Wall clock time and date at job start Mon Mar 8 2021 09:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00037 * 2 1 4 4 C 1.38791 * 119.99500 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.19159 * 180.02562 * 4 3 2 6 6 C 1.38034 * 120.17626 * 359.68417 * 5 4 3 7 7 C 1.50700 * 120.00539 * 180.30036 * 6 5 4 8 8 O 1.42900 * 109.47550 * 105.35939 * 7 6 5 9 9 Si 1.86300 * 109.47318 * 345.35787 * 7 6 5 10 10 H 1.48506 * 109.46917 * 60.00112 * 9 7 6 11 11 H 1.48490 * 109.47634 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47379 * 300.00786 * 9 7 6 13 13 C 1.39373 * 119.98969 * 0.57164 * 6 5 4 14 14 C 1.48394 * 120.09672 * 179.72280 * 13 6 5 15 15 C 1.39337 * 120.11739 * 303.10163 * 14 13 6 16 16 C 1.38025 * 119.87740 * 179.97438 * 15 14 13 17 17 C 1.38324 * 120.12146 * 0.02562 * 16 15 14 18 18 Si 1.86795 * 119.87941 * 179.97438 * 17 16 15 19 19 C 1.86301 * 109.46695 * 269.97443 * 18 17 16 20 20 C 1.86298 * 109.47273 * 29.97445 * 18 17 16 21 21 C 1.86297 * 109.47232 * 149.97948 * 18 17 16 22 22 C 1.38329 * 120.23966 * 359.95473 * 17 16 15 23 23 C 1.38015 * 120.12499 * 0.04512 * 22 17 16 24 24 C 1.38542 * 119.99734 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46928 * 299.99769 * 1 2 3 27 27 H 1.08997 * 109.47480 * 60.00459 * 1 2 3 28 28 H 1.07998 * 119.90336 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.91586 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.47159 * 225.36173 * 7 6 5 31 31 H 0.96703 * 113.99762 * 300.00467 * 8 7 6 32 32 H 1.07999 * 120.06294 * 359.70107 * 15 14 13 33 33 H 1.07999 * 119.93940 * 179.97438 * 16 15 14 34 34 H 1.09006 * 109.47289 * 60.00241 * 19 18 17 35 35 H 1.09003 * 109.46996 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47637 * 300.00030 * 19 18 17 37 37 H 1.09000 * 109.46935 * 60.00204 * 20 18 17 38 38 H 1.09003 * 109.47144 * 180.02562 * 20 18 17 39 39 H 1.09001 * 109.46766 * 300.00289 * 20 18 17 40 40 H 1.08992 * 109.47529 * 59.99568 * 21 18 17 41 41 H 1.09003 * 109.47311 * 180.02562 * 21 18 17 42 42 H 1.09000 * 109.46916 * 299.99759 * 21 18 17 43 43 H 1.08004 * 119.93435 * 180.02562 * 22 17 16 44 44 H 1.07992 * 120.06360 * 179.97438 * 23 22 17 45 45 H 1.08001 * 120.08994 * 359.97220 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2900 2.3748 0.0005 5 6 1.9134 3.6087 0.0000 6 6 3.2913 3.6899 0.0055 7 6 3.9668 5.0371 0.0118 8 8 4.4944 5.2995 1.3136 9 14 2.7278 6.3552 -0.4334 10 1 1.6227 6.3510 0.5586 11 1 3.3935 7.6825 -0.4279 12 1 2.1795 6.0826 -1.7863 13 6 4.0578 2.5259 -0.0004 14 6 5.5393 2.6105 -0.0007 15 6 6.1993 3.3123 -1.0074 16 6 7.5775 3.3883 -1.0025 17 6 8.3033 2.7688 -0.0011 18 14 10.1682 2.8753 -0.0016 19 6 10.8715 1.4458 -0.9674 20 6 10.6986 4.4780 -0.7895 21 6 10.7945 2.8081 1.7517 22 6 7.6531 2.0711 1.0009 23 6 6.2754 1.9888 1.0058 24 6 3.4295 1.2833 -0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2116 2.3164 0.0014 29 1 1.3207 4.5116 0.0000 30 1 4.7780 5.0401 -0.7164 31 1 3.8270 5.3116 2.0133 32 1 5.6339 3.7923 -1.7924 33 1 8.0901 3.9316 -1.7825 34 1 10.5051 1.4851 -1.9932 35 1 11.9598 1.5082 -0.9680 36 1 10.5613 0.5081 -0.5064 37 1 10.2871 5.3143 -0.2244 38 1 11.7868 4.5399 -0.7902 39 1 10.3321 4.5172 -1.8153 40 1 10.4843 1.8705 2.2127 41 1 11.8828 2.8707 1.7515 42 1 10.3830 3.6444 2.3168 43 1 8.2247 1.5897 1.7806 44 1 5.7689 1.4435 1.7883 45 1 4.0191 0.3784 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:17:22 Heat of formation + Delta-G solvation = -55.753427 kcal Electronic energy + Delta-G solvation = -24009.512582 eV Core-core repulsion = 20694.744648 eV Total energy + Delta-G solvation = -3314.767935 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52212 -40.04253 -38.74504 -37.14803 -33.54233 -32.39059 -31.70548 -30.07911 -29.29766 -28.40480 -28.26014 -28.24504 -26.24265 -24.41569 -23.29929 -22.65188 -21.67145 -19.24720 -18.32890 -17.39099 -17.32764 -16.78359 -16.64742 -16.30215 -15.91878 -15.56331 -15.40864 -15.00236 -14.66975 -14.45660 -14.25902 -14.03433 -13.94333 -13.77261 -13.71777 -13.65074 -13.35860 -13.31352 -13.09113 -13.07021 -12.94629 -12.73164 -12.27801 -12.25731 -12.08549 -12.00203 -11.85239 -11.54171 -10.90066 -10.73248 -10.72187 -10.37838 -10.19859 -9.72794 -9.46266 -9.13594 -0.13017 0.21484 0.58157 0.59187 1.14020 1.39407 1.49654 1.87888 1.88700 2.05652 2.12438 2.26293 2.52755 2.70171 3.00354 3.50838 3.61806 3.66870 3.81597 4.06075 4.07996 4.16434 4.20857 4.34609 4.35613 4.41119 4.55900 4.61567 4.68975 4.72722 4.84766 4.86609 4.86889 4.90575 4.91447 4.92404 4.93182 4.97563 5.11616 5.19348 5.21367 5.35459 5.41529 5.60160 5.62320 5.66622 5.69262 5.70294 5.73709 6.18796 6.32493 6.71521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.125 3.875 4 C -0.203 4.203 5 C -0.087 4.087 6 C -0.149 4.149 7 C -0.082 4.082 8 O -0.547 6.547 9 Si 0.977 3.023 10 H -0.242 1.242 11 H -0.272 1.272 12 H -0.254 1.254 13 C 0.009 3.991 14 C -0.043 4.043 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.380 4.380 18 Si 1.124 2.876 19 C -0.461 4.461 20 C -0.461 4.461 21 C -0.462 4.462 22 C -0.097 4.097 23 C -0.127 4.127 24 C -0.155 4.155 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.115 0.885 31 H 0.384 0.616 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 0.421 -0.198 1.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.080 3.920 4 C -0.221 4.221 5 C -0.105 4.105 6 C -0.150 4.150 7 C -0.192 4.192 8 O -0.353 6.353 9 Si 0.800 3.200 10 H -0.165 1.165 11 H -0.198 1.198 12 H -0.178 1.178 13 C 0.009 3.991 14 C -0.043 4.043 15 C -0.147 4.147 16 C -0.114 4.114 17 C -0.419 4.419 18 Si 1.311 2.689 19 C -0.568 4.568 20 C -0.568 4.568 21 C -0.569 4.569 22 C -0.114 4.114 23 C -0.145 4.145 24 C -0.173 4.173 25 H 0.134 0.866 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.133 0.867 31 H 0.233 0.767 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.154 0.846 44 H 0.136 0.864 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.726 0.868 -0.746 2.071 hybrid contribution -0.807 -0.521 0.442 1.058 sum -2.533 0.347 -0.304 2.574 Atomic orbital electron populations 1.23371 0.76214 1.05645 1.02491 1.86073 1.23633 1.26787 1.88465 1.19071 0.92150 0.84961 0.95817 1.21482 1.01411 0.91449 1.07783 1.21059 0.93560 0.98290 0.97571 1.20346 0.93499 0.95543 1.05613 1.25184 1.06442 0.98135 0.89454 1.86530 1.38662 1.93708 1.16422 0.85336 0.77040 0.76671 0.80974 1.16509 1.19753 1.17811 1.18500 0.92216 0.91696 0.96664 1.18717 0.90810 0.98599 0.96189 1.21406 0.95512 0.99456 0.98365 1.21305 0.93331 0.98102 0.98702 1.27993 1.18816 0.99074 0.96010 0.77206 0.59522 0.66098 0.66050 1.26275 1.07005 1.14481 1.09019 1.26256 1.06113 1.16772 1.07634 1.26278 1.06636 1.04548 1.19442 1.21268 0.93720 0.97829 0.98619 1.21364 0.95005 1.00000 0.98176 1.20560 0.91886 0.97923 1.06947 0.86617 0.91405 0.91433 0.82821 0.83808 0.86720 0.76727 0.85518 0.84190 0.91383 0.90653 0.91492 0.91359 0.90637 0.90837 0.91025 0.90631 0.91424 0.84598 0.86390 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.69 10.49 -92.45 -0.97 -2.66 16 3 C 0.13 0.69 6.68 22.47 0.15 0.84 16 4 C -0.20 -0.37 9.03 22.40 0.20 -0.16 16 5 C -0.09 -0.14 8.65 22.22 0.19 0.06 16 6 C -0.15 -0.57 5.27 -19.64 -0.10 -0.67 16 7 C -0.08 -0.18 2.07 71.24 0.15 -0.03 16 8 O -0.55 -1.95 12.82 -148.98 -1.91 -3.86 16 9 Si 0.98 -0.23 25.48 68.60 1.75 1.52 16 10 H -0.24 0.48 6.74 99.48 0.67 1.15 16 11 H -0.27 -0.85 7.11 99.48 0.71 -0.14 16 12 H -0.25 -0.15 7.11 99.48 0.71 0.55 16 13 C 0.01 0.06 5.39 -20.06 -0.11 -0.05 16 14 C -0.04 -0.29 4.85 -20.04 -0.10 -0.39 16 15 C -0.13 -0.65 7.93 22.48 0.18 -0.48 16 16 C -0.10 -0.26 9.28 22.24 0.21 -0.06 16 17 C -0.38 -0.64 4.60 22.31 0.10 -0.53 16 18 Si 1.12 -4.48 12.31 68.60 0.84 -3.64 16 19 C -0.46 1.02 8.65 113.37 0.98 2.01 16 20 C -0.46 1.36 8.52 113.37 0.97 2.32 16 21 C -0.46 1.16 8.52 113.37 0.97 2.13 16 22 C -0.10 -0.34 9.28 22.24 0.21 -0.13 16 23 C -0.13 -0.79 9.63 22.48 0.22 -0.57 16 24 C -0.15 -1.08 9.56 22.58 0.22 -0.86 16 25 H 0.12 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H 0.07 -0.36 7.66 -2.39 -0.02 -0.38 16 27 H 0.07 -0.36 7.66 -2.39 -0.02 -0.38 16 28 H 0.15 -0.52 6.28 -2.91 -0.02 -0.54 16 29 H 0.14 -0.36 4.87 -2.91 -0.01 -0.37 16 30 H 0.12 0.27 4.95 -2.38 -0.01 0.26 16 31 H 0.38 -1.17 8.70 -74.06 -0.64 -1.81 16 32 H 0.13 0.29 7.03 -2.91 -0.02 0.27 16 33 H 0.14 -0.28 7.40 -2.91 -0.02 -0.30 16 34 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 35 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 36 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 37 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 38 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.07 -0.26 7.67 -2.39 -0.02 -0.28 16 40 H 0.07 -0.20 7.67 -2.39 -0.02 -0.22 16 41 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 42 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 43 H 0.14 -0.09 7.40 -2.91 -0.02 -0.12 16 44 H 0.12 0.59 8.06 -2.91 -0.02 0.57 16 45 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 Total: 0.00 -13.39 367.07 6.31 -7.08 By element: Atomic # 1 Polarization: -3.98 SS G_CDS: 1.06 Total: -2.92 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.54 Total: 4.48 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: -2.88 Total: -6.52 kcal Atomic # 14 Polarization: -4.71 SS G_CDS: 2.59 Total: -2.12 kcal Total: -13.39 6.31 -7.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.674 kcal (2) G-P(sol) polarization free energy of solvation -13.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds