Wall clock time and date at job start Mon Mar 8 2021 09:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76197 * 103.00258 * 2 1 4 4 C 1.38757 * 120.01851 * 359.97438 * 3 2 1 5 5 C 1.39214 * 119.79230 * 179.76936 * 4 3 2 6 6 C 1.48399 * 120.08014 * 180.27342 * 5 4 3 7 7 C 1.39338 * 120.12194 * 359.95221 * 6 5 4 8 8 C 1.38022 * 119.87733 * 179.76555 * 7 6 5 9 9 C 1.38317 * 120.12151 * 0.51501 * 8 7 6 10 10 Si 1.86795 * 119.87741 * 179.72086 * 9 8 7 11 11 C 1.86309 * 109.47043 * 270.01923 * 10 9 8 12 12 C 1.86298 * 109.47349 * 30.01655 * 10 9 8 13 13 C 1.86307 * 109.47181 * 150.02115 * 10 9 8 14 14 C 1.38322 * 120.24228 * 359.73793 * 9 8 7 15 15 C 1.38014 * 120.12316 * 0.02562 * 14 9 8 16 16 C 1.39369 * 119.84012 * 0.50579 * 5 4 3 17 17 C 1.38114 * 120.03515 * 359.48782 * 16 5 4 18 18 C 1.38138 * 120.20722 * 0.26022 * 17 16 5 19 19 C 1.50697 * 119.91780 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47119 * 105.00275 * 19 18 17 21 21 Si 1.86301 * 109.47211 * 344.99837 * 19 18 17 22 22 H 1.48496 * 109.46942 * 180.02562 * 21 19 18 23 23 H 1.48496 * 109.46893 * 300.00076 * 21 19 18 24 24 H 1.48502 * 109.47078 * 60.00024 * 21 19 18 25 25 H 1.08996 * 109.47020 * 300.00173 * 1 2 3 26 26 H 1.08997 * 109.46754 * 59.99847 * 1 2 3 27 27 H 1.08996 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.09980 * 0.04310 * 4 3 2 29 29 H 1.07998 * 120.05567 * 0.02562 * 7 6 5 30 30 H 1.07999 * 119.93518 * 180.22953 * 8 7 6 31 31 H 1.09000 * 109.46773 * 59.99673 * 11 10 9 32 32 H 1.08995 * 109.47044 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.46583 * 299.99843 * 11 10 9 34 34 H 1.09004 * 109.46839 * 60.00477 * 12 10 9 35 35 H 1.09004 * 109.47160 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.47369 * 300.00112 * 12 10 9 37 37 H 1.09001 * 109.46909 * 59.99510 * 13 10 9 38 38 H 1.08999 * 109.46717 * 179.97438 * 13 10 9 39 39 H 1.08997 * 109.46640 * 299.99821 * 13 10 9 40 40 H 1.08006 * 119.94118 * 179.97438 * 14 9 8 41 41 H 1.08000 * 120.06413 * 180.02562 * 15 14 9 42 42 H 1.08002 * 119.98545 * 179.77309 * 16 5 4 43 43 H 1.08005 * 119.89303 * 180.23387 * 17 16 5 44 44 H 1.09001 * 109.47168 * 224.99795 * 19 18 17 45 45 H 0.96703 * 114.00081 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1960 2.6635 -0.0005 5 6 1.5146 4.0187 0.0043 6 6 0.4347 5.0366 0.0099 7 6 -0.9008 4.6392 0.0093 8 6 -1.9011 5.5902 0.0194 9 6 -1.5799 6.9355 0.0194 10 14 -2.9391 8.2168 0.0252 11 6 -3.3976 8.6437 -1.7294 12 6 -4.4311 7.5353 0.9085 13 6 -2.3444 9.7492 0.9021 14 6 -0.2558 7.3356 0.0147 15 6 0.7525 6.3932 0.0095 16 6 2.8501 4.4171 -0.0010 17 6 3.8544 3.4690 -0.0003 18 6 3.5402 2.1238 0.0001 19 6 4.6412 1.0949 0.0003 20 8 4.7513 0.5153 1.3017 21 14 6.2533 1.9103 -0.4549 22 1 7.3381 0.8962 -0.4554 23 1 6.1388 2.5126 -1.8074 24 1 6.5678 2.9719 0.5347 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.1625 2.3499 -0.0003 29 1 -1.1527 3.5890 0.0052 30 1 -2.9365 5.2832 0.0227 31 1 -3.7455 7.7471 -2.2424 32 1 -4.1904 9.3917 -1.7260 33 1 -2.5246 9.0425 -2.2462 34 1 -4.1629 7.2856 1.9351 35 1 -5.2242 8.2832 0.9123 36 1 -4.7791 6.6389 0.3955 37 1 -1.4714 10.1478 0.3852 38 1 -3.1374 10.4970 0.9050 39 1 -2.0762 9.4994 1.9286 40 1 -0.0105 8.3875 0.0143 41 1 1.7860 6.7067 0.0063 42 1 3.0999 5.4679 -0.0009 43 1 4.8886 3.7804 -0.0006 44 1 4.4104 0.3157 -0.7261 45 1 5.4424 -0.1571 1.3757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:27 Heat of formation + Delta-G solvation = -18.173151 kcal Electronic energy + Delta-G solvation = -23083.101552 eV Core-core repulsion = 19894.033899 eV Total energy + Delta-G solvation = -3189.067653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.00546 -39.47578 -37.56282 -34.03011 -32.84602 -31.71506 -30.67593 -29.70646 -29.32839 -28.29598 -28.26870 -26.56917 -24.77068 -23.39536 -22.62097 -21.74952 -18.96856 -18.50336 -17.64200 -17.04367 -16.82844 -16.25278 -15.87410 -15.46376 -15.24229 -14.96724 -14.90495 -14.76736 -14.37575 -14.30242 -14.28072 -14.05670 -13.88375 -13.73199 -13.63938 -13.44618 -13.34579 -13.14366 -13.11328 -12.97244 -12.87218 -12.66505 -12.24558 -12.12759 -11.89413 -11.67904 -11.22282 -11.14968 -10.78908 -10.77802 -10.75443 -10.40024 -10.30117 -9.83869 -9.10921 -8.41578 -0.47874 0.11086 0.50171 0.52353 0.72969 1.10492 1.40544 1.43517 1.49395 1.84648 1.85696 2.02917 2.08062 2.46985 2.66987 3.06334 3.36439 3.55944 3.66197 3.89406 3.94947 4.05250 4.14590 4.15951 4.17218 4.23403 4.36028 4.49649 4.54148 4.67915 4.75370 4.78209 4.84497 4.84812 4.88426 4.89296 4.90095 4.90819 4.95532 5.00250 5.13289 5.19779 5.24010 5.43114 5.58112 5.59245 5.67711 5.67909 5.71570 5.73279 6.11234 6.79683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.117 6.117 3 C -0.072 4.072 4 C -0.134 4.134 5 C -0.030 4.030 6 C -0.058 4.058 7 C -0.134 4.134 8 C -0.097 4.097 9 C -0.379 4.379 10 Si 1.127 2.873 11 C -0.463 4.463 12 C -0.462 4.462 13 C -0.462 4.462 14 C -0.097 4.097 15 C -0.132 4.132 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.077 4.077 19 C -0.088 4.088 20 O -0.553 6.553 21 Si 0.984 3.016 22 H -0.251 1.251 23 H -0.258 1.258 24 H -0.259 1.259 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.142 0.858 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.081 0.919 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 1.277 -1.123 2.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.127 5.873 3 C -0.185 4.185 4 C -0.158 4.158 5 C -0.032 4.032 6 C -0.058 4.058 7 C -0.152 4.152 8 C -0.115 4.115 9 C -0.418 4.418 10 Si 1.314 2.686 11 C -0.569 4.569 12 C -0.570 4.570 13 C -0.569 4.569 14 C -0.115 4.115 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.130 4.130 18 C -0.083 4.083 19 C -0.198 4.198 20 O -0.362 6.362 21 Si 0.806 3.194 22 H -0.174 1.174 23 H -0.182 1.182 24 H -0.183 1.183 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.143 0.857 28 H 0.159 0.841 29 H 0.144 0.856 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.160 0.840 41 H 0.152 0.848 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.099 0.901 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.858 0.911 -1.232 1.756 hybrid contribution -0.575 0.196 0.044 0.609 sum -1.433 1.108 -1.188 2.166 Atomic orbital electron populations 1.23852 0.93257 1.08487 1.06212 1.85640 1.08077 1.01847 1.91769 1.21716 0.95815 0.97611 1.03368 1.21436 0.99038 0.92163 1.03163 1.18907 0.93226 0.92305 0.98760 1.18910 0.92588 0.92945 1.01398 1.21499 0.92265 1.00375 1.01070 1.21330 0.99626 0.93193 0.97346 1.28060 1.07206 1.05609 1.00898 0.77161 0.62536 0.62961 0.65910 1.26291 1.05548 1.05374 1.19710 1.26281 1.15317 1.07070 1.08285 1.26277 1.06566 1.15854 1.08238 1.21359 0.92813 1.00086 0.97214 1.21572 1.00677 0.92122 1.00561 1.21439 0.91341 1.00776 1.00320 1.21184 1.00474 0.91845 0.99516 1.19240 0.92434 0.94113 1.02538 1.24849 1.06389 0.99092 0.89471 1.86497 1.61505 1.59833 1.28354 0.85225 0.74635 0.79783 0.79719 1.17432 1.18150 1.18301 0.89286 0.88988 0.85722 0.84055 0.85558 0.84164 0.91445 0.90673 0.91416 0.91342 0.90656 0.90903 0.90860 0.90668 0.91326 0.84039 0.84803 0.83271 0.84085 0.90086 0.75445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 9.15 113.37 1.04 1.29 16 2 S -0.12 -0.57 20.98 -56.49 -1.18 -1.76 16 3 C -0.07 -0.54 6.11 22.59 0.14 -0.40 16 4 C -0.13 -0.81 8.74 22.63 0.20 -0.61 16 5 C -0.03 -0.19 5.87 -20.06 -0.12 -0.31 16 6 C -0.06 -0.30 5.88 -20.04 -0.12 -0.42 16 7 C -0.13 -0.45 9.43 22.48 0.21 -0.23 16 8 C -0.10 -0.08 9.28 22.24 0.21 0.13 16 9 C -0.38 0.20 4.60 22.31 0.10 0.30 16 10 Si 1.13 -6.54 12.31 68.60 0.84 -5.69 16 11 C -0.46 1.68 8.65 113.37 0.98 2.66 16 12 C -0.46 2.03 8.52 113.37 0.97 3.00 16 13 C -0.46 2.04 8.53 113.37 0.97 3.01 16 14 C -0.10 -0.06 9.28 22.24 0.21 0.14 16 15 C -0.13 -0.40 9.43 22.48 0.21 -0.18 16 16 C -0.12 -0.57 9.43 22.51 0.21 -0.36 16 17 C -0.11 -0.60 8.64 22.22 0.19 -0.41 16 18 C -0.08 -0.55 5.32 -19.69 -0.10 -0.65 16 19 C -0.09 -0.28 2.03 71.23 0.14 -0.14 16 20 O -0.55 -2.02 12.72 -148.98 -1.89 -3.91 16 21 Si 0.98 0.50 25.49 68.60 1.75 2.25 16 22 H -0.25 0.07 7.11 99.48 0.71 0.78 16 23 H -0.26 -0.49 7.11 99.48 0.71 0.22 16 24 H -0.26 -0.58 6.73 99.48 0.67 0.09 16 25 H 0.09 -0.21 7.75 -2.39 -0.02 -0.22 16 26 H 0.09 -0.29 7.75 -2.39 -0.02 -0.31 16 27 H 0.12 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.14 0.31 4.02 -2.91 -0.01 0.30 16 29 H 0.13 0.05 6.21 -2.91 -0.02 0.03 16 30 H 0.14 -0.53 7.40 -2.91 -0.02 -0.55 16 31 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 32 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 33 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 34 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 35 H 0.07 -0.36 7.96 -2.38 -0.02 -0.37 16 36 H 0.07 -0.35 7.67 -2.39 -0.02 -0.37 16 37 H 0.07 -0.36 7.67 -2.39 -0.02 -0.38 16 38 H 0.07 -0.36 7.96 -2.39 -0.02 -0.37 16 39 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.14 -0.56 7.40 -2.91 -0.02 -0.58 16 41 H 0.13 -0.06 6.20 -2.91 -0.02 -0.08 16 42 H 0.15 0.01 6.20 -2.91 -0.02 -0.01 16 43 H 0.14 0.28 4.86 -2.91 -0.01 0.27 16 44 H 0.08 0.14 7.30 -2.39 -0.02 0.12 16 45 H 0.40 -2.16 8.74 -74.06 -0.65 -2.81 16 Total: 0.00 -14.45 374.35 6.02 -8.43 By element: Atomic # 1 Polarization: -7.21 SS G_CDS: 1.07 Total: -6.14 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.43 Total: 6.82 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: -1.89 Total: -3.91 kcal Atomic # 14 Polarization: -6.04 SS G_CDS: 2.59 Total: -3.45 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -1.18 Total: -1.76 kcal Total: -14.45 6.02 -8.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.741 kcal (2) G-P(sol) polarization free energy of solvation -14.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds