Wall clock time and date at job start Mon Mar 8 2021 09:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86295 * 109.47180 * 2 1 4 4 C 1.86302 * 109.46634 * 240.00084 * 2 1 3 5 5 C 1.86801 * 109.47073 * 120.00446 * 2 1 3 6 6 C 1.38339 * 119.86726 * 89.99875 * 5 2 1 7 7 C 1.37981 * 120.13414 * 179.97438 * 6 5 2 8 8 C 1.39468 * 119.86273 * 0.02562 * 7 6 5 9 9 C 1.48141 * 120.13172 * 180.02562 * 8 7 6 10 10 C 1.41400 * 120.37218 * 129.99803 * 9 8 7 11 11 C 1.40473 * 121.35093 * 359.95789 * 10 9 8 12 12 C 1.36692 * 118.17430 * 180.02562 * 11 10 9 13 13 C 1.39274 * 119.88959 * 0.28247 * 12 11 10 14 14 N 1.31096 * 121.72393 * 359.42560 * 13 12 11 15 15 C 1.33729 * 121.32404 * 0.55875 * 14 13 12 16 16 C 1.40590 * 120.96572 * 179.68393 * 15 14 13 17 17 C 1.50695 * 119.92583 * 0.02562 * 16 15 14 18 18 O 1.42907 * 109.47274 * 285.00683 * 17 16 15 19 19 Si 1.86295 * 109.47383 * 165.00327 * 17 16 15 20 20 H 1.48503 * 109.47279 * 60.00025 * 19 17 16 21 21 H 1.48503 * 109.47368 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47171 * 300.00341 * 19 17 16 23 23 C 1.36203 * 120.15193 * 180.02562 * 16 15 14 24 24 C 1.38418 * 120.36973 * 309.97312 * 9 8 7 25 25 C 1.39468 * 119.73672 * 0.27144 * 8 7 6 26 26 C 1.37982 * 119.85896 * 359.47347 * 25 8 7 27 27 H 1.09003 * 109.46915 * 299.99989 * 1 2 3 28 28 H 1.08994 * 109.47300 * 59.99554 * 1 2 3 29 29 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47062 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47157 * 300.00492 * 3 2 1 32 32 H 1.09003 * 109.47188 * 60.00178 * 3 2 1 33 33 H 1.08998 * 109.47471 * 299.99825 * 4 2 1 34 34 H 1.08994 * 109.46981 * 60.00167 * 4 2 1 35 35 H 1.09001 * 109.46455 * 179.97438 * 4 2 1 36 36 H 1.07997 * 119.93172 * 359.97438 * 6 5 2 37 37 H 1.08001 * 120.07125 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.91015 * 0.02562 * 11 10 9 39 39 H 1.08002 * 120.05073 * 179.97438 * 12 11 10 40 40 H 1.08009 * 119.13755 * 179.71697 * 13 12 11 41 41 H 1.08997 * 109.47034 * 45.00119 * 17 16 15 42 42 H 0.96698 * 113.99903 * 299.99803 * 18 17 16 43 43 H 1.08001 * 119.38938 * 180.02562 * 23 16 15 44 44 H 1.08000 * 119.71490 * 0.02562 * 24 9 8 45 45 H 1.07997 * 120.06614 * 179.70939 * 25 8 7 46 46 H 1.08006 * 119.93411 * 180.22958 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7153 -2.2444 1.4877 7 6 3.1758 -2.9004 2.6109 8 6 3.4091 -2.1859 3.7857 9 6 3.9040 -2.8841 4.9949 10 6 5.0234 -2.3856 5.7005 11 6 5.6945 -1.2252 5.2806 12 6 6.7695 -0.8013 6.0109 13 6 7.1730 -1.5203 7.1334 14 7 6.5402 -2.5998 7.5247 15 6 5.4814 -3.0665 6.8543 16 6 4.8125 -4.2286 7.2770 17 6 5.2875 -4.9658 8.5024 18 8 6.4809 -5.6877 8.1914 19 14 3.9686 -6.1573 9.0605 20 1 3.6893 -7.1309 7.9745 21 1 4.4364 -6.8834 10.2685 22 1 2.7284 -5.4072 9.3838 23 6 3.7361 -4.6896 6.5814 24 6 3.2755 -4.0315 5.4470 25 6 3.1699 -0.8123 3.8190 26 6 2.7145 -0.1666 2.6878 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1208 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1206 -0.3644 -2.4111 35 1 3.5739 -0.8778 -1.5214 36 1 2.5338 -2.7966 0.5776 37 1 3.3551 -3.9650 2.5805 38 1 5.3701 -0.6829 4.4048 39 1 7.3080 0.0869 5.7151 40 1 8.0268 -1.1771 7.6989 41 1 5.4925 -4.2513 9.2996 42 1 6.3724 -6.3429 7.4885 43 1 3.2311 -5.5833 6.9173 44 1 2.4199 -4.4187 4.9137 45 1 3.3443 -0.2546 4.7273 46 1 2.5323 0.8977 2.7112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:09 Heat of formation + Delta-G solvation = 10.550365 kcal Electronic energy + Delta-G solvation = -25856.749357 eV Core-core repulsion = 22413.434430 eV Total energy + Delta-G solvation = -3443.314927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.14228 -39.93588 -38.69648 -37.36643 -34.93278 -32.55384 -32.03583 -31.50354 -30.47261 -29.34349 -28.28188 -28.26094 -26.68839 -25.20561 -24.84496 -23.39814 -23.14356 -21.36313 -19.45462 -18.59473 -18.18184 -17.65056 -17.00244 -16.32041 -16.14884 -15.84001 -15.75205 -15.57918 -15.15453 -14.90587 -14.60996 -14.50226 -14.32455 -14.19230 -14.02933 -13.89473 -13.72631 -13.68324 -13.42856 -13.14670 -13.10379 -12.95736 -12.84734 -12.76327 -12.59832 -12.18893 -12.17125 -11.95156 -11.69747 -11.53377 -10.90598 -10.81958 -10.74736 -10.57817 -10.29331 -9.89668 -9.86447 -9.82230 -8.96744 -0.86864 -0.25555 0.20506 0.51095 0.90732 1.11955 1.39699 1.50265 1.80530 1.85195 1.88040 2.03625 2.11443 2.67608 2.86652 3.00236 3.24020 3.30818 3.58610 3.69169 3.75336 3.77549 3.92824 3.97524 4.07185 4.11017 4.28142 4.36772 4.51343 4.52278 4.63420 4.74729 4.80039 4.85400 4.85529 4.87513 4.89543 4.90316 4.91004 4.91999 4.97300 5.02289 5.12374 5.15292 5.28562 5.35678 5.50778 5.57768 5.60498 5.60904 5.68876 5.72002 5.75772 6.09895 6.71242 6.89812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.129 2.871 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.375 4.375 6 C -0.095 4.095 7 C -0.124 4.124 8 C -0.055 4.055 9 C -0.026 4.026 10 C -0.106 4.106 11 C -0.069 4.069 12 C -0.170 4.170 13 C 0.124 3.876 14 N -0.491 5.491 15 C 0.123 3.877 16 C -0.107 4.107 17 C -0.075 4.075 18 O -0.547 6.547 19 Si 0.988 3.012 20 H -0.233 1.233 21 H -0.272 1.272 22 H -0.256 1.256 23 C -0.104 4.104 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.095 4.095 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.183 0.817 41 H 0.105 0.895 42 H 0.384 0.616 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.121 0.879 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 1.908 -4.688 5.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.316 2.684 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.414 4.414 6 C -0.112 4.112 7 C -0.142 4.142 8 C -0.055 4.055 9 C -0.027 4.027 10 C -0.108 4.108 11 C -0.094 4.094 12 C -0.189 4.189 13 C -0.048 4.048 14 N -0.199 5.199 15 C 0.002 3.998 16 C -0.108 4.108 17 C -0.184 4.184 18 O -0.353 6.353 19 Si 0.810 3.190 20 H -0.157 1.157 21 H -0.197 1.197 22 H -0.180 1.180 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.147 4.147 26 C -0.112 4.112 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.170 0.830 39 H 0.186 0.814 40 H 0.200 0.800 41 H 0.123 0.877 42 H 0.232 0.768 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.139 0.861 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.661 1.133 -3.132 4.264 hybrid contribution 0.140 0.441 -0.852 0.969 sum -2.521 1.573 -3.984 4.971 Atomic orbital electron populations 1.26310 1.21794 1.04452 1.04498 0.77135 0.65037 0.64611 0.61657 1.26286 1.06476 1.19397 1.04841 1.26291 1.06425 1.08516 1.15788 1.28015 1.02767 0.99579 1.11078 1.21335 0.96691 0.95098 0.98100 1.21500 0.99856 1.00237 0.92602 1.18768 1.00473 0.93812 0.92495 1.19000 0.94036 0.95284 0.94355 1.18956 0.97617 0.97634 0.96629 1.21842 0.94194 0.93941 0.99450 1.22294 0.97820 1.02513 0.96284 1.23556 0.97895 0.89315 0.94075 1.68141 1.07041 1.13633 1.31078 1.18817 0.93477 0.95372 0.92162 1.20235 0.96302 0.95317 0.98980 1.25115 0.96307 1.00349 0.96647 1.86548 1.33372 1.55291 1.60084 0.85213 0.75660 0.77971 0.80167 1.15658 1.19695 1.17965 1.21022 0.95546 1.00481 0.95234 1.21435 1.00361 0.94233 0.96332 1.21458 1.00560 0.93341 0.99335 1.21316 0.96822 1.00754 0.92342 0.91456 0.90789 0.91386 0.91198 0.90769 0.90904 0.90884 0.90771 0.91282 0.84101 0.85325 0.82991 0.81432 0.80040 0.87698 0.76822 0.83147 0.82976 0.86098 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.11 8.65 113.37 0.98 3.09 16 2 Si 1.13 -7.97 12.30 68.60 0.84 -7.13 16 3 C -0.46 2.58 8.52 113.37 0.97 3.54 16 4 C -0.46 2.52 8.52 113.37 0.97 3.49 16 5 C -0.37 0.92 4.60 22.32 0.10 1.02 16 6 C -0.09 0.12 9.28 22.23 0.21 0.33 16 7 C -0.12 -0.13 9.51 22.51 0.21 0.08 16 8 C -0.06 -0.16 5.05 -20.05 -0.10 -0.26 16 9 C -0.03 -0.12 5.50 -19.83 -0.11 -0.23 16 10 C -0.11 -0.74 5.74 -21.13 -0.12 -0.86 16 11 C -0.07 -0.24 8.68 22.45 0.19 -0.04 16 12 C -0.17 -0.17 10.03 22.16 0.22 0.05 16 13 C 0.12 0.51 11.14 85.05 0.95 1.46 16 14 N -0.49 -4.97 9.67 -188.72 -1.83 -6.80 16 15 C 0.12 1.16 6.58 40.26 0.26 1.42 16 16 C -0.11 -0.67 5.28 -19.77 -0.10 -0.77 16 17 C -0.08 -0.36 2.38 71.23 0.17 -0.19 16 18 O -0.55 -3.41 12.88 -148.98 -1.92 -5.32 16 19 Si 0.99 0.56 25.48 68.60 1.75 2.31 16 20 H -0.23 0.56 6.73 99.48 0.67 1.23 16 21 H -0.27 -1.08 7.11 99.48 0.71 -0.37 16 22 H -0.26 -0.40 7.11 99.48 0.71 0.31 16 23 C -0.10 -0.24 8.59 21.98 0.19 -0.05 16 24 C -0.11 -0.23 9.48 22.50 0.21 -0.02 16 25 C -0.13 -0.19 7.63 22.51 0.17 -0.02 16 26 C -0.09 0.11 9.28 22.24 0.21 0.32 16 27 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 28 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 31 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H 0.07 -0.43 7.67 -2.39 -0.02 -0.45 16 33 H 0.07 -0.43 7.67 -2.39 -0.02 -0.45 16 34 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 35 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.14 -0.77 7.40 -2.91 -0.02 -0.80 16 37 H 0.13 -0.16 8.04 -2.91 -0.02 -0.18 16 38 H 0.15 0.09 5.70 -2.91 -0.02 0.08 16 39 H 0.17 -0.95 8.06 -2.91 -0.02 -0.97 16 40 H 0.18 -0.33 8.06 -2.91 -0.02 -0.35 16 41 H 0.11 0.74 7.83 -2.39 -0.02 0.72 16 42 H 0.38 -0.50 8.70 -74.06 -0.64 -1.15 16 43 H 0.15 -0.38 4.76 -2.91 -0.01 -0.39 16 44 H 0.15 -0.36 8.03 -2.91 -0.02 -0.38 16 45 H 0.12 0.08 7.29 -2.91 -0.02 0.06 16 46 H 0.14 -0.75 7.40 -2.91 -0.02 -0.77 16 Total: 0.00 -16.42 378.07 5.49 -10.93 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: 1.06 Total: -6.37 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.58 Total: 12.37 kcal Atomic # 7 Polarization: -4.97 SS G_CDS: -1.83 Total: -6.80 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -1.92 Total: -5.32 kcal Atomic # 14 Polarization: -7.41 SS G_CDS: 2.59 Total: -4.81 kcal Total: -16.42 5.49 -10.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.483 kcal (2) G-P(sol) polarization free energy of solvation -16.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds