Wall clock time and date at job start Mon Mar 8 2021 09:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37999 * 120.05872 * 2 1 4 4 C 1.38348 * 120.12189 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.87817 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47486 * 299.99965 * 5 4 3 7 7 Si 1.86306 * 109.46994 * 180.02562 * 5 4 3 8 8 H 1.48499 * 109.47137 * 60.00051 * 7 5 4 9 9 H 1.48504 * 109.46807 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46775 * 299.99805 * 7 5 4 11 11 C 1.38299 * 120.23850 * 359.97438 * 4 3 2 12 12 C 1.38036 * 120.12622 * 359.97438 * 11 4 3 13 13 C 1.39318 * 119.87660 * 359.78711 * 12 11 4 14 14 C 1.48389 * 120.12418 * 180.25931 * 13 12 11 15 15 C 1.39337 * 120.12041 * 55.76857 * 14 13 12 16 16 C 1.38018 * 119.87883 * 179.72015 * 15 14 13 17 17 C 1.38328 * 120.11618 * 0.58051 * 16 15 14 18 18 Si 1.86796 * 119.87426 * 179.69464 * 17 16 15 19 19 C 1.86296 * 109.47438 * 269.97814 * 18 17 16 20 20 C 1.86304 * 109.47313 * 29.97991 * 18 17 16 21 21 C 1.86301 * 109.47150 * 149.97946 * 18 17 16 22 22 C 1.38320 * 120.24678 * 359.67753 * 17 16 15 23 23 C 1.38015 * 120.11904 * 0.03798 * 22 17 16 24 24 H 1.09005 * 109.47187 * 95.36853 * 1 2 3 25 25 H 1.09004 * 109.47619 * 335.36958 * 1 2 3 26 26 H 1.09000 * 109.47330 * 215.36652 * 1 2 3 27 27 H 1.07995 * 119.94143 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47660 * 60.00013 * 5 4 3 29 29 H 0.96707 * 113.99733 * 300.00188 * 6 5 4 30 30 H 1.07999 * 119.93643 * 180.02562 * 11 4 3 31 31 H 1.07996 * 120.06411 * 180.02562 * 12 11 4 32 32 H 1.08000 * 120.05975 * 359.97438 * 15 14 13 33 33 H 1.07997 * 119.94355 * 180.27269 * 16 15 14 34 34 H 1.08998 * 109.47306 * 60.00001 * 19 18 17 35 35 H 1.09006 * 109.47553 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47504 * 300.00356 * 19 18 17 37 37 H 1.09000 * 109.46862 * 59.99818 * 20 18 17 38 38 H 1.09007 * 109.47027 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.46791 * 299.99607 * 20 18 17 40 40 H 1.09009 * 109.47121 * 59.99712 * 21 18 17 41 41 H 1.08994 * 109.47761 * 180.02562 * 21 18 17 42 42 H 1.09000 * 109.47126 * 300.00244 * 21 18 17 43 43 H 1.07991 * 119.94260 * 180.02562 * 22 17 16 44 44 H 1.08005 * 120.06241 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1944 0.0000 4 6 3.5817 1.1959 -0.0005 5 6 4.3309 2.5034 -0.0011 6 8 3.9829 3.2514 -1.1679 7 14 6.1637 2.1688 -0.0025 8 1 6.5240 1.3913 -1.2153 9 1 6.9020 3.4573 -0.0025 10 1 6.5258 1.3913 1.2097 11 6 4.2795 0.0019 -0.0005 12 6 3.5982 -1.1987 0.0005 13 6 2.2051 -1.2061 0.0061 14 6 1.4672 -2.4935 0.0131 15 6 1.7117 -3.4341 1.0115 16 6 1.0184 -4.6275 1.0165 17 6 0.0909 -4.8955 0.0258 18 14 -0.8375 -6.5164 0.0343 19 6 0.1141 -7.7823 -0.9469 20 6 -1.0339 -7.1105 1.7892 21 6 -2.5186 -6.2733 -0.7308 22 6 -0.1519 -3.9676 -0.9708 23 6 0.5315 -2.7686 -0.9821 24 1 -0.3634 -0.0962 -1.0232 25 1 -0.3634 0.9342 0.4283 26 1 -0.3634 -0.8380 0.5948 27 1 1.6582 2.1297 0.0004 28 1 4.0661 3.0744 0.8888 29 1 4.1908 2.8030 -1.9991 30 1 5.3594 0.0088 -0.0005 31 1 4.1441 -2.1305 0.0009 32 1 2.4394 -3.2280 1.7824 33 1 1.2039 -5.3555 1.7924 34 1 1.0977 -7.9246 -0.4993 35 1 -0.4278 -8.7281 -0.9423 36 1 0.2291 -7.4348 -1.9736 37 1 -1.5907 -6.3698 2.3632 38 1 -1.5761 -8.0561 1.7941 39 1 -0.0504 -7.2528 2.2368 40 1 -2.4037 -5.9257 -1.7576 41 1 -3.0605 -7.2189 -0.7255 42 1 -3.0754 -5.5326 -0.1568 43 1 -0.8774 -4.1818 -1.7415 44 1 0.3409 -2.0445 -1.7604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:16:35 Heat of formation + Delta-G solvation = -29.651934 kcal Electronic energy + Delta-G solvation = -21389.633401 eV Core-core repulsion = 18394.679504 eV Total energy + Delta-G solvation = -2994.953897 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12830 -39.51116 -37.63855 -34.34087 -33.23431 -31.80623 -30.56563 -29.34999 -28.30660 -28.26530 -28.11115 -26.56139 -23.75264 -23.15879 -22.56829 -21.25672 -18.54275 -18.02032 -16.84394 -16.54873 -16.28583 -16.07642 -15.67247 -15.57195 -15.08960 -14.62015 -14.53367 -14.22927 -14.12518 -14.05437 -13.94433 -13.72118 -13.61634 -13.52659 -13.12420 -13.10666 -13.04713 -12.97032 -12.91857 -12.62821 -12.33890 -12.20089 -12.00149 -11.93629 -11.59293 -10.91686 -10.74787 -10.74544 -10.45544 -10.04214 -9.79795 -9.76738 -9.19265 -0.14221 0.32789 0.55674 0.56294 1.15287 1.43090 1.49355 1.86675 1.88105 2.04003 2.10824 2.58982 2.68246 2.97019 3.46964 3.60903 3.72699 3.83307 3.91266 4.08568 4.15225 4.24230 4.40146 4.51306 4.55740 4.67788 4.71670 4.72662 4.80830 4.84971 4.85123 4.89043 4.89933 4.90554 4.91100 4.96283 4.98451 5.18018 5.18985 5.27430 5.40039 5.47480 5.53394 5.60171 5.61276 5.68151 5.69361 5.72598 5.93202 6.15519 6.66337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.078 4.078 3 C -0.098 4.098 4 C -0.117 4.117 5 C -0.079 4.079 6 O -0.552 6.552 7 Si 0.983 3.017 8 H -0.253 1.253 9 H -0.274 1.274 10 H -0.258 1.258 11 C -0.137 4.137 12 C -0.106 4.106 13 C -0.057 4.057 14 C -0.049 4.049 15 C -0.132 4.132 16 C -0.097 4.097 17 C -0.379 4.379 18 Si 1.126 2.874 19 C -0.463 4.463 20 C -0.462 4.462 21 C -0.461 4.461 22 C -0.097 4.097 23 C -0.126 4.126 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.135 0.865 28 H 0.124 0.876 29 H 0.388 0.612 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.139 0.861 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 -2.532 -0.207 2.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C -0.116 4.116 4 C -0.118 4.118 5 C -0.189 4.189 6 O -0.359 6.359 7 Si 0.808 3.192 8 H -0.177 1.177 9 H -0.200 1.200 10 H -0.182 1.182 11 C -0.155 4.155 12 C -0.124 4.124 13 C -0.057 4.057 14 C -0.049 4.049 15 C -0.150 4.150 16 C -0.115 4.115 17 C -0.419 4.419 18 Si 1.313 2.687 19 C -0.570 4.570 20 C -0.569 4.569 21 C -0.569 4.569 22 C -0.115 4.115 23 C -0.144 4.144 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.153 0.847 28 H 0.142 0.858 29 H 0.237 0.763 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.155 0.845 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.157 0.843 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.507 -2.203 0.231 2.272 hybrid contribution 0.019 -0.034 -0.322 0.325 sum -0.488 -2.237 -0.091 2.291 Atomic orbital electron populations 1.20867 0.90025 1.03137 1.02965 1.20195 0.96949 0.92015 0.98686 1.20971 0.93468 0.97793 0.99412 1.20474 0.94777 0.95260 1.01265 1.25028 1.09870 0.91880 0.92142 1.86483 1.87082 1.46180 1.16108 0.85202 0.73842 0.79016 0.81156 1.17722 1.19982 1.18235 1.21104 1.00024 0.92338 1.02010 1.21290 0.93163 0.98515 0.99395 1.18906 0.93142 0.92209 1.01455 1.18835 0.96932 0.92955 0.96225 1.21453 1.00675 0.94423 0.98449 1.21302 0.95288 0.96264 0.98634 1.27977 1.03894 1.13893 0.96107 0.77167 0.64457 0.61072 0.65983 1.26298 1.08982 1.12486 1.09187 1.26284 1.04871 1.06345 1.19440 1.26270 1.18095 1.05039 1.07454 1.21313 0.98511 0.93074 0.98603 1.21430 0.96501 0.98163 0.98270 0.90234 0.90684 0.91714 0.84744 0.85789 0.76260 0.85123 0.84816 0.86014 0.84469 0.91478 0.90720 0.91450 0.91314 0.90703 0.90993 0.90911 0.90713 0.91257 0.84348 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.11 8.57 71.23 0.61 0.50 16 2 C -0.08 -0.30 5.88 -19.65 -0.12 -0.42 16 3 C -0.10 -0.32 9.23 22.24 0.21 -0.12 16 4 C -0.12 -0.28 5.39 -19.83 -0.11 -0.39 16 5 C -0.08 0.00 2.82 71.23 0.20 0.20 16 6 O -0.55 -0.67 12.76 -148.98 -1.90 -2.57 16 7 Si 0.98 -0.32 25.06 68.60 1.72 1.40 16 8 H -0.25 0.04 7.11 99.48 0.71 0.75 16 9 H -0.27 -0.81 7.11 99.48 0.71 -0.10 16 10 H -0.26 -0.19 7.11 99.48 0.71 0.52 16 11 C -0.14 -0.36 8.65 22.24 0.19 -0.17 16 12 C -0.11 -0.39 9.61 22.48 0.22 -0.18 16 13 C -0.06 -0.27 5.41 -20.04 -0.11 -0.38 16 14 C -0.05 -0.22 4.52 -20.04 -0.09 -0.31 16 15 C -0.13 -0.45 9.61 22.48 0.22 -0.24 16 16 C -0.10 -0.09 9.28 22.24 0.21 0.11 16 17 C -0.38 0.22 4.60 22.31 0.10 0.32 16 18 Si 1.13 -6.38 12.31 68.60 0.84 -5.53 16 19 C -0.46 1.57 8.65 113.37 0.98 2.55 16 20 C -0.46 1.93 8.52 113.37 0.97 2.90 16 21 C -0.46 2.04 8.52 113.37 0.97 3.00 16 22 C -0.10 -0.06 9.28 22.24 0.21 0.15 16 23 C -0.13 -0.37 8.26 22.48 0.19 -0.18 16 24 H 0.08 -0.05 7.55 -2.38 -0.02 -0.07 16 25 H 0.07 -0.06 8.05 -2.38 -0.02 -0.08 16 26 H 0.06 0.15 6.99 -2.39 -0.02 0.13 16 27 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 28 H 0.12 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.39 -1.90 8.70 -74.05 -0.64 -2.55 16 30 H 0.13 -0.03 4.86 -2.91 -0.01 -0.04 16 31 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 32 H 0.12 0.23 8.06 -2.91 -0.02 0.20 16 33 H 0.14 -0.43 7.40 -2.91 -0.02 -0.45 16 34 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 35 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 36 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 37 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 38 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 39 H 0.07 -0.32 7.67 -2.39 -0.02 -0.34 16 40 H 0.07 -0.35 7.67 -2.38 -0.02 -0.37 16 41 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 42 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 43 H 0.14 -0.50 7.40 -2.92 -0.02 -0.53 16 44 H 0.12 0.16 7.30 -2.91 -0.02 0.14 16 Total: 0.00 -10.53 359.73 6.58 -3.95 By element: Atomic # 1 Polarization: -5.69 SS G_CDS: 1.09 Total: -4.60 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 4.83 Total: 7.35 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -1.90 Total: -2.57 kcal Atomic # 14 Polarization: -6.69 SS G_CDS: 2.56 Total: -4.13 kcal Total: -10.53 6.58 -3.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.704 kcal (2) G-P(sol) polarization free energy of solvation -10.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds