Wall clock time and date at job start Mon Mar 8 2021 09:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35906 * 117.00511 * 2 1 4 4 C 1.38502 * 119.99069 * 359.97438 * 3 2 1 5 5 C 1.39273 * 119.81776 * 179.78814 * 4 3 2 6 6 C 1.48402 * 120.09315 * 180.23293 * 5 4 3 7 7 C 1.39333 * 120.11985 * 359.97438 * 6 5 4 8 8 C 1.38024 * 119.87754 * 179.72403 * 7 6 5 9 9 C 1.38325 * 120.11978 * 0.55344 * 8 7 6 10 10 Si 1.86796 * 119.87908 * 179.70152 * 9 8 7 11 11 C 1.86299 * 109.47145 * 270.02077 * 10 9 8 12 12 C 1.86298 * 109.47093 * 30.02207 * 10 9 8 13 13 C 1.86303 * 109.47053 * 150.01949 * 10 9 8 14 14 C 1.38326 * 120.24180 * 359.71860 * 9 8 7 15 15 C 1.38021 * 120.12175 * 0.02562 * 14 9 8 16 16 C 1.39336 * 119.81688 * 0.48725 * 5 4 3 17 17 C 1.38078 * 119.98533 * 359.48774 * 16 5 4 18 18 C 1.38210 * 120.17684 * 0.28354 * 17 16 5 19 19 C 1.50699 * 119.90331 * 179.97438 * 18 17 16 20 20 O 1.42906 * 109.47267 * 104.99398 * 19 18 17 21 21 Si 1.86302 * 109.47181 * 344.99616 * 19 18 17 22 22 H 1.48511 * 109.46967 * 59.99895 * 21 19 18 23 23 H 1.48493 * 109.47185 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47344 * 300.00189 * 21 19 18 25 25 H 1.09002 * 109.47196 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46912 * 299.99898 * 1 2 3 27 27 H 1.09000 * 109.46909 * 59.99527 * 1 2 3 28 28 H 1.07998 * 120.09313 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.06257 * 359.97438 * 7 6 5 30 30 H 1.07997 * 119.94344 * 180.25533 * 8 7 6 31 31 H 1.09007 * 109.47191 * 59.99888 * 11 10 9 32 32 H 1.08994 * 109.47140 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47052 * 300.00392 * 11 10 9 34 34 H 1.08995 * 109.47660 * 59.99923 * 12 10 9 35 35 H 1.09003 * 109.47218 * 180.02562 * 12 10 9 36 36 H 1.09007 * 109.46905 * 299.99904 * 12 10 9 37 37 H 1.08993 * 109.46826 * 60.00228 * 13 10 9 38 38 H 1.09003 * 109.46409 * 179.97438 * 13 10 9 39 39 H 1.08995 * 109.47036 * 299.99670 * 13 10 9 40 40 H 1.07995 * 119.93565 * 179.97438 * 14 9 8 41 41 H 1.07995 * 120.06155 * 180.02562 * 15 14 9 42 42 H 1.08002 * 120.01184 * 179.77313 * 16 5 4 43 43 H 1.07997 * 119.90977 * 180.25203 * 17 16 5 44 44 H 1.08995 * 109.47154 * 224.99447 * 19 18 17 45 45 H 0.96698 * 113.99607 * 300.00257 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2917 2.3724 -0.0005 5 6 1.9278 3.6114 0.0039 6 6 1.1255 4.8597 0.0086 7 6 -0.2664 4.7963 0.0080 8 6 -1.0078 5.9605 0.0181 9 6 -0.3714 7.1887 0.0173 10 14 -1.3813 8.7601 0.0226 11 6 -1.7237 9.2841 -1.7321 12 6 -2.9933 8.4592 0.9067 13 6 -0.4341 10.1041 0.8986 14 6 1.0102 7.2575 0.0122 15 6 1.7613 6.0996 0.0074 16 6 3.3197 3.6755 -0.0014 17 6 4.0642 2.5126 -0.0003 18 6 3.4325 1.2833 0.0001 19 6 4.2510 0.0180 0.0006 20 8 4.2169 -0.5708 1.3023 21 14 6.0129 0.4180 -0.4541 22 1 6.5752 1.3718 0.5357 23 1 6.8196 -0.8287 -0.4529 24 1 6.0484 1.0299 -1.8067 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.2131 2.3175 -0.0005 29 1 -0.7643 3.8380 0.0037 30 1 -2.0867 5.9126 0.0218 31 1 -2.2779 8.4977 -2.2446 32 1 -2.3134 10.2008 -1.7290 33 1 -0.7806 9.4601 -2.2493 34 1 -2.7931 8.1526 1.9333 35 1 -3.5829 9.3760 0.9094 36 1 -3.5475 7.6728 0.3942 37 1 0.5090 10.2801 0.3813 38 1 -1.0234 11.0211 0.9012 39 1 -0.2339 9.7975 1.9252 40 1 1.5019 8.2190 0.0112 41 1 2.8399 6.1544 0.0038 42 1 3.8163 4.6346 -0.0016 43 1 5.1429 2.5638 -0.0003 44 1 3.8383 -0.6820 -0.7257 45 1 4.5698 -0.0023 2.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:18 Heat of formation + Delta-G solvation = -66.147399 kcal Electronic energy + Delta-G solvation = -23522.651658 eV Core-core repulsion = 20207.433007 eV Total energy + Delta-G solvation = -3315.218651 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49539 -39.95795 -38.49112 -37.38495 -33.83898 -32.21613 -31.04360 -30.58846 -29.51551 -28.51524 -28.43844 -28.31055 -26.44189 -24.19601 -23.44126 -22.40236 -21.69443 -19.31412 -18.07834 -17.58004 -17.29322 -16.84656 -16.47126 -16.02268 -15.81325 -15.70492 -15.34706 -15.00546 -14.56192 -14.49100 -14.34249 -14.30153 -14.20688 -13.95478 -13.86710 -13.55250 -13.40600 -13.29890 -13.19817 -13.14375 -12.96970 -12.92876 -12.48694 -12.18902 -12.06189 -11.92415 -11.77330 -11.52421 -11.11199 -10.93367 -10.86289 -10.41793 -10.28498 -9.83235 -9.43719 -8.86177 -0.40944 0.39591 0.52965 0.82232 1.20368 1.43990 1.56252 1.68338 1.82028 1.93087 1.95118 2.31257 2.51763 2.60614 3.10806 3.45880 3.63167 3.68519 3.84977 3.98615 4.05641 4.09692 4.19630 4.21631 4.27035 4.43740 4.48830 4.57201 4.61736 4.66235 4.67659 4.68410 4.71815 4.72616 4.73174 4.74024 4.89958 4.96596 5.07845 5.15780 5.26346 5.32725 5.40410 5.48313 5.49601 5.51369 5.60303 5.69988 5.76077 6.08564 6.40235 6.67474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.159 3.841 4 C -0.202 4.202 5 C 0.000 4.000 6 C -0.042 4.042 7 C -0.118 4.118 8 C -0.087 4.087 9 C -0.367 4.367 10 Si 1.059 2.941 11 C -0.449 4.449 12 C -0.450 4.450 13 C -0.449 4.449 14 C -0.087 4.087 15 C -0.117 4.117 16 C -0.143 4.143 17 C -0.087 4.087 18 C -0.154 4.154 19 C -0.069 4.069 20 O -0.534 6.534 21 Si 0.949 3.051 22 H -0.252 1.252 23 H -0.253 1.253 24 H -0.249 1.249 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.116 0.884 45 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 2.771 -0.139 3.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.113 3.887 4 C -0.220 4.220 5 C 0.000 4.000 6 C -0.042 4.042 7 C -0.136 4.136 8 C -0.105 4.105 9 C -0.408 4.408 10 Si 1.251 2.749 11 C -0.557 4.557 12 C -0.557 4.557 13 C -0.557 4.557 14 C -0.105 4.105 15 C -0.135 4.135 16 C -0.161 4.161 17 C -0.104 4.104 18 C -0.155 4.155 19 C -0.179 4.179 20 O -0.338 6.338 21 Si 0.771 3.229 22 H -0.176 1.176 23 H -0.177 1.177 24 H -0.172 1.172 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.134 0.866 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.922 2.197 -0.707 2.486 hybrid contribution -0.477 0.372 0.378 0.713 sum -1.398 2.569 -0.329 2.943 Atomic orbital electron populations 1.23127 0.78288 1.04386 1.01317 1.86176 1.21267 1.26117 1.87941 1.18636 0.91386 0.84268 0.94402 1.21337 1.00295 0.91443 1.08949 1.18614 0.92844 0.91631 0.96894 1.18781 0.93016 0.91959 1.00453 1.21284 0.93051 0.98685 1.00611 1.21020 0.99688 0.92176 0.97624 1.27463 1.00923 1.10491 1.01942 0.78184 0.65751 0.63528 0.67449 1.26127 1.05089 1.05702 1.18750 1.26138 1.16333 1.05013 1.08254 1.26133 1.08659 1.12743 1.08191 1.21035 0.94032 0.97872 0.97536 1.21329 0.99955 0.91886 1.00292 1.21069 0.92773 0.98526 1.03745 1.20898 0.99889 0.91358 0.98284 1.19696 0.91581 0.95893 1.08287 1.24830 1.08791 0.94918 0.89391 1.86563 1.86835 1.44360 1.16055 0.85752 0.75411 0.80503 0.81185 1.17600 1.17668 1.17248 0.87860 0.92550 0.92609 0.84840 0.86263 0.85946 0.91188 0.91030 0.91159 0.91051 0.90938 0.91198 0.91166 0.90944 0.91044 0.85875 0.85823 0.85147 0.85077 0.86590 0.78127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.30 -0.83 9.81 -19.44 -0.19 -1.02 16 3 C 0.16 0.43 6.65 -39.27 -0.26 0.17 16 4 C -0.20 -0.38 8.41 -39.10 -0.33 -0.71 16 5 C 0.00 0.00 5.87 -104.92 -0.62 -0.62 16 6 C -0.04 -0.08 5.88 -104.89 -0.62 -0.69 16 7 C -0.12 -0.13 9.43 -39.25 -0.37 -0.50 16 8 C -0.09 -0.02 9.28 -39.63 -0.37 -0.39 16 9 C -0.37 0.11 4.60 -39.52 -0.18 -0.07 16 10 Si 1.06 -2.82 12.31 -169.99 -2.09 -4.91 16 11 C -0.45 0.72 8.65 101.05 0.87 1.59 16 12 C -0.45 0.88 8.52 101.05 0.86 1.74 16 13 C -0.45 0.88 8.52 101.05 0.86 1.74 16 14 C -0.09 -0.02 9.28 -39.63 -0.37 -0.38 16 15 C -0.12 -0.12 9.43 -39.25 -0.37 -0.49 16 16 C -0.14 -0.18 9.43 -39.23 -0.37 -0.55 16 17 C -0.09 -0.10 8.64 -39.65 -0.34 -0.44 16 18 C -0.15 -0.32 5.28 -104.42 -0.55 -0.87 16 19 C -0.07 -0.09 2.37 36.01 0.09 -0.01 16 20 O -0.53 -1.11 12.88 -35.23 -0.45 -1.56 16 21 Si 0.95 0.18 25.48 -169.99 -4.33 -4.15 16 22 H -0.25 0.07 6.73 56.52 0.38 0.45 16 23 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 24 H -0.25 -0.20 7.11 56.52 0.40 0.21 16 25 H 0.10 -0.22 8.14 -51.93 -0.42 -0.64 16 26 H 0.06 -0.08 7.66 -51.93 -0.40 -0.48 16 27 H 0.06 -0.10 7.66 -51.93 -0.40 -0.49 16 28 H 0.13 0.02 4.44 -52.49 -0.23 -0.22 16 29 H 0.12 -0.05 6.21 -52.49 -0.33 -0.38 16 30 H 0.12 -0.22 7.40 -52.49 -0.39 -0.61 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 37 H 0.07 -0.15 7.67 -51.93 -0.40 -0.55 16 38 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 40 H 0.12 -0.22 7.40 -52.49 -0.39 -0.61 16 41 H 0.12 -0.08 6.20 -52.49 -0.33 -0.41 16 42 H 0.13 -0.09 6.20 -52.49 -0.33 -0.41 16 43 H 0.13 -0.08 4.87 -52.49 -0.26 -0.34 16 44 H 0.12 0.17 7.82 -51.93 -0.41 -0.24 16 45 H 0.37 -0.52 8.70 45.56 0.40 -0.12 16 LS Contribution 365.26 15.07 5.50 5.50 Total: 0.00 -6.14 365.26 -8.61 -14.75 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: -5.98 Total: -9.12 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.07 Total: 0.50 kcal Atomic # 8 Polarization: -1.94 SS G_CDS: -0.64 Total: -2.58 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: -6.42 Total: -9.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -6.14 -8.61 -14.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.396 kcal (2) G-P(sol) polarization free energy of solvation -6.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds