Wall clock time and date at job start Mon Mar 8 2021 09:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37999 * 120.05872 * 2 1 4 4 C 1.38348 * 120.12189 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.87817 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47486 * 299.99965 * 5 4 3 7 7 Si 1.86306 * 109.46994 * 180.02562 * 5 4 3 8 8 H 1.48499 * 109.47137 * 60.00051 * 7 5 4 9 9 H 1.48504 * 109.46807 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46775 * 299.99805 * 7 5 4 11 11 C 1.38299 * 120.23850 * 359.97438 * 4 3 2 12 12 C 1.38036 * 120.12622 * 359.97438 * 11 4 3 13 13 C 1.39318 * 119.87660 * 359.78711 * 12 11 4 14 14 C 1.48389 * 120.12418 * 180.25931 * 13 12 11 15 15 C 1.39337 * 120.12041 * 55.76857 * 14 13 12 16 16 C 1.38018 * 119.87883 * 179.72015 * 15 14 13 17 17 C 1.38328 * 120.11618 * 0.58051 * 16 15 14 18 18 Si 1.86796 * 119.87426 * 179.69464 * 17 16 15 19 19 C 1.86296 * 109.47438 * 269.97814 * 18 17 16 20 20 C 1.86304 * 109.47313 * 29.97991 * 18 17 16 21 21 C 1.86301 * 109.47150 * 149.97946 * 18 17 16 22 22 C 1.38320 * 120.24678 * 359.67753 * 17 16 15 23 23 C 1.38015 * 120.11904 * 0.03798 * 22 17 16 24 24 H 1.09005 * 109.47187 * 95.36853 * 1 2 3 25 25 H 1.09004 * 109.47619 * 335.36958 * 1 2 3 26 26 H 1.09000 * 109.47330 * 215.36652 * 1 2 3 27 27 H 1.07995 * 119.94143 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47660 * 60.00013 * 5 4 3 29 29 H 0.96707 * 113.99733 * 300.00188 * 6 5 4 30 30 H 1.07999 * 119.93643 * 180.02562 * 11 4 3 31 31 H 1.07996 * 120.06411 * 180.02562 * 12 11 4 32 32 H 1.08000 * 120.05975 * 359.97438 * 15 14 13 33 33 H 1.07997 * 119.94355 * 180.27269 * 16 15 14 34 34 H 1.08998 * 109.47306 * 60.00001 * 19 18 17 35 35 H 1.09006 * 109.47553 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47504 * 300.00356 * 19 18 17 37 37 H 1.09000 * 109.46862 * 59.99818 * 20 18 17 38 38 H 1.09007 * 109.47027 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.46791 * 299.99607 * 20 18 17 40 40 H 1.09009 * 109.47121 * 59.99712 * 21 18 17 41 41 H 1.08994 * 109.47761 * 180.02562 * 21 18 17 42 42 H 1.09000 * 109.47126 * 300.00244 * 21 18 17 43 43 H 1.07991 * 119.94260 * 180.02562 * 22 17 16 44 44 H 1.08005 * 120.06241 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1944 0.0000 4 6 3.5817 1.1959 -0.0005 5 6 4.3309 2.5034 -0.0011 6 8 3.9829 3.2514 -1.1679 7 14 6.1637 2.1688 -0.0025 8 1 6.5240 1.3913 -1.2153 9 1 6.9020 3.4573 -0.0025 10 1 6.5258 1.3913 1.2097 11 6 4.2795 0.0019 -0.0005 12 6 3.5982 -1.1987 0.0005 13 6 2.2051 -1.2061 0.0061 14 6 1.4672 -2.4935 0.0131 15 6 1.7117 -3.4341 1.0115 16 6 1.0184 -4.6275 1.0165 17 6 0.0909 -4.8955 0.0258 18 14 -0.8375 -6.5164 0.0343 19 6 0.1141 -7.7823 -0.9469 20 6 -1.0339 -7.1105 1.7892 21 6 -2.5186 -6.2733 -0.7308 22 6 -0.1519 -3.9676 -0.9708 23 6 0.5315 -2.7686 -0.9821 24 1 -0.3634 -0.0962 -1.0232 25 1 -0.3634 0.9342 0.4283 26 1 -0.3634 -0.8380 0.5948 27 1 1.6582 2.1297 0.0004 28 1 4.0661 3.0744 0.8888 29 1 4.1908 2.8030 -1.9991 30 1 5.3594 0.0088 -0.0005 31 1 4.1441 -2.1305 0.0009 32 1 2.4394 -3.2280 1.7824 33 1 1.2039 -5.3555 1.7924 34 1 1.0977 -7.9246 -0.4993 35 1 -0.4278 -8.7281 -0.9423 36 1 0.2291 -7.4348 -1.9736 37 1 -1.5907 -6.3698 2.3632 38 1 -1.5761 -8.0561 1.7941 39 1 -0.0504 -7.2528 2.2368 40 1 -2.4037 -5.9257 -1.7576 41 1 -3.0605 -7.2189 -0.7255 42 1 -3.0754 -5.5326 -0.1568 43 1 -0.8774 -4.1818 -1.7415 44 1 0.3409 -2.0445 -1.7604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:16:36 Heat of formation + Delta-G solvation = -41.254563 kcal Electronic energy + Delta-G solvation = -21390.136529 eV Core-core repulsion = 18394.679504 eV Total energy + Delta-G solvation = -2995.457025 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08640 -39.50152 -37.62201 -34.30620 -33.19340 -31.80501 -30.55552 -29.49520 -28.46080 -28.41935 -28.09018 -26.53913 -23.72210 -23.14608 -22.53003 -21.21681 -18.51632 -18.01008 -16.80593 -16.54712 -16.27038 -16.04543 -15.64819 -15.56946 -15.04434 -14.60967 -14.55516 -14.25256 -14.20281 -14.08354 -14.06752 -13.84218 -13.64868 -13.57631 -13.27094 -13.25263 -13.11362 -13.05684 -12.88994 -12.63207 -12.30180 -12.18639 -11.96241 -11.94796 -11.55848 -11.04329 -10.91244 -10.80488 -10.44078 -10.01451 -9.76908 -9.70180 -9.15454 -0.09457 0.40628 0.58142 0.59456 1.14637 1.42718 1.50409 1.71850 1.84544 1.90214 1.94949 2.54507 2.65009 2.98142 3.43661 3.62367 3.75829 3.86360 3.95243 4.08156 4.14764 4.28569 4.43463 4.49755 4.54407 4.66243 4.69169 4.70431 4.71589 4.72401 4.74311 4.74981 4.75725 4.76716 4.85229 4.98732 5.01680 5.18089 5.20791 5.32609 5.42344 5.45394 5.49948 5.52510 5.53361 5.59136 5.65271 5.74476 5.98921 6.14873 6.53196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.070 4.070 3 C -0.090 4.090 4 C -0.115 4.115 5 C -0.081 4.081 6 O -0.538 6.538 7 Si 0.950 3.050 8 H -0.252 1.252 9 H -0.254 1.254 10 H -0.251 1.251 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.046 4.046 14 C -0.037 4.037 15 C -0.117 4.117 16 C -0.087 4.087 17 C -0.368 4.368 18 Si 1.059 2.941 19 C -0.449 4.449 20 C -0.450 4.450 21 C -0.449 4.449 22 C -0.088 4.088 23 C -0.115 4.115 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.376 0.624 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.122 0.878 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -2.030 -0.096 2.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 C -0.108 4.108 4 C -0.115 4.115 5 C -0.191 4.191 6 O -0.343 6.343 7 Si 0.773 3.227 8 H -0.175 1.175 9 H -0.178 1.178 10 H -0.175 1.175 11 C -0.148 4.148 12 C -0.115 4.115 13 C -0.046 4.046 14 C -0.037 4.037 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.410 4.410 18 Si 1.250 2.750 19 C -0.557 4.557 20 C -0.557 4.557 21 C -0.557 4.557 22 C -0.106 4.106 23 C -0.133 4.133 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.136 0.864 29 H 0.223 0.777 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.140 0.860 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.129 -1.703 0.352 1.743 hybrid contribution -0.104 -0.183 -0.348 0.406 sum -0.233 -1.885 0.004 1.900 Atomic orbital electron populations 1.20883 0.90758 1.03088 1.02627 1.20006 0.96248 0.91983 0.98724 1.20837 0.93147 0.97618 0.99183 1.20337 0.94747 0.94835 1.01610 1.24986 1.09876 0.92308 0.91953 1.86515 1.86920 1.45585 1.15311 0.85671 0.74693 0.80527 0.81773 1.17519 1.17847 1.17480 1.20937 0.99418 0.92383 1.02025 1.21115 0.93050 0.97962 0.99328 1.18753 0.92822 0.91876 1.01177 1.18740 0.96439 0.92815 0.95719 1.21286 1.00133 0.93889 0.98225 1.21013 0.95320 0.96217 0.97977 1.27402 1.04108 1.12814 0.96694 0.78184 0.66040 0.63442 0.67307 1.26129 1.08766 1.11725 1.09044 1.26138 1.04707 1.06173 1.18707 1.26135 1.17507 1.04908 1.07154 1.21011 0.98310 0.93288 0.97989 1.21285 0.96276 0.97544 0.98159 0.90892 0.91390 0.91051 0.85250 0.86409 0.77651 0.86145 0.85528 0.86243 0.86055 0.91196 0.91072 0.91191 0.91069 0.90986 0.91196 0.91185 0.90986 0.91065 0.86047 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.02 8.57 36.00 0.31 0.29 16 2 C -0.07 -0.11 5.88 -104.30 -0.61 -0.72 16 3 C -0.09 -0.12 9.23 -39.63 -0.37 -0.49 16 4 C -0.11 -0.12 5.39 -104.56 -0.56 -0.68 16 5 C -0.08 0.00 2.82 36.00 0.10 0.10 16 6 O -0.54 -0.33 12.76 -35.23 -0.45 -0.78 16 7 Si 0.95 -0.21 25.06 -169.99 -4.26 -4.47 16 8 H -0.25 0.00 7.11 56.52 0.40 0.40 16 9 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 10 H -0.25 -0.09 7.11 56.52 0.40 0.32 16 11 C -0.13 -0.14 8.65 -39.63 -0.34 -0.48 16 12 C -0.10 -0.14 9.61 -39.25 -0.38 -0.52 16 13 C -0.05 -0.09 5.41 -104.90 -0.57 -0.65 16 14 C -0.04 -0.06 4.52 -104.90 -0.47 -0.54 16 15 C -0.12 -0.15 9.61 -39.25 -0.38 -0.53 16 16 C -0.09 -0.03 9.28 -39.63 -0.37 -0.40 16 17 C -0.37 0.08 4.60 -39.52 -0.18 -0.10 16 18 Si 1.06 -2.64 12.31 -169.99 -2.09 -4.74 16 19 C -0.45 0.64 8.65 101.05 0.87 1.52 16 20 C -0.45 0.79 8.52 101.05 0.86 1.65 16 21 C -0.45 0.82 8.52 101.05 0.86 1.68 16 22 C -0.09 -0.02 9.28 -39.63 -0.37 -0.39 16 23 C -0.11 -0.13 8.26 -39.25 -0.32 -0.45 16 24 H 0.07 -0.04 7.55 -51.93 -0.39 -0.43 16 25 H 0.07 -0.04 8.05 -51.93 -0.42 -0.46 16 26 H 0.07 0.05 6.99 -51.93 -0.36 -0.31 16 27 H 0.13 0.08 8.06 -52.49 -0.42 -0.34 16 28 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.38 -0.92 8.70 45.56 0.40 -0.53 16 30 H 0.12 -0.02 4.86 -52.49 -0.26 -0.28 16 31 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 32 H 0.12 0.04 8.06 -52.49 -0.42 -0.38 16 33 H 0.12 -0.18 7.40 -52.49 -0.39 -0.56 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.13 7.96 -51.92 -0.41 -0.55 16 39 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 40 H 0.07 -0.14 7.67 -51.92 -0.40 -0.54 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 43 H 0.12 -0.19 7.40 -52.49 -0.39 -0.58 16 44 H 0.12 0.03 7.30 -52.48 -0.38 -0.35 16 LS Contribution 359.73 15.07 5.42 5.42 Total: 0.00 -4.67 359.73 -9.66 -14.33 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: -6.36 Total: -9.04 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.92 Total: -0.72 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -0.45 Total: -0.78 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: -6.35 Total: -9.21 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -4.67 -9.66 -14.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.928 kcal (2) G-P(sol) polarization free energy of solvation -4.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds