145 -0.1666 2.6878 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1208 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4111 35 1 3.5739 -0.8778 -1.5214 36 1 2.5338 -2.7966 0.5776 37 1 3.3551 -3.9650 2.5805 38 1 5.3701 -0.6829 4.4048 39 1 7.3080 0.0869 5.7151 40 1 8.0268 -1.1771 7.6989 41 1 5.4925 -4.2513 9.2996 42 1 6.3724 -6.3429 7.4885 43 1 3.2311 -5.5833 6.9173 44 1 2.4199 -4.4187 4.9137 45 1 3.3443 -0.2546 4.7273 46 1 2.5323 0.8977 2.7112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:11 Heat of formation + Delta-G solvation = 1.345796 kcal Electronic energy + Delta-G solvation = -25857.148497 eV Core-core repulsion = 22413.434430 eV Total energy + Delta-G solvation = -3443.714067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07446 -39.96550 -38.61509 -37.28708 -34.86822 -32.52291 -32.05134 -31.46855 -30.46680 -29.52917 -28.49527 -28.45917 -26.62927 -25.12092 -24.78367 -23.40840 -23.16960 -21.31568 -19.41581 -18.51843 -18.14202 -17.61821 -16.97143 -16.24332 -16.16464 -15.84063 -15.71638 -15.55360 -15.10036 -14.81963 -14.60694 -14.53202 -14.36297 -14.26989 -14.18414 -14.02753 -13.89980 -13.70492 -13.49790 -13.31833 -13.29317 -13.15293 -12.90491 -12.71032 -12.57440 -12.15095 -12.10285 -11.99925 -11.65894 -11.45134 -11.07210 -10.95846 -10.92166 -10.48072 -10.20304 -9.90029 -9.86666 -9.78434 -8.91550 -0.80483 -0.16848 0.18772 0.47031 0.98633 1.16832 1.40825 1.53128 1.65210 1.79535 1.82340 1.92742 1.94609 2.49136 2.83264 3.08539 3.29278 3.34967 3.62051 3.71663 3.78778 3.80308 3.94643 3.99156 4.04969 4.06928 4.26003 4.37899 4.44484 4.55343 4.61940 4.65188 4.66189 4.69410 4.70154 4.71250 4.71831 4.78979 4.83184 4.88505 5.00528 5.06118 5.08102 5.18738 5.32568 5.34981 5.39895 5.45292 5.49245 5.52153 5.56252 5.60415 5.80955 6.03181 6.67224 7.00166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.366 4.366 6 C -0.086 4.086 7 C -0.113 4.113 8 C -0.043 4.043 9 C -0.019 4.019 10 C -0.090 4.090 11 C -0.061 4.061 12 C -0.173 4.173 13 C 0.133 3.867 14 N -0.459 5.459 15 C 0.148 3.852 16 C -0.091 4.091 17 C -0.069 4.069 18 O -0.527 6.527 19 Si 0.945 3.055 20 H -0.251 1.251 21 H -0.250 1.250 22 H -0.249 1.249 23 C -0.107 4.107 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.087 4.087 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.161 0.839 41 H 0.121 0.879 42 H 0.370 0.630 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 1.662 -3.440 4.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.407 4.407 6 C -0.104 4.104 7 C -0.131 4.131 8 C -0.043 4.043 9 C -0.020 4.020 10 C -0.092 4.092 11 C -0.087 4.087 12 C -0.193 4.193 13 C -0.039 4.039 14 N -0.166 5.166 15 C 0.027 3.973 16 C -0.092 4.092 17 C -0.179 4.179 18 O -0.331 6.331 19 Si 0.767 3.233 20 H -0.175 1.175 21 H -0.174 1.174 22 H -0.172 1.172 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.137 4.137 26 C -0.105 4.105 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.179 0.821 41 H 0.139 0.861 42 H 0.216 0.784 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.041 0.891 -1.870 2.909 hybrid contribution -0.086 0.457 -1.219 1.304 sum -2.127 1.348 -3.089 3.986 Atomic orbital electron populations 1.26127 1.20453 1.04592 1.04513 0.78186 0.66887 0.66123 0.63704 1.26137 1.06457 1.18556 1.04601 1.26139 1.06467 1.08058 1.15101 1.27473 1.03513 0.99493 1.10241 1.21034 0.97009 0.94619 0.97696 1.21320 0.99598 0.99722 0.92458 1.18707 0.99678 0.93440 0.92455 1.18822 0.94187 0.94893 0.94076 1.18743 0.96976 0.96978 0.96548 1.21635 0.93937 0.94149 0.98974 1.22000 0.98181 1.01988 0.97120 1.23077 0.97571 0.89790 0.93497 1.68150 1.06158 1.12269 1.29996 1.18506 0.92955 0.94465 0.91420 1.20066 0.95605 0.95173 0.98359 1.24935 0.95869 0.99957 0.97158 1.86603 1.32462 1.54687 1.59339 0.85827 0.77364 0.79074 0.81019 1.17511 1.17375 1.17207 1.20813 0.96140 1.00090 0.95558 1.21163 0.99983 0.94477 0.96311 1.21352 1.00109 0.93383 0.98834 1.21031 0.97153 0.99768 0.92511 0.91167 0.91021 0.91164 0.91051 0.90919 0.91171 0.91165 0.90931 0.91053 0.85828 0.85973 0.83989 0.84299 0.82144 0.86119 0.78370 0.85035 0.84821 0.86067 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.86 8.65 101.05 0.87 1.73 16 2 Si 1.06 -3.23 12.30 -169.99 -2.09 -5.32 16 3 C -0.45 1.04 8.52 101.05 0.86 1.91 16 4 C -0.45 1.01 8.52 101.05 0.86 1.88 16 5 C -0.37 0.33 4.60 -39.50 -0.18 0.15 16 6 C -0.09 0.03 9.28 -39.64 -0.37 -0.33 16 7 C -0.11 -0.05 9.51 -39.22 -0.37 -0.43 16 8 C -0.04 -0.05 5.05 -104.91 -0.53 -0.58 16 9 C -0.02 -0.03 5.50 -104.56 -0.57 -0.61 16 10 C -0.09 -0.25 5.74 -106.58 -0.61 -0.86 16 11 C -0.06 -0.08 8.68 -39.30 -0.34 -0.42 16 12 C -0.17 -0.06 10.03 -39.76 -0.40 -0.46 16 13 C 0.13 0.21 11.14 -17.48 -0.19 0.02 16 14 N -0.46 -1.89 9.67 -11.00 -0.11 -2.00 16 15 C 0.15 0.56 6.58 -84.88 -0.56 0.00 16 16 C -0.09 -0.22 5.28 -104.47 -0.55 -0.77 16 17 C -0.07 -0.11 2.38 36.00 0.09 -0.03 16 18 O -0.53 -1.24 12.88 -35.23 -0.45 -1.69 16 19 Si 0.94 0.16 25.48 -169.99 -4.33 -4.17 16 20 H -0.25 0.12 6.73 56.52 0.38 0.50 16 21 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 22 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 23 C -0.11 -0.10 8.59 -40.03 -0.34 -0.44 16 24 C -0.10 -0.09 9.48 -39.23 -0.37 -0.46 16 25 C -0.12 -0.06 7.63 -39.22 -0.30 -0.36 16 26 C -0.09 0.04 9.28 -39.63 -0.37 -0.33 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 32 H 0.07 -0.17 7.67 -51.93 -0.40 -0.57 16 33 H 0.07 -0.17 7.67 -51.93 -0.40 -0.57 16 34 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.12 -0.28 7.40 -52.49 -0.39 -0.67 16 37 H 0.12 -0.08 8.04 -52.49 -0.42 -0.50 16 38 H 0.14 0.00 5.70 -52.49 -0.30 -0.30 16 39 H 0.14 -0.33 8.06 -52.49 -0.42 -0.75 16 40 H 0.16 -0.18 8.06 -52.48 -0.42 -0.61 16 41 H 0.12 0.26 7.83 -51.93 -0.41 -0.15 16 42 H 0.37 -0.45 8.70 45.56 0.40 -0.05 16 43 H 0.13 -0.13 4.76 -52.49 -0.25 -0.38 16 44 H 0.13 -0.14 8.03 -52.49 -0.42 -0.56 16 45 H 0.12 -0.01 7.29 -52.49 -0.38 -0.39 16 46 H 0.12 -0.28 7.40 -52.48 -0.39 -0.67 16 LS Contribution 378.07 15.07 5.70 5.70 Total: 0.00 -6.62 378.07 -10.58 -17.21 By element: Atomic # 1 Polarization: -3.40 SS G_CDS: -5.92 Total: -9.32 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.38 Total: -0.40 kcal Atomic # 7 Polarization: -1.89 SS G_CDS: -0.11 Total: -2.00 kcal Atomic # 8 Polarization: -1.24 SS G_CDS: -0.45 Total: -1.69 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: -6.42 Total: -9.50 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -6.62 -10.58 -17.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.553 kcal (2) G-P(sol) polarization free energy of solvation -6.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds