Wall clock time and date at job start Mon Mar 8 2021 09:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86303 * 109.47357 * 2 1 4 4 C 1.86305 * 109.47064 * 240.00303 * 2 1 3 5 5 C 1.86800 * 109.47029 * 120.00154 * 2 1 3 6 6 C 1.38326 * 119.87297 * 89.99982 * 5 2 1 7 7 C 1.38015 * 120.12151 * 180.02562 * 6 5 2 8 8 C 1.39363 * 119.87457 * 359.97438 * 7 6 5 9 9 C 1.48327 * 120.12211 * 180.02562 * 8 7 6 10 10 C 1.39265 * 120.15447 * 310.28432 * 9 8 7 11 11 C 1.38042 * 119.93474 * 180.20814 * 10 9 8 12 12 C 1.38353 * 120.23777 * 359.50880 * 11 10 9 13 13 C 1.38229 * 120.30131 * 0.25960 * 12 11 10 14 14 C 1.50701 * 119.96636 * 179.97438 * 13 12 11 15 15 O 1.42897 * 109.47002 * 74.05084 * 14 13 12 16 16 Si 1.86295 * 109.47210 * 314.04615 * 14 13 12 17 17 H 1.48504 * 109.47194 * 60.00384 * 16 14 13 18 18 H 1.48504 * 109.47273 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47513 * 299.99995 * 16 14 13 20 20 C 1.38545 * 120.06268 * 359.97247 * 13 12 11 21 21 O 1.35842 * 120.11496 * 180.02562 * 20 13 12 22 22 C 1.42902 * 116.99514 * 91.89217 * 21 20 13 23 23 F 1.39901 * 109.47080 * 304.49440 * 22 21 20 24 24 F 1.39895 * 109.47623 * 64.49710 * 22 21 20 25 25 C 1.39366 * 119.75276 * 0.28174 * 8 7 6 26 26 C 1.38013 * 119.87341 * 359.44324 * 25 8 7 27 27 H 1.09000 * 109.47010 * 300.00165 * 1 2 3 28 28 H 1.09006 * 109.47106 * 59.99922 * 1 2 3 29 29 H 1.08999 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47266 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46994 * 300.00527 * 3 2 1 32 32 H 1.09003 * 109.46713 * 59.99812 * 3 2 1 33 33 H 1.08997 * 109.46747 * 299.99798 * 4 2 1 34 34 H 1.08998 * 109.47143 * 60.00140 * 4 2 1 35 35 H 1.08994 * 109.46916 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.94112 * 0.02562 * 6 5 2 37 37 H 1.08001 * 120.06331 * 180.02562 * 7 6 5 38 38 H 1.07998 * 120.03259 * 359.97270 * 10 9 8 39 39 H 1.07993 * 119.88430 * 179.78964 * 11 10 9 40 40 H 1.07996 * 119.85123 * 180.27627 * 12 11 10 41 41 H 1.09003 * 109.46898 * 194.04524 * 14 13 12 42 42 H 0.96705 * 114.00241 * 179.97438 * 15 14 13 43 43 H 1.09010 * 109.46765 * 184.50317 * 22 21 20 44 44 H 1.08001 * 120.05912 * 179.69698 * 25 8 7 45 45 H 1.08001 * 119.93655 * 180.25389 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2442 1.4880 7 6 3.1748 -2.9001 2.6120 8 6 3.4079 -2.1859 3.7858 9 6 3.9023 -2.8852 4.9969 10 6 3.2694 -4.0424 5.4439 11 6 3.7307 -4.6871 6.5740 12 6 4.8266 -4.1936 7.2593 13 6 5.4652 -3.0485 6.8215 14 6 6.6578 -2.5173 7.5741 15 8 7.7918 -3.3479 7.3170 16 14 6.2898 -2.5164 9.4003 17 1 5.9997 -3.9025 9.8475 18 1 7.4653 -1.9935 10.1420 19 1 5.1114 -1.6533 9.6674 20 6 5.0098 -2.3887 5.6915 21 8 5.6368 -1.2636 5.2601 22 6 6.6804 -1.4309 4.2983 23 9 7.6373 -2.3205 4.7984 24 9 6.1436 -1.9420 3.1118 25 6 3.1697 -0.8132 3.8190 26 6 2.7156 -0.1667 2.6874 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2703 -0.8899 32 1 2.1207 2.2703 0.8900 33 1 2.1207 -1.9058 -1.5212 34 1 2.1207 -0.3643 -2.4112 35 1 3.5739 -0.8786 -1.5210 36 1 2.5347 -2.7966 0.5777 37 1 3.3542 -3.9647 2.5818 38 1 2.4162 -4.4328 4.9091 39 1 3.2372 -5.5825 6.9218 40 1 5.1849 -4.7055 8.1401 41 1 6.8708 -1.4999 7.2459 42 1 8.5978 -3.0645 7.7701 43 1 7.1492 -0.4670 4.0995 44 1 3.3440 -0.2557 4.7275 45 1 2.5346 0.8978 2.7108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:25 Heat of formation + Delta-G solvation = -172.420415 kcal Electronic energy + Delta-G solvation = -29859.888981 eV Core-core repulsion = 25601.154035 eV Total energy + Delta-G solvation = -4258.734946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.88886 -48.00157 -41.42489 -39.51677 -38.36480 -37.51274 -33.77707 -32.03559 -31.72852 -29.95904 -29.32491 -28.41754 -28.38577 -27.22167 -26.39797 -24.18839 -23.42206 -22.45776 -21.45942 -19.81298 -19.12217 -18.65058 -18.35721 -17.95350 -17.10430 -16.89017 -16.38127 -15.78529 -15.72347 -15.52372 -15.20846 -14.79002 -14.60051 -14.48146 -14.41002 -14.31806 -14.24331 -14.15763 -14.04381 -13.81499 -13.65467 -13.56632 -13.46693 -13.25892 -13.23569 -13.10554 -13.07613 -13.01575 -12.84971 -12.49663 -12.23267 -11.94472 -11.80200 -11.57259 -11.02573 -10.87491 -10.75259 -10.45864 -10.14188 -9.70898 -9.67197 -9.11895 -0.20438 0.01665 0.64290 0.67664 1.13429 1.41863 1.48833 1.76513 1.88265 1.88530 1.94175 1.99678 2.58564 2.63034 2.75662 3.03634 3.36853 3.58907 3.63021 3.82069 3.88216 3.93497 4.14416 4.17612 4.21324 4.32305 4.36996 4.44869 4.60293 4.71402 4.72822 4.74649 4.77872 4.78369 4.78895 4.80989 4.86430 5.06680 5.18571 5.27410 5.31591 5.39803 5.45227 5.48255 5.53739 5.55936 5.60127 5.72115 5.76085 6.09253 6.22679 6.60118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.057 2.943 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.365 4.365 6 C -0.088 4.088 7 C -0.109 4.109 8 C -0.038 4.038 9 C -0.046 4.046 10 C -0.095 4.095 11 C -0.106 4.106 12 C -0.104 4.104 13 C -0.071 4.071 14 C -0.081 4.081 15 O -0.535 6.535 16 Si 0.947 3.053 17 H -0.246 1.246 18 H -0.251 1.251 19 H -0.249 1.249 20 C 0.095 3.905 21 O -0.328 6.328 22 C 0.404 3.596 23 F -0.190 7.190 24 F -0.197 7.197 25 C -0.104 4.104 26 C -0.090 4.090 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.076 0.924 42 H 0.379 0.621 43 H 0.170 0.830 44 H 0.121 0.879 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 1.733 0.246 1.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.249 2.751 3 C -0.556 4.556 4 C -0.557 4.557 5 C -0.407 4.407 6 C -0.106 4.106 7 C -0.127 4.127 8 C -0.038 4.038 9 C -0.046 4.046 10 C -0.113 4.113 11 C -0.124 4.124 12 C -0.122 4.122 13 C -0.072 4.072 14 C -0.191 4.191 15 O -0.341 6.341 16 Si 0.768 3.232 17 H -0.169 1.169 18 H -0.175 1.175 19 H -0.172 1.172 20 C 0.053 3.947 21 O -0.248 6.248 22 C 0.315 3.685 23 F -0.172 7.172 24 F -0.179 7.179 25 C -0.122 4.122 26 C -0.108 4.108 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.094 0.906 42 H 0.226 0.774 43 H 0.186 0.814 44 H 0.139 0.861 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.885 1.531 0.852 1.963 hybrid contribution 0.707 -0.083 -0.114 0.721 sum -0.178 1.448 0.738 1.635 Atomic orbital electron populations 1.26123 1.20516 1.04543 1.04427 0.78205 0.66846 0.66153 0.63884 1.26126 1.06437 1.18577 1.04500 1.26134 1.06473 1.08035 1.15058 1.27386 1.03775 0.99447 1.10108 1.20962 0.97507 0.94620 0.97533 1.21216 0.99393 0.99502 0.92557 1.18576 0.99620 0.93494 0.92141 1.19124 0.95597 0.95123 0.94787 1.21230 0.99775 0.93830 0.96494 1.21202 0.96163 1.00015 0.94997 1.21138 0.95495 0.94802 1.00753 1.19403 0.96251 0.95594 0.95941 1.24650 0.87505 0.96547 1.10357 1.86556 1.19500 1.53675 1.74362 0.85784 0.81683 0.81811 0.73933 1.16892 1.17469 1.17200 1.18204 0.93703 0.88987 0.93851 1.86590 1.49671 1.29882 1.58678 1.23471 0.78740 0.91390 0.74930 1.93168 1.64320 1.72595 1.87108 1.93123 1.86599 1.89758 1.48402 1.21273 0.98957 0.93211 0.98756 1.20981 0.97676 0.99524 0.92593 0.91184 0.91111 0.91191 0.91077 0.91023 0.91187 0.91200 0.91030 0.91062 0.86124 0.86403 0.84796 0.84743 0.84624 0.90597 0.77434 0.81368 0.86073 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.50 8.65 101.05 0.87 1.38 16 2 Si 1.06 -2.14 12.31 -169.99 -2.09 -4.24 16 3 C -0.45 0.66 8.52 101.05 0.86 1.53 16 4 C -0.45 0.58 8.52 101.05 0.86 1.44 16 5 C -0.37 -0.17 4.60 -39.52 -0.18 -0.35 16 6 C -0.09 -0.10 9.28 -39.63 -0.37 -0.47 16 7 C -0.11 -0.24 9.50 -39.24 -0.37 -0.61 16 8 C -0.04 -0.11 3.70 -104.91 -0.39 -0.49 16 9 C -0.05 -0.13 5.38 -104.77 -0.56 -0.70 16 10 C -0.10 -0.14 9.50 -39.27 -0.37 -0.51 16 11 C -0.11 -0.08 10.03 -39.61 -0.40 -0.48 16 12 C -0.10 -0.17 8.68 -39.54 -0.34 -0.52 16 13 C -0.07 -0.18 4.62 -104.51 -0.48 -0.67 16 14 C -0.08 -0.06 1.93 36.01 0.07 0.01 16 15 O -0.54 -0.53 11.79 -35.23 -0.42 -0.95 16 16 Si 0.95 -0.10 26.69 -169.99 -4.54 -4.63 16 17 H -0.25 -0.11 6.51 56.52 0.37 0.26 16 18 H -0.25 0.06 7.11 56.52 0.40 0.46 16 19 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 20 C 0.10 0.30 5.21 -38.87 -0.20 0.10 16 21 O -0.33 -0.70 7.57 -19.24 -0.15 -0.85 16 22 C 0.40 0.44 6.36 101.05 0.64 1.08 16 23 F -0.19 -0.56 15.01 2.25 0.03 -0.53 16 24 F -0.20 -0.65 15.62 2.25 0.04 -0.61 16 25 C -0.10 -0.23 8.79 -39.24 -0.34 -0.58 16 26 C -0.09 -0.09 9.28 -39.63 -0.37 -0.46 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.12 7.67 -51.93 -0.40 -0.51 16 33 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 36 H 0.12 -0.09 7.40 -52.49 -0.39 -0.47 16 37 H 0.12 0.15 8.04 -52.49 -0.42 -0.27 16 38 H 0.13 -0.03 8.04 -52.49 -0.42 -0.45 16 39 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 40 H 0.14 0.05 6.31 -52.49 -0.33 -0.29 16 41 H 0.08 0.00 6.94 -51.93 -0.36 -0.36 16 42 H 0.38 -1.24 8.74 45.56 0.40 -0.84 16 43 H 0.17 -0.55 8.14 -51.92 -0.42 -0.97 16 44 H 0.12 0.22 7.71 -52.49 -0.40 -0.19 16 45 H 0.12 -0.11 7.40 -52.49 -0.39 -0.50 16 LS Contribution 380.09 15.07 5.73 5.73 Total: 0.00 -6.86 380.09 -8.15 -15.01 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -5.68 Total: -8.63 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.08 Total: -0.31 kcal Atomic # 8 Polarization: -1.24 SS G_CDS: -0.56 Total: -1.80 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.07 Total: -1.14 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: -6.63 Total: -8.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -6.86 -8.15 -15.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.409 kcal (2) G-P(sol) polarization free energy of solvation -6.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds