Wall clock time and date at job start Mon Mar 8 2021 09:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35906 * 117.00511 * 2 1 4 4 C 1.38502 * 119.99069 * 359.97438 * 3 2 1 5 5 C 1.39273 * 119.81776 * 179.78814 * 4 3 2 6 6 C 1.48402 * 120.09315 * 180.23293 * 5 4 3 7 7 C 1.39333 * 120.11985 * 359.97438 * 6 5 4 8 8 C 1.38024 * 119.87754 * 179.72403 * 7 6 5 9 9 C 1.38325 * 120.11978 * 0.55344 * 8 7 6 10 10 Si 1.86796 * 119.87908 * 179.70152 * 9 8 7 11 11 C 1.86299 * 109.47145 * 270.02077 * 10 9 8 12 12 C 1.86298 * 109.47093 * 30.02207 * 10 9 8 13 13 C 1.86303 * 109.47053 * 150.01949 * 10 9 8 14 14 C 1.38326 * 120.24180 * 359.71860 * 9 8 7 15 15 C 1.38021 * 120.12175 * 0.02562 * 14 9 8 16 16 C 1.39336 * 119.81688 * 0.48725 * 5 4 3 17 17 C 1.38078 * 119.98533 * 359.48774 * 16 5 4 18 18 C 1.38210 * 120.17684 * 0.28354 * 17 16 5 19 19 C 1.50699 * 119.90331 * 179.97438 * 18 17 16 20 20 O 1.42906 * 109.47267 * 104.99398 * 19 18 17 21 21 Si 1.86302 * 109.47181 * 344.99616 * 19 18 17 22 22 H 1.48511 * 109.46967 * 59.99895 * 21 19 18 23 23 H 1.48493 * 109.47185 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47344 * 300.00189 * 21 19 18 25 25 H 1.09002 * 109.47196 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46912 * 299.99898 * 1 2 3 27 27 H 1.09000 * 109.46909 * 59.99527 * 1 2 3 28 28 H 1.07998 * 120.09313 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.06257 * 359.97438 * 7 6 5 30 30 H 1.07997 * 119.94344 * 180.25533 * 8 7 6 31 31 H 1.09007 * 109.47191 * 59.99888 * 11 10 9 32 32 H 1.08994 * 109.47140 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47052 * 300.00392 * 11 10 9 34 34 H 1.08995 * 109.47660 * 59.99923 * 12 10 9 35 35 H 1.09003 * 109.47218 * 180.02562 * 12 10 9 36 36 H 1.09007 * 109.46905 * 299.99904 * 12 10 9 37 37 H 1.08993 * 109.46826 * 60.00228 * 13 10 9 38 38 H 1.09003 * 109.46409 * 179.97438 * 13 10 9 39 39 H 1.08995 * 109.47036 * 299.99670 * 13 10 9 40 40 H 1.07995 * 119.93565 * 179.97438 * 14 9 8 41 41 H 1.07995 * 120.06155 * 180.02562 * 15 14 9 42 42 H 1.08002 * 120.01184 * 179.77313 * 16 5 4 43 43 H 1.07997 * 119.90977 * 180.25203 * 17 16 5 44 44 H 1.08995 * 109.47154 * 224.99447 * 19 18 17 45 45 H 0.96698 * 113.99607 * 300.00257 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2917 2.3724 -0.0005 5 6 1.9278 3.6114 0.0039 6 6 1.1255 4.8597 0.0086 7 6 -0.2664 4.7963 0.0080 8 6 -1.0078 5.9605 0.0181 9 6 -0.3714 7.1887 0.0173 10 14 -1.3813 8.7601 0.0226 11 6 -1.7237 9.2841 -1.7321 12 6 -2.9933 8.4592 0.9067 13 6 -0.4341 10.1041 0.8986 14 6 1.0102 7.2575 0.0122 15 6 1.7613 6.0996 0.0074 16 6 3.3197 3.6755 -0.0014 17 6 4.0642 2.5126 -0.0003 18 6 3.4325 1.2833 0.0001 19 6 4.2510 0.0180 0.0006 20 8 4.2169 -0.5708 1.3023 21 14 6.0129 0.4180 -0.4541 22 1 6.5752 1.3718 0.5357 23 1 6.8196 -0.8287 -0.4529 24 1 6.0484 1.0299 -1.8067 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.2131 2.3175 -0.0005 29 1 -0.7643 3.8380 0.0037 30 1 -2.0867 5.9126 0.0218 31 1 -2.2779 8.4977 -2.2446 32 1 -2.3134 10.2008 -1.7290 33 1 -0.7806 9.4601 -2.2493 34 1 -2.7931 8.1526 1.9333 35 1 -3.5829 9.3760 0.9094 36 1 -3.5475 7.6728 0.3942 37 1 0.5090 10.2801 0.3813 38 1 -1.0234 11.0211 0.9012 39 1 -0.2339 9.7975 1.9252 40 1 1.5019 8.2190 0.0112 41 1 2.8399 6.1544 0.0038 42 1 3.8163 4.6346 -0.0016 43 1 5.1429 2.5638 -0.0003 44 1 3.8383 -0.6820 -0.7257 45 1 4.5698 -0.0023 2.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:17 Heat of formation + Delta-G solvation = -57.370558 kcal Electronic energy + Delta-G solvation = -23522.271066 eV Core-core repulsion = 20207.433007 eV Total energy + Delta-G solvation = -3314.838059 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55842 -39.96106 -38.56007 -37.46728 -33.88126 -32.21226 -31.08750 -30.59883 -29.35568 -28.39965 -28.26860 -28.22749 -26.50046 -24.21045 -23.48048 -22.42135 -21.73935 -19.36510 -18.15361 -17.58288 -17.35359 -16.90817 -16.51539 -16.01816 -15.85094 -15.73428 -15.35529 -15.04220 -14.57393 -14.48634 -14.31101 -14.28519 -14.04891 -13.82428 -13.72613 -13.52932 -13.32941 -13.13519 -13.10423 -13.01169 -12.92265 -12.87866 -12.50212 -12.22369 -12.09815 -11.93153 -11.78982 -11.56398 -11.00061 -10.78048 -10.75268 -10.42107 -10.36062 -9.83126 -9.50933 -8.91814 -0.45888 0.31239 0.53096 0.78680 1.16271 1.42815 1.53353 1.84868 1.90401 2.03108 2.09592 2.29470 2.56385 2.67163 3.08750 3.40901 3.60394 3.66718 3.81624 3.98774 4.08645 4.10583 4.20189 4.28708 4.30505 4.43290 4.49656 4.61149 4.64797 4.66203 4.83509 4.84443 4.84840 4.88506 4.89287 4.90408 4.91436 4.97480 5.06931 5.14922 5.22312 5.27572 5.46500 5.58753 5.59358 5.65859 5.67997 5.70202 5.73277 6.11876 6.33931 6.73062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.142 3.858 4 C -0.208 4.208 5 C -0.010 4.010 6 C -0.061 4.061 7 C -0.133 4.133 8 C -0.099 4.099 9 C -0.378 4.378 10 Si 1.127 2.873 11 C -0.464 4.464 12 C -0.463 4.463 13 C -0.462 4.462 14 C -0.098 4.098 15 C -0.129 4.129 16 C -0.150 4.150 17 C -0.089 4.089 18 C -0.165 4.165 19 C -0.075 4.075 20 O -0.552 6.552 21 Si 0.989 3.011 22 H -0.239 1.239 23 H -0.274 1.274 24 H -0.256 1.256 25 H 0.116 0.884 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.144 0.856 29 H 0.127 0.873 30 H 0.140 0.860 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.107 0.893 45 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 3.944 -0.018 4.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.096 3.904 4 C -0.227 4.227 5 C -0.010 4.010 6 C -0.061 4.061 7 C -0.151 4.151 8 C -0.117 4.117 9 C -0.417 4.417 10 Si 1.314 2.686 11 C -0.570 4.570 12 C -0.570 4.570 13 C -0.569 4.569 14 C -0.116 4.116 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.106 4.106 18 C -0.166 4.166 19 C -0.184 4.184 20 O -0.359 6.359 21 Si 0.812 3.188 22 H -0.162 1.162 23 H -0.200 1.200 24 H -0.180 1.180 25 H 0.134 0.866 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.125 0.875 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.969 3.372 -0.574 3.555 hybrid contribution -0.525 0.007 0.338 0.624 sum -1.493 3.378 -0.236 3.701 Atomic orbital electron populations 1.23328 0.76888 1.05487 1.02031 1.86140 1.22902 1.26477 1.88129 1.18871 0.91941 0.84504 0.95110 1.21484 1.00934 0.91312 1.08934 1.18810 0.93412 0.91832 0.96980 1.18936 0.93454 0.92209 1.01521 1.21517 0.93155 0.99556 1.00875 1.21334 1.00699 0.92159 0.97474 1.28056 1.01260 1.11559 1.00828 0.77157 0.64147 0.61392 0.65866 1.26299 1.05028 1.05875 1.19770 1.26286 1.17102 1.05281 1.08307 1.26271 1.09124 1.13263 1.08243 1.21367 0.94454 0.98480 0.97291 1.21584 1.00830 0.91963 1.00328 1.21338 0.92694 0.99397 1.03307 1.21103 1.00765 0.90936 0.97807 1.19902 0.91662 0.96522 1.08547 1.24991 1.09973 0.94478 0.88980 1.86516 1.87215 1.45317 1.16815 0.85175 0.73418 0.79415 0.80809 1.16191 1.19952 1.18033 0.86612 0.91963 0.91748 0.83828 0.85542 0.84254 0.91490 0.90692 0.91403 0.91313 0.90678 0.90951 0.90835 0.90690 0.91282 0.84028 0.84664 0.83449 0.83385 0.87532 0.76598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -2.24 9.81 -92.49 -0.91 -3.15 16 3 C 0.14 0.95 6.65 22.47 0.15 1.10 16 4 C -0.21 -1.02 8.41 22.58 0.19 -0.83 16 5 C -0.01 -0.05 5.87 -20.06 -0.12 -0.17 16 6 C -0.06 -0.26 5.88 -20.04 -0.12 -0.38 16 7 C -0.13 -0.38 9.43 22.48 0.21 -0.16 16 8 C -0.10 -0.04 9.28 22.24 0.21 0.16 16 9 C -0.38 0.37 4.60 22.31 0.10 0.47 16 10 Si 1.13 -6.90 12.31 68.60 0.84 -6.06 16 11 C -0.46 1.77 8.65 113.37 0.98 2.75 16 12 C -0.46 2.15 8.52 113.37 0.97 3.12 16 13 C -0.46 2.23 8.52 113.37 0.97 3.20 16 14 C -0.10 0.00 9.28 22.24 0.21 0.20 16 15 C -0.13 -0.28 9.43 22.48 0.21 -0.07 16 16 C -0.15 -0.41 9.43 22.50 0.21 -0.20 16 17 C -0.09 -0.21 8.64 22.22 0.19 -0.02 16 18 C -0.17 -0.83 5.28 -19.73 -0.10 -0.94 16 19 C -0.07 -0.27 2.37 71.24 0.17 -0.11 16 20 O -0.55 -2.81 12.88 -148.98 -1.92 -4.73 16 21 Si 0.99 0.42 25.48 68.60 1.75 2.16 16 22 H -0.24 0.45 6.73 99.48 0.67 1.12 16 23 H -0.27 -1.05 7.11 99.48 0.71 -0.34 16 24 H -0.26 -0.38 7.11 99.48 0.71 0.33 16 25 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.06 -0.13 7.66 -2.39 -0.02 -0.15 16 27 H 0.06 -0.17 7.66 -2.39 -0.02 -0.19 16 28 H 0.14 0.20 4.44 -2.91 -0.01 0.18 16 29 H 0.13 0.00 6.21 -2.91 -0.02 -0.02 16 30 H 0.14 -0.55 7.40 -2.91 -0.02 -0.57 16 31 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 32 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 33 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 34 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.07 -0.36 7.67 -2.38 -0.02 -0.38 16 37 H 0.07 -0.39 7.67 -2.39 -0.02 -0.41 16 38 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 39 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 40 H 0.14 -0.65 7.40 -2.91 -0.02 -0.67 16 41 H 0.14 -0.20 6.20 -2.91 -0.02 -0.22 16 42 H 0.15 -0.25 6.20 -2.91 -0.02 -0.27 16 43 H 0.15 -0.29 4.87 -2.91 -0.01 -0.30 16 44 H 0.11 0.51 7.82 -2.39 -0.02 0.49 16 45 H 0.39 -0.83 8.70 -74.06 -0.64 -1.47 16 Total: 0.00 -14.40 365.26 6.37 -8.03 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: 1.07 Total: -5.50 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.54 Total: 9.25 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -2.83 Total: -7.88 kcal Atomic # 14 Polarization: -6.49 SS G_CDS: 2.59 Total: -3.90 kcal Total: -14.40 6.37 -8.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.342 kcal (2) G-P(sol) polarization free energy of solvation -14.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds