Wall clock time and date at job start Mon Mar 8 2021 09:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86302 * 109.47129 * 2 1 4 4 C 1.86302 * 109.47125 * 239.99859 * 2 1 3 5 5 C 1.86803 * 109.46888 * 120.00016 * 2 1 3 6 6 C 1.38324 * 119.87327 * 269.95596 * 5 2 1 7 7 C 1.38011 * 120.12022 * 180.02562 * 6 5 2 8 8 C 1.39365 * 119.87682 * 0.02562 * 7 6 5 9 9 C 1.48330 * 120.12323 * 179.97438 * 8 7 6 10 10 C 1.39259 * 120.15202 * 310.00660 * 9 8 7 11 11 C 1.38052 * 119.93519 * 180.02562 * 10 9 8 12 12 C 1.50701 * 119.88288 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47076 * 64.99715 * 12 11 10 14 14 Si 1.86298 * 109.46943 * 185.00037 * 12 11 10 15 15 H 1.48491 * 109.47445 * 59.99800 * 14 12 11 16 16 H 1.48500 * 109.46841 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47120 * 299.99746 * 14 12 11 18 18 C 1.38342 * 120.23316 * 359.97347 * 11 10 9 19 19 C 1.38231 * 120.30734 * 0.02562 * 18 11 10 20 20 C 1.38541 * 120.05865 * 359.72030 * 19 18 11 21 21 O 1.35845 * 120.11605 * 180.29871 * 20 19 18 22 22 C 1.42905 * 117.00050 * 0.23557 * 21 20 19 23 23 F 1.39897 * 109.46985 * 59.99692 * 22 21 20 24 24 F 1.39900 * 109.46885 * 179.97438 * 22 21 20 25 25 F 1.39904 * 109.46685 * 300.00036 * 22 21 20 26 26 C 1.39358 * 119.75132 * 0.02562 * 8 7 6 27 27 C 1.38011 * 119.87844 * 359.97438 * 26 8 7 28 28 H 1.09000 * 109.47125 * 299.99933 * 1 2 3 29 29 H 1.09004 * 109.46919 * 60.00221 * 1 2 3 30 30 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46954 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46772 * 300.00186 * 3 2 1 33 33 H 1.09005 * 109.46711 * 59.99705 * 3 2 1 34 34 H 1.08999 * 109.47106 * 300.00419 * 4 2 1 35 35 H 1.08996 * 109.47051 * 60.00284 * 4 2 1 36 36 H 1.09000 * 109.47028 * 179.97438 * 4 2 1 37 37 H 1.08000 * 119.94194 * 0.04326 * 6 5 2 38 38 H 1.08005 * 120.05939 * 180.29917 * 7 6 5 39 39 H 1.08002 * 120.03512 * 0.02562 * 10 9 8 40 40 H 1.08997 * 109.46917 * 305.00143 * 12 11 10 41 41 H 0.96703 * 113.99996 * 179.97438 * 13 12 11 42 42 H 1.08000 * 119.84722 * 180.02562 * 18 11 10 43 43 H 1.07994 * 119.96945 * 180.02562 * 19 18 11 44 44 H 1.08001 * 120.06174 * 179.97438 * 26 8 7 45 45 H 1.07996 * 119.93880 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5253 6 6 2.7162 -0.1665 2.6873 7 6 3.1767 -0.8119 3.8169 8 6 3.4099 -2.1855 3.7853 9 6 3.9054 -2.8845 4.9961 10 6 5.0086 -2.3899 5.6871 11 6 5.4663 -3.0444 6.8131 12 6 6.6607 -2.5085 7.5597 13 8 6.3405 -1.2322 8.1172 14 14 7.1177 -3.6871 8.9282 15 1 7.4503 -5.0132 8.3488 16 1 8.2942 -3.1586 9.6642 17 1 5.9723 -3.8284 9.8628 18 6 4.8324 -4.1905 7.2587 19 6 3.7365 -4.6900 6.5803 20 6 3.2635 -4.0402 5.4519 21 8 2.1828 -4.5267 4.7878 22 6 1.5786 -5.7111 5.3116 23 9 1.1406 -5.4722 6.6186 24 9 0.4876 -6.0703 4.5129 25 9 2.5159 -6.7497 5.3164 26 6 3.1769 -2.8996 2.6115 27 6 2.7165 -2.2439 1.4877 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5740 1.7564 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1208 -0.3644 -2.4111 36 1 3.5741 -0.8779 -1.5213 37 1 2.5352 0.8980 2.7107 38 1 3.3517 -0.2541 4.7251 39 1 5.5058 -1.4952 5.3424 40 1 7.5013 -2.4047 6.8737 41 1 7.0649 -0.8268 8.6133 42 1 5.1954 -4.6973 8.1406 43 1 3.2455 -5.5849 6.9332 44 1 3.3564 -3.9642 2.5812 45 1 2.5352 -2.7965 0.5777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:50 Heat of formation + Delta-G solvation = -220.158761 kcal Electronic energy + Delta-G solvation = -31514.107961 eV Core-core repulsion = 26783.848949 eV Total energy + Delta-G solvation = -4730.259012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.112 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.44643 -49.15358 -49.04725 -41.69501 -39.66922 -39.28555 -37.39980 -33.92969 -32.23154 -31.78953 -30.16256 -29.37764 -28.42946 -28.38364 -27.69804 -26.01498 -24.70441 -23.55212 -22.86044 -21.74949 -20.67535 -20.16650 -20.02950 -18.60348 -18.13396 -17.72823 -16.82562 -16.66176 -16.34891 -16.16541 -15.80465 -15.78733 -15.67780 -15.54689 -15.45910 -15.31595 -15.11957 -15.00847 -14.63570 -14.46158 -14.36825 -14.29488 -14.15167 -14.06674 -13.84326 -13.81745 -13.54845 -13.25301 -13.23990 -13.21017 -13.09688 -13.07187 -12.55828 -12.28968 -12.07346 -11.94637 -11.82385 -11.04433 -10.88280 -10.79682 -10.46568 -10.35417 -9.76705 -9.72622 -9.17826 -0.27091 0.02257 0.41311 0.54989 0.64215 1.03711 1.34804 1.41333 1.74512 1.79869 1.81566 1.87710 1.97249 2.33019 2.57449 2.74158 2.94848 3.00513 3.24535 3.34130 3.57895 3.69167 3.84605 4.01671 4.11157 4.17015 4.20545 4.35110 4.53181 4.66358 4.67193 4.72772 4.73086 4.75659 4.77284 4.78968 4.79581 4.87248 4.88388 5.05601 5.20159 5.25726 5.29347 5.44034 5.49410 5.52661 5.56683 5.67640 5.68831 5.75558 6.17169 6.47640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.058 2.942 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.365 4.365 6 C -0.089 4.089 7 C -0.112 4.112 8 C -0.041 4.041 9 C -0.048 4.048 10 C -0.041 4.041 11 C -0.089 4.089 12 C -0.079 4.079 13 O -0.544 6.544 14 Si 0.941 3.059 15 H -0.247 1.247 16 H -0.253 1.253 17 H -0.246 1.246 18 C -0.080 4.080 19 C -0.182 4.182 20 C 0.121 3.879 21 O -0.301 6.301 22 C 0.602 3.398 23 F -0.164 7.164 24 F -0.129 7.129 25 F -0.164 7.164 26 C -0.103 4.103 27 C -0.088 4.088 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.382 0.618 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 1.412 -0.383 3.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.407 4.407 6 C -0.106 4.106 7 C -0.130 4.130 8 C -0.041 4.041 9 C -0.049 4.049 10 C -0.059 4.059 11 C -0.089 4.089 12 C -0.190 4.190 13 O -0.350 6.350 14 Si 0.763 3.237 15 H -0.171 1.171 16 H -0.177 1.177 17 H -0.169 1.169 18 C -0.098 4.098 19 C -0.200 4.200 20 C 0.078 3.922 21 O -0.220 6.220 22 C 0.511 3.489 23 F -0.146 7.146 24 F -0.110 7.110 25 F -0.147 7.147 26 C -0.121 4.121 27 C -0.106 4.106 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.161 0.839 40 H 0.098 0.902 41 H 0.230 0.770 42 H 0.149 0.851 43 H 0.158 0.842 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.402 0.706 -0.097 2.505 hybrid contribution 0.252 -0.130 0.316 0.425 sum 2.654 0.576 0.219 2.724 Atomic orbital electron populations 1.26126 1.20501 1.04592 1.04453 0.78200 0.66892 0.66135 0.63784 1.26129 1.06447 1.18542 1.04549 1.26133 1.06447 1.08063 1.15058 1.27439 1.03578 0.99468 1.10210 1.20999 0.97419 0.99676 0.92550 1.21285 0.99694 0.93180 0.98851 1.18534 1.00304 0.93371 0.91926 1.18146 0.96537 0.93350 0.96833 1.20960 0.93509 0.98533 0.92903 1.19220 0.97665 0.95776 0.96270 1.24683 0.97674 0.92928 1.03682 1.86507 1.42829 1.32460 1.73180 0.85811 0.80674 0.78815 0.78368 1.17090 1.17735 1.16930 1.20839 0.94432 0.95657 0.98890 1.21372 1.00107 1.02238 0.96301 1.18643 0.86425 0.94445 0.92684 1.86492 1.43798 1.39292 1.52460 1.19409 0.76601 0.78111 0.74763 1.93315 1.89858 1.93924 1.37518 1.93331 1.52870 1.90640 1.74169 1.93312 1.65599 1.59765 1.95975 1.21227 0.98975 0.99479 0.92443 1.20997 0.97342 0.94596 0.97673 0.91166 0.91084 0.91164 0.91049 0.90987 0.91160 0.91169 0.90990 0.91057 0.85911 0.85961 0.83864 0.90204 0.77027 0.85088 0.84232 0.86342 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.46 8.65 101.05 0.87 1.33 16 2 Si 1.06 -2.27 12.31 -169.99 -2.09 -4.36 16 3 C -0.45 0.73 8.52 101.05 0.86 1.59 16 4 C -0.45 0.68 8.52 101.05 0.86 1.54 16 5 C -0.37 -0.11 4.60 -39.52 -0.18 -0.29 16 6 C -0.09 -0.07 9.28 -39.63 -0.37 -0.43 16 7 C -0.11 -0.19 9.51 -39.25 -0.37 -0.56 16 8 C -0.04 -0.10 5.27 -104.91 -0.55 -0.65 16 9 C -0.05 -0.11 5.48 -104.77 -0.57 -0.69 16 10 C -0.04 -0.05 9.14 -39.27 -0.36 -0.41 16 11 C -0.09 -0.08 5.38 -104.65 -0.56 -0.64 16 12 C -0.08 0.09 2.79 36.01 0.10 0.19 16 13 O -0.54 0.39 12.81 -35.23 -0.45 -0.06 16 14 Si 0.94 -1.17 25.13 -169.99 -4.27 -5.44 16 15 H -0.25 0.16 7.11 56.52 0.40 0.56 16 16 H -0.25 0.28 7.11 56.52 0.40 0.68 16 17 H -0.25 -0.03 7.04 56.52 0.40 0.37 16 18 C -0.08 -0.08 8.66 -39.55 -0.34 -0.43 16 19 C -0.18 -0.30 8.25 -39.47 -0.33 -0.63 16 20 C 0.12 0.31 6.40 -38.87 -0.25 0.06 16 21 O -0.30 -0.79 8.75 -19.25 -0.17 -0.96 16 22 C 0.60 0.99 3.42 101.05 0.35 1.34 16 23 F -0.16 -0.29 15.58 2.25 0.04 -0.26 16 24 F -0.13 -0.24 17.53 2.25 0.04 -0.20 16 25 F -0.16 -0.22 15.55 2.25 0.04 -0.18 16 26 C -0.10 -0.23 8.79 -39.25 -0.34 -0.57 16 27 C -0.09 -0.09 9.28 -39.63 -0.37 -0.46 16 28 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 34 H 0.07 -0.11 7.67 -51.93 -0.40 -0.51 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 37 H 0.12 -0.15 7.40 -52.49 -0.39 -0.54 16 38 H 0.12 0.07 8.04 -52.48 -0.42 -0.35 16 39 H 0.14 -0.01 8.04 -52.49 -0.42 -0.43 16 40 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 41 H 0.38 -1.92 8.74 45.56 0.40 -1.53 16 42 H 0.13 -0.06 4.84 -52.49 -0.25 -0.32 16 43 H 0.14 0.09 5.09 -52.49 -0.27 -0.18 16 44 H 0.12 0.20 7.71 -52.49 -0.40 -0.20 16 45 H 0.12 -0.10 7.40 -52.49 -0.39 -0.49 16 LS Contribution 387.15 15.07 5.83 5.83 Total: 0.00 -5.33 387.15 -7.65 -12.98 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -5.05 Total: -7.63 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.56 Total: 0.28 kcal Atomic # 8 Polarization: -0.41 SS G_CDS: -0.62 Total: -1.03 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 0.11 Total: -0.64 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: -6.36 Total: -9.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -5.33 -7.65 -12.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.179 kcal (2) G-P(sol) polarization free energy of solvation -5.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds