Wall clock time and date at job start Mon Mar 8 2021 09:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76197 * 103.00258 * 2 1 4 4 C 1.38757 * 120.01851 * 359.97438 * 3 2 1 5 5 C 1.39214 * 119.79230 * 179.76936 * 4 3 2 6 6 C 1.48399 * 120.08014 * 180.27342 * 5 4 3 7 7 C 1.39338 * 120.12194 * 359.95221 * 6 5 4 8 8 C 1.38022 * 119.87733 * 179.76555 * 7 6 5 9 9 C 1.38317 * 120.12151 * 0.51501 * 8 7 6 10 10 Si 1.86795 * 119.87741 * 179.72086 * 9 8 7 11 11 C 1.86309 * 109.47043 * 270.01923 * 10 9 8 12 12 C 1.86298 * 109.47349 * 30.01655 * 10 9 8 13 13 C 1.86307 * 109.47181 * 150.02115 * 10 9 8 14 14 C 1.38322 * 120.24228 * 359.73793 * 9 8 7 15 15 C 1.38014 * 120.12316 * 0.02562 * 14 9 8 16 16 C 1.39369 * 119.84012 * 0.50579 * 5 4 3 17 17 C 1.38114 * 120.03515 * 359.48782 * 16 5 4 18 18 C 1.38138 * 120.20722 * 0.26022 * 17 16 5 19 19 C 1.50697 * 119.91780 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47119 * 105.00275 * 19 18 17 21 21 Si 1.86301 * 109.47211 * 344.99837 * 19 18 17 22 22 H 1.48496 * 109.46942 * 180.02562 * 21 19 18 23 23 H 1.48496 * 109.46893 * 300.00076 * 21 19 18 24 24 H 1.48502 * 109.47078 * 60.00024 * 21 19 18 25 25 H 1.08996 * 109.47020 * 300.00173 * 1 2 3 26 26 H 1.08997 * 109.46754 * 59.99847 * 1 2 3 27 27 H 1.08996 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.09980 * 0.04310 * 4 3 2 29 29 H 1.07998 * 120.05567 * 0.02562 * 7 6 5 30 30 H 1.07999 * 119.93518 * 180.22953 * 8 7 6 31 31 H 1.09000 * 109.46773 * 59.99673 * 11 10 9 32 32 H 1.08995 * 109.47044 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.46583 * 299.99843 * 11 10 9 34 34 H 1.09004 * 109.46839 * 60.00477 * 12 10 9 35 35 H 1.09004 * 109.47160 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.47369 * 300.00112 * 12 10 9 37 37 H 1.09001 * 109.46909 * 59.99510 * 13 10 9 38 38 H 1.08999 * 109.46717 * 179.97438 * 13 10 9 39 39 H 1.08997 * 109.46640 * 299.99821 * 13 10 9 40 40 H 1.08006 * 119.94118 * 179.97438 * 14 9 8 41 41 H 1.08000 * 120.06413 * 180.02562 * 15 14 9 42 42 H 1.08002 * 119.98545 * 179.77309 * 16 5 4 43 43 H 1.08005 * 119.89303 * 180.23387 * 17 16 5 44 44 H 1.09001 * 109.47168 * 224.99795 * 19 18 17 45 45 H 0.96703 * 114.00081 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1960 2.6635 -0.0005 5 6 1.5146 4.0187 0.0043 6 6 0.4347 5.0366 0.0099 7 6 -0.9008 4.6392 0.0093 8 6 -1.9011 5.5902 0.0194 9 6 -1.5799 6.9355 0.0194 10 14 -2.9391 8.2168 0.0252 11 6 -3.3976 8.6437 -1.7294 12 6 -4.4311 7.5353 0.9085 13 6 -2.3444 9.7492 0.9021 14 6 -0.2558 7.3356 0.0147 15 6 0.7525 6.3932 0.0095 16 6 2.8501 4.4171 -0.0010 17 6 3.8544 3.4690 -0.0003 18 6 3.5402 2.1238 0.0001 19 6 4.6412 1.0949 0.0003 20 8 4.7513 0.5153 1.3017 21 14 6.2533 1.9103 -0.4549 22 1 7.3381 0.8962 -0.4554 23 1 6.1388 2.5126 -1.8074 24 1 6.5678 2.9719 0.5347 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.1625 2.3499 -0.0003 29 1 -1.1527 3.5890 0.0052 30 1 -2.9365 5.2832 0.0227 31 1 -3.7455 7.7471 -2.2424 32 1 -4.1904 9.3917 -1.7260 33 1 -2.5246 9.0425 -2.2462 34 1 -4.1629 7.2856 1.9351 35 1 -5.2242 8.2832 0.9123 36 1 -4.7791 6.6389 0.3955 37 1 -1.4714 10.1478 0.3852 38 1 -3.1374 10.4970 0.9050 39 1 -2.0762 9.4994 1.9286 40 1 -0.0105 8.3875 0.0143 41 1 1.7860 6.7067 0.0063 42 1 3.0999 5.4679 -0.0009 43 1 4.8886 3.7804 -0.0006 44 1 4.4104 0.3157 -0.7261 45 1 5.4424 -0.1571 1.3757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:28 Heat of formation + Delta-G solvation = -28.532168 kcal Electronic energy + Delta-G solvation = -23083.550753 eV Core-core repulsion = 19894.033899 eV Total energy + Delta-G solvation = -3189.516853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93507 -39.44693 -37.50860 -33.96806 -32.77014 -31.69757 -30.64958 -29.76203 -29.45861 -28.46516 -28.42754 -26.50872 -24.70044 -23.34404 -22.58118 -21.67597 -18.91390 -18.45399 -17.58375 -16.96294 -16.79411 -16.20839 -15.84009 -15.43592 -15.22251 -14.92803 -14.86466 -14.76859 -14.37125 -14.33852 -14.27351 -14.20689 -13.99016 -13.86135 -13.64831 -13.48299 -13.38119 -13.27406 -13.23704 -13.12198 -12.90053 -12.63075 -12.20084 -12.08339 -11.87203 -11.64777 -11.22593 -11.09252 -10.92138 -10.83918 -10.77746 -10.33464 -10.26563 -9.81726 -9.04199 -8.29243 -0.39537 0.24568 0.54453 0.57007 0.79013 1.13159 1.42943 1.45699 1.51442 1.69781 1.83262 1.89183 1.93731 2.53020 2.53854 3.10013 3.40523 3.61731 3.72034 3.91533 3.98923 4.06606 4.08129 4.09317 4.16966 4.25494 4.41531 4.47220 4.58756 4.67662 4.68429 4.69782 4.70373 4.73537 4.74228 4.74487 4.75920 4.84586 4.97165 5.08028 5.14541 5.26817 5.33941 5.41380 5.48864 5.49497 5.52282 5.61821 5.74919 5.82275 6.10239 6.63528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 S -0.087 6.087 3 C -0.058 4.058 4 C -0.126 4.126 5 C -0.020 4.020 6 C -0.039 4.039 7 C -0.120 4.120 8 C -0.086 4.086 9 C -0.368 4.368 10 Si 1.059 2.941 11 C -0.449 4.449 12 C -0.450 4.450 13 C -0.449 4.449 14 C -0.086 4.086 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.101 4.101 18 C -0.058 4.058 19 C -0.084 4.084 20 O -0.535 6.535 21 Si 0.947 3.053 22 H -0.254 1.254 23 H -0.247 1.247 24 H -0.247 1.247 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 0.752 -1.077 1.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 S 0.156 5.844 3 C -0.171 4.171 4 C -0.150 4.150 5 C -0.022 4.022 6 C -0.039 4.039 7 C -0.138 4.138 8 C -0.104 4.104 9 C -0.409 4.409 10 Si 1.251 2.749 11 C -0.556 4.556 12 C -0.557 4.557 13 C -0.557 4.557 14 C -0.104 4.104 15 C -0.136 4.136 16 C -0.131 4.131 17 C -0.120 4.120 18 C -0.064 4.064 19 C -0.195 4.195 20 O -0.341 6.341 21 Si 0.769 3.231 22 H -0.178 1.178 23 H -0.171 1.171 24 H -0.170 1.170 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.096 0.904 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.282 0.414 -1.186 1.288 hybrid contribution -0.705 0.350 0.024 0.788 sum -0.987 0.764 -1.163 1.705 Atomic orbital electron populations 1.23787 0.95782 1.07382 1.05620 1.85653 1.05177 1.01905 1.91634 1.21540 0.95426 0.97190 1.02949 1.21241 0.98462 0.92103 1.03191 1.18708 0.92717 0.92022 0.98746 1.18768 0.92323 0.92583 1.00238 1.21266 0.92159 0.99537 1.00859 1.21010 0.98853 0.92979 0.97553 1.27449 1.06409 1.04978 1.02087 0.78186 0.64480 0.64819 0.67446 1.26125 1.05454 1.05321 1.18749 1.26137 1.14658 1.06686 1.08254 1.26134 1.06204 1.15180 1.08207 1.21029 0.92682 0.99202 0.97451 1.21320 0.99690 0.92141 1.00477 1.21172 0.91467 0.99829 1.00681 1.20962 0.99743 0.91852 0.99464 1.18881 0.91783 0.93314 1.02382 1.24724 1.06123 0.99111 0.89515 1.86549 1.60402 1.59044 1.28115 0.85753 0.75687 0.80634 0.81016 1.17785 1.17078 1.17019 0.89684 0.89795 0.87146 0.85200 0.86349 0.85959 0.91187 0.91038 0.91165 0.91053 0.90944 0.91198 0.91166 0.90952 0.91042 0.85879 0.85845 0.84963 0.85205 0.90440 0.77387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.14 9.15 101.05 0.92 1.06 16 2 S -0.09 -0.17 20.98 -107.50 -2.25 -2.43 16 3 C -0.06 -0.18 6.11 -39.08 -0.24 -0.42 16 4 C -0.13 -0.30 8.74 -39.03 -0.34 -0.64 16 5 C -0.02 -0.05 5.87 -104.93 -0.62 -0.67 16 6 C -0.04 -0.08 5.88 -104.89 -0.62 -0.70 16 7 C -0.12 -0.17 9.43 -39.25 -0.37 -0.54 16 8 C -0.09 -0.04 9.28 -39.63 -0.37 -0.41 16 9 C -0.37 0.03 4.60 -39.52 -0.18 -0.15 16 10 Si 1.06 -2.63 12.31 -169.99 -2.09 -4.73 16 11 C -0.45 0.66 8.65 101.05 0.87 1.54 16 12 C -0.45 0.80 8.52 101.05 0.86 1.66 16 13 C -0.45 0.80 8.53 101.05 0.86 1.66 16 14 C -0.09 -0.03 9.28 -39.63 -0.37 -0.40 16 15 C -0.12 -0.15 9.43 -39.25 -0.37 -0.52 16 16 C -0.11 -0.21 9.43 -39.21 -0.37 -0.58 16 17 C -0.10 -0.22 8.64 -39.66 -0.34 -0.56 16 18 C -0.06 -0.17 5.32 -104.35 -0.55 -0.72 16 19 C -0.08 -0.10 2.03 36.00 0.07 -0.02 16 20 O -0.54 -0.76 12.72 -35.23 -0.45 -1.21 16 21 Si 0.95 0.08 25.49 -169.99 -4.33 -4.25 16 22 H -0.25 -0.02 7.11 56.52 0.40 0.39 16 23 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 24 H -0.25 -0.22 6.73 56.52 0.38 0.16 16 25 H 0.08 -0.10 7.75 -51.93 -0.40 -0.50 16 26 H 0.08 -0.13 7.75 -51.93 -0.40 -0.54 16 27 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 28 H 0.13 0.08 4.02 -52.49 -0.21 -0.13 16 29 H 0.12 -0.02 6.21 -52.49 -0.33 -0.34 16 30 H 0.12 -0.19 7.40 -52.49 -0.39 -0.58 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.14 7.67 -51.93 -0.40 -0.54 16 37 H 0.07 -0.14 7.67 -51.93 -0.40 -0.54 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 40 H 0.12 -0.20 7.40 -52.48 -0.39 -0.59 16 41 H 0.12 -0.05 6.20 -52.49 -0.33 -0.38 16 42 H 0.13 -0.04 6.20 -52.49 -0.33 -0.37 16 43 H 0.13 0.07 4.86 -52.48 -0.26 -0.18 16 44 H 0.08 0.02 7.30 -51.93 -0.38 -0.36 16 45 H 0.38 -1.13 8.74 45.56 0.40 -0.73 16 LS Contribution 374.35 15.07 5.64 5.64 Total: 0.00 -6.12 374.35 -10.56 -16.68 By element: Atomic # 1 Polarization: -3.37 SS G_CDS: -5.94 Total: -9.31 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.14 Total: -0.40 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -0.45 Total: -1.21 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: -6.42 Total: -8.98 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.25 Total: -2.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -6.12 -10.56 -16.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.848 kcal (2) G-P(sol) polarization free energy of solvation -6.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds