Wall clock time and date at job start Mon Mar 8 2021 09:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38001 * 120.06281 * 2 1 4 4 C 1.38333 * 120.11841 * 179.97438 * 3 2 1 5 5 C 1.38294 * 120.24908 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.94450 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47472 * 245.00246 * 6 5 4 8 8 Si 1.86305 * 109.46931 * 4.99745 * 6 5 4 9 9 H 1.48496 * 109.47049 * 180.02562 * 8 6 5 10 10 H 1.48502 * 109.47137 * 300.00087 * 8 6 5 11 11 H 1.48500 * 109.46830 * 60.00208 * 8 6 5 12 12 C 1.38046 * 120.11904 * 0.02562 * 5 4 3 13 13 C 1.39315 * 119.87688 * 359.66470 * 12 5 4 14 14 C 1.48389 * 120.12065 * 180.34277 * 13 12 5 15 15 C 1.39334 * 120.12194 * 55.77064 * 14 13 12 16 16 C 1.38020 * 119.87850 * 179.71593 * 15 14 13 17 17 C 1.38328 * 120.11802 * 0.58056 * 16 15 14 18 18 Si 1.86797 * 119.87562 * 179.69353 * 17 16 15 19 19 C 1.86296 * 109.47168 * 269.97707 * 18 17 16 20 20 C 1.86298 * 109.47165 * 29.98107 * 18 17 16 21 21 C 1.86305 * 109.46694 * 149.97618 * 18 17 16 22 22 C 1.38324 * 120.24143 * 359.67142 * 17 16 15 23 23 C 1.38012 * 120.12567 * 0.04635 * 22 17 16 24 24 H 1.09001 * 109.46939 * 95.36400 * 1 2 3 25 25 H 1.09006 * 109.46557 * 335.36716 * 1 2 3 26 26 H 1.08996 * 109.47053 * 215.36783 * 1 2 3 27 27 H 1.08002 * 119.93453 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.87530 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47443 * 124.99818 * 6 5 4 30 30 H 0.96692 * 114.00486 * 180.02562 * 7 6 5 31 31 H 1.08006 * 120.05881 * 179.97438 * 12 5 4 32 32 H 1.08000 * 120.05823 * 359.97438 * 15 14 13 33 33 H 1.07994 * 119.94367 * 180.27390 * 16 15 14 34 34 H 1.08998 * 109.47416 * 60.00400 * 19 18 17 35 35 H 1.09007 * 109.47091 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47093 * 299.99869 * 19 18 17 37 37 H 1.08993 * 109.47337 * 59.99658 * 20 18 17 38 38 H 1.09007 * 109.46863 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.46954 * 299.99315 * 20 18 17 40 40 H 1.09003 * 109.46900 * 60.00450 * 21 18 17 41 41 H 1.09007 * 109.47073 * 179.97438 * 21 18 17 42 42 H 1.08993 * 109.47349 * 300.00060 * 21 18 17 43 43 H 1.07999 * 119.93718 * 180.02562 * 22 17 16 44 44 H 1.08002 * 120.06564 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1944 0.0000 4 6 3.5817 1.1957 0.0005 5 6 4.2796 0.0017 0.0005 6 6 5.7866 0.0112 0.0017 7 8 6.2675 -0.5546 -1.2192 8 14 6.3964 1.7649 0.1560 9 1 7.8813 1.7743 0.1565 10 1 5.8972 2.5652 -0.9910 11 1 5.8967 2.3528 1.4248 12 6 3.5982 -1.1988 -0.0005 13 6 2.2051 -1.2062 0.0055 14 6 1.4672 -2.4936 0.0120 15 6 1.7119 -3.4347 1.0099 16 6 1.0185 -4.6281 1.0145 17 6 0.0907 -4.8956 0.0241 18 14 -0.8377 -6.5165 0.0320 19 6 0.1135 -7.7818 -0.9501 20 6 -1.0337 -7.1113 1.7866 21 6 -2.5191 -6.2726 -0.7324 22 6 -0.1524 -3.9670 -0.9719 23 6 0.5311 -2.7680 -0.9830 24 1 -0.3633 -0.0961 -1.0232 25 1 -0.3633 0.9342 0.4284 26 1 -0.3633 -0.8380 0.5948 27 1 1.6584 2.1297 0.0004 28 1 4.1188 2.1327 0.0010 29 1 6.1530 -0.5763 0.8435 30 1 7.2316 -0.5811 -1.2875 31 1 4.1442 -2.1307 -0.0009 32 1 2.4399 -3.2290 1.7807 33 1 1.2042 -5.3564 1.7900 34 1 1.0972 -7.9245 -0.5029 35 1 -0.4285 -8.7276 -0.9459 36 1 0.2281 -7.4338 -1.9767 37 1 -1.5902 -6.3709 2.3612 38 1 -1.5759 -8.0569 1.7912 39 1 -0.0500 -7.2539 2.2338 40 1 -2.4045 -5.9246 -1.7590 41 1 -3.0608 -7.2186 -0.7282 42 1 -3.0756 -5.5323 -0.1578 43 1 -0.8781 -4.1808 -1.7426 44 1 0.3408 -2.0439 -1.7613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:38 Heat of formation + Delta-G solvation = -39.372631 kcal Electronic energy + Delta-G solvation = -21482.761347 eV Core-core repulsion = 18487.385929 eV Total energy + Delta-G solvation = -2995.375418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01676 -39.37982 -37.65143 -34.35861 -33.16004 -31.78517 -30.07929 -29.41657 -29.14085 -28.41693 -28.39083 -25.21846 -24.35553 -23.31378 -22.33273 -21.03510 -18.49471 -17.86160 -17.20995 -16.72143 -16.32261 -15.83083 -15.51787 -15.40924 -14.78526 -14.59814 -14.37906 -14.35692 -14.21624 -14.14436 -14.04641 -13.80951 -13.53311 -13.36874 -13.24651 -13.22279 -13.13509 -13.08312 -13.00804 -12.70811 -12.21096 -12.15732 -11.93272 -11.78499 -11.64321 -11.01771 -10.88652 -10.76990 -10.35544 -10.04088 -9.72041 -9.55576 -9.12521 -0.01562 0.40055 0.62823 0.67952 1.13623 1.42751 1.49006 1.75136 1.87384 1.89424 1.98151 2.57476 2.66336 3.01631 3.43841 3.68295 3.84127 3.94889 4.02122 4.11890 4.18969 4.29685 4.36756 4.50037 4.55081 4.69504 4.71695 4.73012 4.74440 4.75255 4.76839 4.77994 4.78655 4.79990 4.89116 5.04228 5.05396 5.21159 5.24534 5.40777 5.44368 5.48269 5.52112 5.55706 5.59224 5.63726 5.69387 5.79236 6.03454 6.19638 6.57866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.113 4.113 4 C -0.117 4.117 5 C -0.081 4.081 6 C -0.081 4.081 7 O -0.544 6.544 8 Si 0.947 3.053 9 H -0.257 1.257 10 H -0.248 1.248 11 H -0.250 1.250 12 C -0.071 4.071 13 C -0.052 4.052 14 C -0.034 4.034 15 C -0.117 4.117 16 C -0.087 4.087 17 C -0.369 4.369 18 Si 1.058 2.942 19 C -0.449 4.449 20 C -0.449 4.449 21 C -0.449 4.449 22 C -0.088 4.088 23 C -0.115 4.115 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.129 0.871 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.380 0.620 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.121 0.879 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -0.675 1.118 1.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.066 4.066 3 C -0.131 4.131 4 C -0.135 4.135 5 C -0.081 4.081 6 C -0.191 4.191 7 O -0.350 6.350 8 Si 0.770 3.230 9 H -0.181 1.181 10 H -0.171 1.171 11 H -0.173 1.173 12 C -0.089 4.089 13 C -0.052 4.052 14 C -0.034 4.034 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.411 4.411 18 Si 1.250 2.750 19 C -0.557 4.557 20 C -0.557 4.557 21 C -0.557 4.557 22 C -0.106 4.106 23 C -0.133 4.133 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.093 0.907 30 H 0.227 0.773 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.139 0.861 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.555 0.181 1.080 1.228 hybrid contribution 0.658 -0.155 0.047 0.678 sum 0.103 0.026 1.127 1.132 Atomic orbital electron populations 1.20891 0.90783 1.03063 1.02649 1.19994 0.96223 0.92033 0.98346 1.20902 0.93570 0.97705 1.00953 1.21022 0.94844 0.97028 1.00605 1.19138 0.93299 0.93441 1.02188 1.24734 0.94373 1.10099 0.89914 1.86520 1.26555 1.84903 1.37017 0.85740 0.79815 0.75882 0.81597 1.18134 1.17130 1.17313 1.20997 0.92584 0.97741 0.97585 1.18728 0.92738 0.91900 1.01812 1.18722 0.96292 0.92784 0.95652 1.21279 1.00110 0.93903 0.98253 1.21003 0.95340 0.96200 0.97984 1.27392 1.04172 1.12784 0.96742 0.78186 0.66037 0.63482 0.67295 1.26128 1.08767 1.11694 1.09076 1.26135 1.04699 1.06155 1.18712 1.26134 1.17518 1.04881 1.07157 1.21006 0.98333 0.93280 0.97975 1.21286 0.96300 0.97566 0.98117 0.90866 0.91421 0.91007 0.85345 0.86192 0.90676 0.77313 0.85504 0.86267 0.86082 0.91186 0.91098 0.91180 0.91077 0.91007 0.91192 0.91186 0.91008 0.91070 0.86074 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.04 8.57 36.01 0.31 0.27 16 2 C -0.07 -0.14 5.88 -104.29 -0.61 -0.75 16 3 C -0.11 -0.19 9.67 -39.63 -0.38 -0.58 16 4 C -0.12 -0.25 8.66 -39.53 -0.34 -0.59 16 5 C -0.08 -0.20 5.38 -104.67 -0.56 -0.76 16 6 C -0.08 -0.04 2.79 36.01 0.10 0.06 16 7 O -0.54 -0.56 12.81 -35.23 -0.45 -1.01 16 8 Si 0.95 -0.03 25.13 -169.99 -4.27 -4.31 16 9 H -0.26 0.01 7.11 56.52 0.40 0.41 16 10 H -0.25 -0.33 7.04 56.52 0.40 0.07 16 11 H -0.25 -0.13 7.11 56.52 0.40 0.28 16 12 C -0.07 -0.20 9.25 -39.25 -0.36 -0.57 16 13 C -0.05 -0.14 5.41 -104.90 -0.57 -0.71 16 14 C -0.03 -0.08 4.52 -104.90 -0.47 -0.56 16 15 C -0.12 -0.21 9.61 -39.25 -0.38 -0.59 16 16 C -0.09 -0.07 9.28 -39.63 -0.37 -0.44 16 17 C -0.37 -0.07 4.60 -39.52 -0.18 -0.26 16 18 Si 1.06 -2.32 12.31 -169.99 -2.09 -4.41 16 19 C -0.45 0.50 8.65 101.05 0.87 1.37 16 20 C -0.45 0.70 8.52 101.05 0.86 1.56 16 21 C -0.45 0.70 8.52 101.05 0.86 1.57 16 22 C -0.09 -0.07 9.28 -39.63 -0.37 -0.44 16 23 C -0.11 -0.20 8.26 -39.25 -0.32 -0.53 16 24 H 0.07 -0.02 7.55 -51.93 -0.39 -0.42 16 25 H 0.07 -0.05 8.05 -51.93 -0.42 -0.46 16 26 H 0.07 0.06 6.99 -51.93 -0.36 -0.30 16 27 H 0.13 -0.05 8.06 -52.49 -0.42 -0.47 16 28 H 0.12 0.09 4.85 -52.48 -0.25 -0.16 16 29 H 0.08 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.38 -1.33 8.74 45.56 0.40 -0.93 16 31 H 0.13 0.29 8.06 -52.48 -0.42 -0.13 16 32 H 0.12 0.10 8.06 -52.49 -0.42 -0.33 16 33 H 0.12 -0.14 7.40 -52.49 -0.39 -0.52 16 34 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 35 H 0.07 -0.10 7.96 -51.92 -0.41 -0.51 16 36 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 37 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 38 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 39 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 40 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 41 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 42 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 43 H 0.12 -0.14 7.40 -52.49 -0.39 -0.53 16 44 H 0.12 0.11 7.30 -52.49 -0.38 -0.27 16 LS Contribution 359.85 15.07 5.42 5.42 Total: 0.00 -5.41 359.85 -9.67 -15.09 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: -6.36 Total: -8.84 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.92 Total: -1.94 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -0.45 Total: -1.01 kcal Atomic # 14 Polarization: -2.36 SS G_CDS: -6.36 Total: -8.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -5.41 -9.67 -15.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.287 kcal (2) G-P(sol) polarization free energy of solvation -5.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds