Wall clock time and date at job start Mon Mar 8 2021 09:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86303 * 109.47357 * 2 1 4 4 C 1.86305 * 109.47064 * 240.00303 * 2 1 3 5 5 C 1.86800 * 109.47029 * 120.00154 * 2 1 3 6 6 C 1.38326 * 119.87297 * 89.99982 * 5 2 1 7 7 C 1.38015 * 120.12151 * 180.02562 * 6 5 2 8 8 C 1.39363 * 119.87457 * 359.97438 * 7 6 5 9 9 C 1.48327 * 120.12211 * 180.02562 * 8 7 6 10 10 C 1.39265 * 120.15447 * 310.28432 * 9 8 7 11 11 C 1.38042 * 119.93474 * 180.20814 * 10 9 8 12 12 C 1.38353 * 120.23777 * 359.50880 * 11 10 9 13 13 C 1.38229 * 120.30131 * 0.25960 * 12 11 10 14 14 C 1.50701 * 119.96636 * 179.97438 * 13 12 11 15 15 O 1.42897 * 109.47002 * 74.05084 * 14 13 12 16 16 Si 1.86295 * 109.47210 * 314.04615 * 14 13 12 17 17 H 1.48504 * 109.47194 * 60.00384 * 16 14 13 18 18 H 1.48504 * 109.47273 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47513 * 299.99995 * 16 14 13 20 20 C 1.38545 * 120.06268 * 359.97247 * 13 12 11 21 21 O 1.35842 * 120.11496 * 180.02562 * 20 13 12 22 22 C 1.42902 * 116.99514 * 91.89217 * 21 20 13 23 23 F 1.39901 * 109.47080 * 304.49440 * 22 21 20 24 24 F 1.39895 * 109.47623 * 64.49710 * 22 21 20 25 25 C 1.39366 * 119.75276 * 0.28174 * 8 7 6 26 26 C 1.38013 * 119.87341 * 359.44324 * 25 8 7 27 27 H 1.09000 * 109.47010 * 300.00165 * 1 2 3 28 28 H 1.09006 * 109.47106 * 59.99922 * 1 2 3 29 29 H 1.08999 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47266 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46994 * 300.00527 * 3 2 1 32 32 H 1.09003 * 109.46713 * 59.99812 * 3 2 1 33 33 H 1.08997 * 109.46747 * 299.99798 * 4 2 1 34 34 H 1.08998 * 109.47143 * 60.00140 * 4 2 1 35 35 H 1.08994 * 109.46916 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.94112 * 0.02562 * 6 5 2 37 37 H 1.08001 * 120.06331 * 180.02562 * 7 6 5 38 38 H 1.07998 * 120.03259 * 359.97270 * 10 9 8 39 39 H 1.07993 * 119.88430 * 179.78964 * 11 10 9 40 40 H 1.07996 * 119.85123 * 180.27627 * 12 11 10 41 41 H 1.09003 * 109.46898 * 194.04524 * 14 13 12 42 42 H 0.96705 * 114.00241 * 179.97438 * 15 14 13 43 43 H 1.09010 * 109.46765 * 184.50317 * 22 21 20 44 44 H 1.08001 * 120.05912 * 179.69698 * 25 8 7 45 45 H 1.08001 * 119.93655 * 180.25389 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7153 -2.2442 1.4880 7 6 3.1748 -2.9001 2.6120 8 6 3.4079 -2.1859 3.7858 9 6 3.9023 -2.8852 4.9969 10 6 3.2694 -4.0424 5.4439 11 6 3.7307 -4.6871 6.5740 12 6 4.8266 -4.1936 7.2593 13 6 5.4652 -3.0485 6.8215 14 6 6.6578 -2.5173 7.5741 15 8 7.7918 -3.3479 7.3170 16 14 6.2898 -2.5164 9.4003 17 1 5.9997 -3.9025 9.8475 18 1 7.4653 -1.9935 10.1420 19 1 5.1114 -1.6533 9.6674 20 6 5.0098 -2.3887 5.6915 21 8 5.6368 -1.2636 5.2601 22 6 6.6804 -1.4309 4.2983 23 9 7.6373 -2.3205 4.7984 24 9 6.1436 -1.9420 3.1118 25 6 3.1697 -0.8132 3.8190 26 6 2.7156 -0.1667 2.6874 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2703 -0.8899 32 1 2.1207 2.2703 0.8900 33 1 2.1207 -1.9058 -1.5212 34 1 2.1207 -0.3643 -2.4112 35 1 3.5739 -0.8786 -1.5210 36 1 2.5347 -2.7966 0.5777 37 1 3.3542 -3.9647 2.5818 38 1 2.4162 -4.4328 4.9091 39 1 3.2372 -5.5825 6.9218 40 1 5.1849 -4.7055 8.1401 41 1 6.8708 -1.4999 7.2459 42 1 8.5978 -3.0645 7.7701 43 1 7.1492 -0.4670 4.0995 44 1 3.3440 -0.2557 4.7275 45 1 2.5346 0.8978 2.7108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:24 Heat of formation + Delta-G solvation = -163.490637 kcal Electronic energy + Delta-G solvation = -29859.501757 eV Core-core repulsion = 25601.154035 eV Total energy + Delta-G solvation = -4258.347722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.02974 -48.15929 -41.50493 -39.57957 -38.44147 -37.54523 -33.84486 -32.10399 -31.79436 -29.98016 -29.25149 -28.28429 -28.25882 -27.27747 -26.45755 -24.27217 -23.49066 -22.53471 -21.53858 -19.91263 -19.19053 -18.76562 -18.39618 -18.00974 -17.18803 -16.97137 -16.43592 -15.84012 -15.78552 -15.58644 -15.26950 -14.95971 -14.63858 -14.55464 -14.53742 -14.41382 -14.28953 -14.04499 -13.97097 -13.72994 -13.69445 -13.58614 -13.50153 -13.18074 -13.13272 -13.10385 -13.05723 -12.95648 -12.90074 -12.52238 -12.24802 -11.99637 -11.84084 -11.62799 -10.94021 -10.74710 -10.74368 -10.49071 -10.19870 -9.79273 -9.76408 -9.20299 -0.29968 -0.07025 0.57040 0.58200 1.12497 1.42924 1.48263 1.85775 1.86958 1.90528 2.04451 2.11892 2.56966 2.68654 2.69876 2.97254 3.34492 3.53653 3.64672 3.74428 3.87900 3.90832 4.08844 4.13143 4.14573 4.25499 4.29930 4.41536 4.55803 4.71100 4.79680 4.85596 4.85902 4.89522 4.90256 4.91271 4.91972 4.99374 5.12989 5.19354 5.23831 5.30923 5.42328 5.50473 5.60284 5.60948 5.66715 5.68684 5.72509 5.99640 6.16838 6.78873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.124 2.876 3 C -0.460 4.460 4 C -0.462 4.462 5 C -0.377 4.377 6 C -0.098 4.098 7 C -0.124 4.124 8 C -0.049 4.049 9 C -0.062 4.062 10 C -0.103 4.103 11 C -0.105 4.105 12 C -0.116 4.116 13 C -0.088 4.088 14 C -0.084 4.084 15 O -0.552 6.552 16 Si 0.985 3.015 17 H -0.253 1.253 18 H -0.246 1.246 19 H -0.269 1.269 20 C 0.078 3.922 21 O -0.331 6.331 22 C 0.396 3.604 23 F -0.203 7.203 24 F -0.212 7.212 25 C -0.117 4.117 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.080 0.920 42 H 0.395 0.605 43 H 0.213 0.787 44 H 0.118 0.882 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 2.122 -0.060 2.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.311 2.689 3 C -0.567 4.567 4 C -0.569 4.569 5 C -0.416 4.416 6 C -0.115 4.115 7 C -0.142 4.142 8 C -0.049 4.049 9 C -0.063 4.063 10 C -0.121 4.121 11 C -0.123 4.123 12 C -0.134 4.134 13 C -0.089 4.089 14 C -0.193 4.193 15 O -0.360 6.360 16 Si 0.806 3.194 17 H -0.177 1.177 18 H -0.169 1.169 19 H -0.193 1.193 20 C 0.035 3.965 21 O -0.250 6.250 22 C 0.307 3.693 23 F -0.185 7.185 24 F -0.194 7.194 25 C -0.136 4.136 26 C -0.114 4.114 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.137 0.863 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.164 0.836 41 H 0.098 0.902 42 H 0.245 0.755 43 H 0.229 0.771 44 H 0.136 0.864 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.923 1.912 0.560 2.196 hybrid contribution 0.721 -0.213 -0.033 0.752 sum -0.203 1.699 0.527 1.790 Atomic orbital electron populations 1.26273 1.21525 1.04433 1.04558 0.77219 0.65270 0.64795 0.61619 1.26245 1.06412 1.19174 1.04881 1.26280 1.06334 1.08447 1.15850 1.28014 1.03000 0.99417 1.11135 1.21263 0.97222 0.95236 0.97827 1.21371 1.00091 0.99785 0.92983 1.18676 1.00047 0.93825 0.92344 1.19355 0.95950 0.95791 0.95155 1.21461 1.00151 0.93609 0.96896 1.21510 0.95787 1.00535 0.94441 1.21389 0.95851 0.94819 1.01297 1.19719 0.97067 0.96000 0.96106 1.24748 0.87069 0.96527 1.10931 1.86509 1.20384 1.54104 1.75027 0.85253 0.80725 0.80676 0.72740 1.17685 1.16901 1.19325 1.18407 0.94185 0.89533 0.94406 1.86572 1.49887 1.29727 1.58849 1.24204 0.78392 0.92557 0.74132 1.93136 1.64710 1.73345 1.87269 1.93087 1.86891 1.90139 1.49290 1.21374 0.99698 0.93250 0.99231 1.21276 0.97240 1.00537 0.92394 0.91393 0.90654 0.91451 0.91272 0.90627 0.90872 0.91038 0.90616 0.91431 0.84516 0.86295 0.83590 0.82298 0.83596 0.90223 0.75492 0.77135 0.86399 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.32 8.65 113.37 0.98 2.30 16 2 Si 1.12 -5.29 12.31 68.60 0.84 -4.45 16 3 C -0.46 1.75 8.52 113.37 0.97 2.72 16 4 C -0.46 1.48 8.52 113.37 0.97 2.44 16 5 C -0.38 -0.37 4.60 22.31 0.10 -0.27 16 6 C -0.10 -0.27 9.28 22.24 0.21 -0.07 16 7 C -0.12 -0.70 9.50 22.49 0.21 -0.49 16 8 C -0.05 -0.34 3.70 -20.05 -0.07 -0.41 16 9 C -0.06 -0.46 5.38 -19.96 -0.11 -0.56 16 10 C -0.10 -0.41 9.50 22.47 0.21 -0.20 16 11 C -0.11 -0.21 10.03 22.25 0.22 0.01 16 12 C -0.12 -0.47 8.68 22.29 0.19 -0.28 16 13 C -0.09 -0.55 4.62 -19.79 -0.09 -0.64 16 14 C -0.08 -0.19 1.93 71.24 0.14 -0.05 16 15 O -0.55 -1.32 11.79 -148.98 -1.76 -3.08 16 16 Si 0.98 0.01 26.69 68.60 1.83 1.84 16 17 H -0.25 -0.24 6.51 99.48 0.65 0.40 16 18 H -0.25 0.27 7.11 99.48 0.71 0.98 16 19 H -0.27 -0.82 7.11 99.48 0.71 -0.11 16 20 C 0.08 0.59 5.21 22.73 0.12 0.71 16 21 O -0.33 -1.79 7.57 -91.77 -0.70 -2.49 16 22 C 0.40 1.12 6.36 113.37 0.72 1.84 16 23 F -0.20 -1.36 15.01 44.97 0.68 -0.69 16 24 F -0.21 -1.64 15.62 44.97 0.70 -0.94 16 25 C -0.12 -0.67 8.79 22.49 0.20 -0.47 16 26 C -0.10 -0.23 9.28 22.24 0.21 -0.03 16 27 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 28 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 29 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 30 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 31 H 0.07 -0.33 7.96 -2.39 -0.02 -0.34 16 32 H 0.07 -0.31 7.67 -2.39 -0.02 -0.33 16 33 H 0.07 -0.24 7.67 -2.39 -0.02 -0.26 16 34 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 36 H 0.14 -0.19 7.40 -2.91 -0.02 -0.21 16 37 H 0.12 0.50 8.04 -2.91 -0.02 0.48 16 38 H 0.15 0.07 8.04 -2.91 -0.02 0.04 16 39 H 0.16 -0.61 8.06 -2.91 -0.02 -0.63 16 40 H 0.15 0.16 6.31 -2.91 -0.02 0.14 16 41 H 0.08 0.06 6.94 -2.39 -0.02 0.04 16 42 H 0.40 -2.57 8.74 -74.05 -0.65 -3.21 16 43 H 0.21 -1.46 8.14 -2.38 -0.02 -1.48 16 44 H 0.12 0.63 7.71 -2.91 -0.02 0.61 16 45 H 0.14 -0.29 7.40 -2.91 -0.02 -0.31 16 Total: 0.00 -16.60 380.09 7.83 -8.77 By element: Atomic # 1 Polarization: -6.59 SS G_CDS: 1.05 Total: -5.54 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.17 Total: 6.56 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -2.45 Total: -5.57 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 1.38 Total: -1.62 kcal Atomic # 14 Polarization: -5.28 SS G_CDS: 2.67 Total: -2.60 kcal Total: -16.60 7.83 -8.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.721 kcal (2) G-P(sol) polarization free energy of solvation -16.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds