Wall clock time and date at job start Mon Mar 8 2021 09:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00037 * 2 1 4 4 C 1.38791 * 119.99500 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.19159 * 180.02562 * 4 3 2 6 6 C 1.38034 * 120.17626 * 359.68417 * 5 4 3 7 7 C 1.50700 * 120.00539 * 180.30036 * 6 5 4 8 8 O 1.42900 * 109.47550 * 105.35939 * 7 6 5 9 9 Si 1.86300 * 109.47318 * 345.35787 * 7 6 5 10 10 H 1.48506 * 109.46917 * 60.00112 * 9 7 6 11 11 H 1.48490 * 109.47634 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47379 * 300.00786 * 9 7 6 13 13 C 1.39373 * 119.98969 * 0.57164 * 6 5 4 14 14 C 1.48394 * 120.09672 * 179.72280 * 13 6 5 15 15 C 1.39337 * 120.11739 * 303.10163 * 14 13 6 16 16 C 1.38025 * 119.87740 * 179.97438 * 15 14 13 17 17 C 1.38324 * 120.12146 * 0.02562 * 16 15 14 18 18 Si 1.86795 * 119.87941 * 179.97438 * 17 16 15 19 19 C 1.86301 * 109.46695 * 269.97443 * 18 17 16 20 20 C 1.86298 * 109.47273 * 29.97445 * 18 17 16 21 21 C 1.86297 * 109.47232 * 149.97948 * 18 17 16 22 22 C 1.38329 * 120.23966 * 359.95473 * 17 16 15 23 23 C 1.38015 * 120.12499 * 0.04512 * 22 17 16 24 24 C 1.38542 * 119.99734 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46928 * 299.99769 * 1 2 3 27 27 H 1.08997 * 109.47480 * 60.00459 * 1 2 3 28 28 H 1.07998 * 119.90336 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.91586 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.47159 * 225.36173 * 7 6 5 31 31 H 0.96703 * 113.99762 * 300.00467 * 8 7 6 32 32 H 1.07999 * 120.06294 * 359.70107 * 15 14 13 33 33 H 1.07999 * 119.93940 * 179.97438 * 16 15 14 34 34 H 1.09006 * 109.47289 * 60.00241 * 19 18 17 35 35 H 1.09003 * 109.46996 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47637 * 300.00030 * 19 18 17 37 37 H 1.09000 * 109.46935 * 60.00204 * 20 18 17 38 38 H 1.09003 * 109.47144 * 180.02562 * 20 18 17 39 39 H 1.09001 * 109.46766 * 300.00289 * 20 18 17 40 40 H 1.08992 * 109.47529 * 59.99568 * 21 18 17 41 41 H 1.09003 * 109.47311 * 180.02562 * 21 18 17 42 42 H 1.09000 * 109.46916 * 299.99759 * 21 18 17 43 43 H 1.08004 * 119.93435 * 180.02562 * 22 17 16 44 44 H 1.07992 * 120.06360 * 179.97438 * 23 22 17 45 45 H 1.08001 * 120.08994 * 359.97220 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2900 2.3748 0.0005 5 6 1.9134 3.6087 0.0000 6 6 3.2913 3.6899 0.0055 7 6 3.9668 5.0371 0.0118 8 8 4.4944 5.2995 1.3136 9 14 2.7278 6.3552 -0.4334 10 1 1.6227 6.3510 0.5586 11 1 3.3935 7.6825 -0.4279 12 1 2.1795 6.0826 -1.7863 13 6 4.0578 2.5259 -0.0004 14 6 5.5393 2.6105 -0.0007 15 6 6.1993 3.3123 -1.0074 16 6 7.5775 3.3883 -1.0025 17 6 8.3033 2.7688 -0.0011 18 14 10.1682 2.8753 -0.0016 19 6 10.8715 1.4458 -0.9674 20 6 10.6986 4.4780 -0.7895 21 6 10.7945 2.8081 1.7517 22 6 7.6531 2.0711 1.0009 23 6 6.2754 1.9888 1.0058 24 6 3.4295 1.2833 -0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2116 2.3164 0.0014 29 1 1.3207 4.5116 0.0000 30 1 4.7780 5.0401 -0.7164 31 1 3.8270 5.3116 2.0133 32 1 5.6339 3.7923 -1.7924 33 1 8.0901 3.9316 -1.7825 34 1 10.5051 1.4851 -1.9932 35 1 11.9598 1.5082 -0.9680 36 1 10.5613 0.5081 -0.5064 37 1 10.2871 5.3143 -0.2244 38 1 11.7868 4.5399 -0.7902 39 1 10.3321 4.5172 -1.8153 40 1 10.4843 1.8705 2.2127 41 1 11.8828 2.8707 1.7515 42 1 10.3830 3.6444 2.3168 43 1 8.2247 1.5897 1.7806 44 1 5.7689 1.4435 1.7883 45 1 4.0191 0.3784 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:17:22 Heat of formation + Delta-G solvation = -64.974653 kcal Electronic energy + Delta-G solvation = -24009.912445 eV Core-core repulsion = 20694.744648 eV Total energy + Delta-G solvation = -3315.167797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45316 -39.98476 -38.68846 -37.07984 -33.47670 -32.31862 -31.63892 -30.04711 -29.37478 -28.46728 -28.36067 -28.34933 -26.19954 -24.34223 -23.22845 -22.57202 -21.60658 -19.19423 -18.27347 -17.34452 -17.27132 -16.76465 -16.60447 -16.25610 -15.86180 -15.50568 -15.36435 -14.95247 -14.65191 -14.42365 -14.22492 -14.12165 -14.01006 -13.79090 -13.73414 -13.64518 -13.39368 -13.34714 -13.19943 -13.12170 -13.04093 -12.76054 -12.28545 -12.24027 -12.04278 -11.95808 -11.82066 -11.51463 -10.97223 -10.83934 -10.71627 -10.33198 -10.12533 -9.63157 -9.37079 -9.05714 -0.04098 0.31423 0.65660 0.68997 1.15828 1.39137 1.50973 1.80188 1.90529 1.92071 2.02482 2.25049 2.61541 2.62270 3.07642 3.54265 3.64728 3.70581 3.84685 4.07767 4.12648 4.13617 4.16883 4.23324 4.41747 4.42799 4.51635 4.60428 4.67338 4.74583 4.76094 4.77845 4.81286 4.81913 4.82008 4.83518 4.93984 5.04845 5.19252 5.26940 5.28881 5.42261 5.48234 5.51121 5.57604 5.59203 5.73937 5.74772 5.79021 6.24759 6.36061 6.62985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.136 3.864 4 C -0.203 4.203 5 C -0.085 4.085 6 C -0.145 4.145 7 C -0.078 4.078 8 O -0.531 6.531 9 Si 0.941 3.059 10 H -0.252 1.252 11 H -0.252 1.252 12 H -0.249 1.249 13 C 0.019 3.981 14 C -0.030 4.030 15 C -0.116 4.116 16 C -0.086 4.086 17 C -0.367 4.367 18 Si 1.058 2.942 19 C -0.449 4.449 20 C -0.449 4.449 21 C -0.449 4.449 22 C -0.086 4.086 23 C -0.110 4.110 24 C -0.139 4.139 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.372 0.628 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -0.065 -0.113 1.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.091 3.909 4 C -0.221 4.221 5 C -0.103 4.103 6 C -0.145 4.145 7 C -0.189 4.189 8 O -0.335 6.335 9 Si 0.764 3.236 10 H -0.176 1.176 11 H -0.176 1.176 12 H -0.172 1.172 13 C 0.019 3.981 14 C -0.030 4.030 15 C -0.133 4.133 16 C -0.104 4.104 17 C -0.409 4.409 18 Si 1.250 2.750 19 C -0.556 4.556 20 C -0.557 4.557 21 C -0.557 4.557 22 C -0.104 4.104 23 C -0.128 4.128 24 C -0.157 4.157 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.219 0.781 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.428 0.401 -0.674 1.629 hybrid contribution -0.891 -0.341 0.409 1.038 sum -2.319 0.060 -0.265 2.334 Atomic orbital electron populations 1.23118 0.77928 1.04364 1.01521 1.86101 1.21733 1.26611 1.88402 1.18935 0.92120 0.84337 0.95509 1.21225 1.00309 0.91963 1.08623 1.20827 0.93706 0.97583 0.98143 1.20203 0.93084 0.95527 1.05733 1.25052 1.06109 0.98029 0.89710 1.86568 1.37490 1.93713 1.15739 0.85839 0.77727 0.78723 0.81300 1.17577 1.17553 1.17218 1.18387 0.92038 0.91381 0.96293 1.18579 0.90549 0.98121 0.95776 1.21185 0.94815 0.99202 0.98148 1.20968 0.93428 0.97999 0.98037 1.27368 1.16979 0.99909 0.96617 0.78184 0.62219 0.67297 0.67288 1.26130 1.06538 1.14068 1.08906 1.26133 1.05751 1.16502 1.07311 1.26134 1.06248 1.04595 1.18733 1.20978 0.93884 0.97610 0.97885 1.21200 0.94276 0.99446 0.97868 1.20493 0.91340 0.97924 1.05982 0.87916 0.92438 0.92424 0.84996 0.85534 0.86351 0.78129 0.86259 0.86068 0.91202 0.91134 0.91196 0.90998 0.91058 0.91207 0.91209 0.91061 0.91019 0.86129 0.86334 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.68 10.49 -19.43 -0.20 -0.88 16 3 C 0.14 0.31 6.68 -39.26 -0.26 0.05 16 4 C -0.20 -0.20 9.03 -39.37 -0.36 -0.56 16 5 C -0.08 -0.08 8.65 -39.65 -0.34 -0.42 16 6 C -0.14 -0.23 5.27 -104.27 -0.55 -0.77 16 7 C -0.08 -0.06 2.07 36.01 0.07 0.01 16 8 O -0.53 -0.76 12.82 -35.23 -0.45 -1.22 16 9 Si 0.94 0.04 25.48 -169.99 -4.33 -4.29 16 10 H -0.25 0.06 6.74 56.52 0.38 0.44 16 11 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 12 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 13 C 0.02 0.05 5.39 -104.92 -0.57 -0.52 16 14 C -0.03 -0.08 4.85 -104.90 -0.51 -0.58 16 15 C -0.12 -0.22 7.93 -39.25 -0.31 -0.53 16 16 C -0.09 -0.09 9.28 -39.63 -0.37 -0.46 16 17 C -0.37 -0.23 4.60 -39.52 -0.18 -0.41 16 18 Si 1.06 -1.93 12.31 -169.99 -2.09 -4.03 16 19 C -0.45 0.43 8.65 101.05 0.87 1.30 16 20 C -0.45 0.53 8.52 101.05 0.86 1.39 16 21 C -0.45 0.49 8.52 101.05 0.86 1.36 16 22 C -0.09 -0.11 9.28 -39.63 -0.37 -0.48 16 23 C -0.11 -0.24 9.63 -39.25 -0.38 -0.62 16 24 C -0.14 -0.35 9.56 -39.10 -0.37 -0.73 16 25 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 26 H 0.06 -0.13 7.66 -51.93 -0.40 -0.53 16 27 H 0.06 -0.13 7.66 -51.93 -0.40 -0.53 16 28 H 0.13 -0.15 6.28 -52.49 -0.33 -0.48 16 29 H 0.13 -0.08 4.87 -52.49 -0.26 -0.34 16 30 H 0.12 0.08 4.95 -51.93 -0.26 -0.18 16 31 H 0.37 -0.64 8.70 45.56 0.40 -0.25 16 32 H 0.12 0.06 7.03 -52.49 -0.37 -0.31 16 33 H 0.12 -0.12 7.40 -52.49 -0.39 -0.51 16 34 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 36 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 37 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 40 H 0.07 -0.09 7.67 -51.93 -0.40 -0.49 16 41 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 42 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 43 H 0.12 -0.08 7.40 -52.48 -0.39 -0.46 16 44 H 0.12 0.16 8.06 -52.49 -0.42 -0.27 16 45 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 LS Contribution 367.07 15.07 5.53 5.53 Total: 0.00 -5.60 367.07 -8.61 -14.21 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: -6.16 Total: -8.32 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.90 Total: -1.01 kcal Atomic # 8 Polarization: -1.44 SS G_CDS: -0.66 Total: -2.10 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -6.42 Total: -8.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -5.60 -8.61 -14.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.762 kcal (2) G-P(sol) polarization free energy of solvation -5.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds