Wall clock time and date at job start Mon Mar 8 2021 09:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38001 * 120.06281 * 2 1 4 4 C 1.38333 * 120.11841 * 179.97438 * 3 2 1 5 5 C 1.38294 * 120.24908 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.94450 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47472 * 245.00246 * 6 5 4 8 8 Si 1.86305 * 109.46931 * 4.99745 * 6 5 4 9 9 H 1.48496 * 109.47049 * 180.02562 * 8 6 5 10 10 H 1.48502 * 109.47137 * 300.00087 * 8 6 5 11 11 H 1.48500 * 109.46830 * 60.00208 * 8 6 5 12 12 C 1.38046 * 120.11904 * 0.02562 * 5 4 3 13 13 C 1.39315 * 119.87688 * 359.66470 * 12 5 4 14 14 C 1.48389 * 120.12065 * 180.34277 * 13 12 5 15 15 C 1.39334 * 120.12194 * 55.77064 * 14 13 12 16 16 C 1.38020 * 119.87850 * 179.71593 * 15 14 13 17 17 C 1.38328 * 120.11802 * 0.58056 * 16 15 14 18 18 Si 1.86797 * 119.87562 * 179.69353 * 17 16 15 19 19 C 1.86296 * 109.47168 * 269.97707 * 18 17 16 20 20 C 1.86298 * 109.47165 * 29.98107 * 18 17 16 21 21 C 1.86305 * 109.46694 * 149.97618 * 18 17 16 22 22 C 1.38324 * 120.24143 * 359.67142 * 17 16 15 23 23 C 1.38012 * 120.12567 * 0.04635 * 22 17 16 24 24 H 1.09001 * 109.46939 * 95.36400 * 1 2 3 25 25 H 1.09006 * 109.46557 * 335.36716 * 1 2 3 26 26 H 1.08996 * 109.47053 * 215.36783 * 1 2 3 27 27 H 1.08002 * 119.93453 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.87530 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47443 * 124.99818 * 6 5 4 30 30 H 0.96692 * 114.00486 * 180.02562 * 7 6 5 31 31 H 1.08006 * 120.05881 * 179.97438 * 12 5 4 32 32 H 1.08000 * 120.05823 * 359.97438 * 15 14 13 33 33 H 1.07994 * 119.94367 * 180.27390 * 16 15 14 34 34 H 1.08998 * 109.47416 * 60.00400 * 19 18 17 35 35 H 1.09007 * 109.47091 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47093 * 299.99869 * 19 18 17 37 37 H 1.08993 * 109.47337 * 59.99658 * 20 18 17 38 38 H 1.09007 * 109.46863 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.46954 * 299.99315 * 20 18 17 40 40 H 1.09003 * 109.46900 * 60.00450 * 21 18 17 41 41 H 1.09007 * 109.47073 * 179.97438 * 21 18 17 42 42 H 1.08993 * 109.47349 * 300.00060 * 21 18 17 43 43 H 1.07999 * 119.93718 * 180.02562 * 22 17 16 44 44 H 1.08002 * 120.06564 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1944 0.0000 4 6 3.5817 1.1957 0.0005 5 6 4.2796 0.0017 0.0005 6 6 5.7866 0.0112 0.0017 7 8 6.2675 -0.5546 -1.2192 8 14 6.3964 1.7649 0.1560 9 1 7.8813 1.7743 0.1565 10 1 5.8972 2.5652 -0.9910 11 1 5.8967 2.3528 1.4248 12 6 3.5982 -1.1988 -0.0005 13 6 2.2051 -1.2062 0.0055 14 6 1.4672 -2.4936 0.0120 15 6 1.7119 -3.4347 1.0099 16 6 1.0185 -4.6281 1.0145 17 6 0.0907 -4.8956 0.0241 18 14 -0.8377 -6.5165 0.0320 19 6 0.1135 -7.7818 -0.9501 20 6 -1.0337 -7.1113 1.7866 21 6 -2.5191 -6.2726 -0.7324 22 6 -0.1524 -3.9670 -0.9719 23 6 0.5311 -2.7680 -0.9830 24 1 -0.3633 -0.0961 -1.0232 25 1 -0.3633 0.9342 0.4284 26 1 -0.3633 -0.8380 0.5948 27 1 1.6584 2.1297 0.0004 28 1 4.1188 2.1327 0.0010 29 1 6.1530 -0.5763 0.8435 30 1 7.2316 -0.5811 -1.2875 31 1 4.1442 -2.1307 -0.0009 32 1 2.4399 -3.2290 1.7807 33 1 1.2042 -5.3564 1.7900 34 1 1.0972 -7.9245 -0.5029 35 1 -0.4285 -8.7276 -0.9459 36 1 0.2281 -7.4338 -1.9767 37 1 -1.5902 -6.3709 2.3612 38 1 -1.5759 -8.0569 1.7912 39 1 -0.0500 -7.2539 2.2338 40 1 -2.4045 -5.9246 -1.7590 41 1 -3.0608 -7.2186 -0.7282 42 1 -3.0756 -5.5323 -0.1578 43 1 -0.8781 -4.1808 -1.7426 44 1 0.3408 -2.0439 -1.7613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:15:38 Heat of formation + Delta-G solvation = -28.626398 kcal Electronic energy + Delta-G solvation = -21482.295355 eV Core-core repulsion = 18487.385929 eV Total energy + Delta-G solvation = -2994.909426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10636 -39.43318 -37.68616 -34.43369 -33.24728 -31.83238 -30.11819 -29.35324 -29.15681 -28.27039 -28.26080 -25.27182 -24.44930 -23.36626 -22.41923 -21.12178 -18.51471 -17.91656 -17.28262 -16.80476 -16.37430 -15.88869 -15.56517 -15.47941 -14.81303 -14.64039 -14.44894 -14.35676 -14.22796 -14.03427 -13.93904 -13.71611 -13.52304 -13.38365 -13.18616 -13.11532 -13.09841 -13.02471 -12.95613 -12.75920 -12.28677 -12.18578 -11.96894 -11.83374 -11.69675 -10.92016 -10.74811 -10.74256 -10.36625 -10.13122 -9.79178 -9.66511 -9.21533 -0.11737 0.27237 0.55691 0.58973 1.12885 1.43044 1.47959 1.86731 1.87249 2.04691 2.11204 2.56056 2.68634 2.96389 3.45002 3.59161 3.79296 3.89660 3.92386 4.07797 4.15202 4.23920 4.34405 4.44968 4.53276 4.66961 4.71253 4.73031 4.81405 4.85325 4.85576 4.89631 4.90492 4.91167 4.91496 4.95967 4.99092 5.17031 5.19272 5.29935 5.37224 5.48024 5.53389 5.60460 5.61165 5.68544 5.69259 5.72886 5.92975 6.15655 6.78154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.119 4.119 4 C -0.131 4.131 5 C -0.093 4.093 6 C -0.085 4.085 7 O -0.564 6.564 8 Si 0.983 3.017 9 H -0.253 1.253 10 H -0.269 1.269 11 H -0.257 1.257 12 C -0.086 4.086 13 C -0.062 4.062 14 C -0.049 4.049 15 C -0.132 4.132 16 C -0.096 4.096 17 C -0.380 4.380 18 Si 1.126 2.874 19 C -0.464 4.464 20 C -0.461 4.461 21 C -0.461 4.461 22 C -0.097 4.097 23 C -0.127 4.127 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.148 0.852 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.398 0.602 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 -1.025 1.260 1.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.136 4.136 4 C -0.149 4.149 5 C -0.093 4.093 6 C -0.194 4.194 7 O -0.373 6.373 8 Si 0.807 3.193 9 H -0.178 1.178 10 H -0.194 1.194 11 H -0.181 1.181 12 C -0.104 4.104 13 C -0.062 4.062 14 C -0.049 4.049 15 C -0.150 4.150 16 C -0.114 4.114 17 C -0.419 4.419 18 Si 1.313 2.687 19 C -0.570 4.570 20 C -0.569 4.569 21 C -0.568 4.568 22 C -0.115 4.115 23 C -0.145 4.145 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.166 0.834 28 H 0.148 0.852 29 H 0.110 0.890 30 H 0.248 0.752 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.157 0.843 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.864 -0.168 1.223 1.507 hybrid contribution 0.769 -0.064 -0.014 0.772 sum -0.094 -0.232 1.209 1.235 Atomic orbital electron populations 1.20878 0.89708 1.03375 1.02988 1.20239 0.97149 0.91986 0.98361 1.21195 0.93684 0.98441 1.00303 1.21254 0.95311 0.97408 1.00883 1.19449 0.94595 0.93409 1.01894 1.24840 0.93266 1.11025 0.90299 1.86469 1.28458 1.85039 1.37338 0.85231 0.79501 0.74588 0.80018 1.17758 1.19430 1.18130 1.21091 0.92877 0.97955 0.98503 1.18920 0.92915 0.92510 1.01821 1.18827 0.96834 0.92941 0.96268 1.21447 1.00651 0.94466 0.98457 1.21305 0.95251 0.96186 0.98666 1.28013 1.03918 1.13912 0.96074 0.77179 0.64465 0.60983 0.66084 1.26303 1.08989 1.12519 1.09180 1.26268 1.04895 1.06372 1.19317 1.26262 1.18051 1.05067 1.07428 1.21313 0.98514 0.93004 0.98625 1.21426 0.96586 0.98259 0.98202 0.90265 0.90221 0.91697 0.83425 0.85229 0.89048 0.75214 0.85746 0.86072 0.84358 0.91500 0.90661 0.91515 0.91259 0.90652 0.90982 0.90952 0.90664 0.91203 0.84298 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.14 8.57 71.24 0.61 0.47 16 2 C -0.08 -0.40 5.88 -19.65 -0.12 -0.52 16 3 C -0.12 -0.48 9.67 22.24 0.21 -0.26 16 4 C -0.13 -0.67 8.66 22.31 0.19 -0.47 16 5 C -0.09 -0.57 5.38 -19.90 -0.11 -0.67 16 6 C -0.08 -0.12 2.79 71.24 0.20 0.08 16 7 O -0.56 -1.41 12.81 -148.98 -1.91 -3.32 16 8 Si 0.98 0.05 25.13 68.60 1.72 1.77 16 9 H -0.25 0.18 7.11 99.48 0.71 0.89 16 10 H -0.27 -0.92 7.04 99.48 0.70 -0.22 16 11 H -0.26 -0.28 7.11 99.48 0.71 0.42 16 12 C -0.09 -0.64 9.25 22.48 0.21 -0.43 16 13 C -0.06 -0.44 5.41 -20.04 -0.11 -0.55 16 14 C -0.05 -0.30 4.52 -20.04 -0.09 -0.40 16 15 C -0.13 -0.64 9.61 22.48 0.22 -0.43 16 16 C -0.10 -0.19 9.28 22.24 0.21 0.02 16 17 C -0.38 -0.15 4.60 22.31 0.10 -0.05 16 18 Si 1.13 -5.69 12.31 68.60 0.84 -4.85 16 19 C -0.46 1.25 8.65 113.37 0.98 2.23 16 20 C -0.46 1.78 8.52 113.37 0.97 2.74 16 21 C -0.46 1.83 8.52 113.37 0.97 2.80 16 22 C -0.10 -0.17 9.28 22.24 0.21 0.03 16 23 C -0.13 -0.58 8.26 22.48 0.19 -0.39 16 24 H 0.08 -0.01 7.55 -2.39 -0.02 -0.03 16 25 H 0.08 -0.12 8.05 -2.38 -0.02 -0.13 16 26 H 0.06 0.18 6.99 -2.39 -0.02 0.16 16 27 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 28 H 0.13 0.28 4.85 -2.91 -0.01 0.27 16 29 H 0.09 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.40 -2.77 8.74 -74.06 -0.65 -3.42 16 31 H 0.12 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.12 0.40 8.06 -2.91 -0.02 0.37 16 33 H 0.14 -0.33 7.40 -2.91 -0.02 -0.35 16 34 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 35 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 36 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 37 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 38 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 39 H 0.07 -0.30 7.67 -2.39 -0.02 -0.31 16 40 H 0.07 -0.31 7.67 -2.39 -0.02 -0.33 16 41 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 42 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 43 H 0.14 -0.36 7.40 -2.91 -0.02 -0.38 16 44 H 0.12 0.38 7.30 -2.91 -0.02 0.36 16 Total: 0.00 -12.82 359.85 6.57 -6.25 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: 1.08 Total: -4.04 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 4.83 Total: 4.20 kcal Atomic # 8 Polarization: -1.41 SS G_CDS: -1.91 Total: -3.32 kcal Atomic # 14 Polarization: -5.65 SS G_CDS: 2.57 Total: -3.08 kcal Total: -12.82 6.57 -6.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.381 kcal (2) G-P(sol) polarization free energy of solvation -12.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds