Wall clock time and date at job start Mon Mar 8 2021 09:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86302 * 109.47129 * 2 1 4 4 C 1.86302 * 109.47125 * 239.99859 * 2 1 3 5 5 C 1.86803 * 109.46888 * 120.00016 * 2 1 3 6 6 C 1.38324 * 119.87327 * 269.95596 * 5 2 1 7 7 C 1.38011 * 120.12022 * 180.02562 * 6 5 2 8 8 C 1.39365 * 119.87682 * 0.02562 * 7 6 5 9 9 C 1.48330 * 120.12323 * 179.97438 * 8 7 6 10 10 C 1.39259 * 120.15202 * 310.00660 * 9 8 7 11 11 C 1.38052 * 119.93519 * 180.02562 * 10 9 8 12 12 C 1.50701 * 119.88288 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47076 * 64.99715 * 12 11 10 14 14 Si 1.86298 * 109.46943 * 185.00037 * 12 11 10 15 15 H 1.48491 * 109.47445 * 59.99800 * 14 12 11 16 16 H 1.48500 * 109.46841 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47120 * 299.99746 * 14 12 11 18 18 C 1.38342 * 120.23316 * 359.97347 * 11 10 9 19 19 C 1.38231 * 120.30734 * 0.02562 * 18 11 10 20 20 C 1.38541 * 120.05865 * 359.72030 * 19 18 11 21 21 O 1.35845 * 120.11605 * 180.29871 * 20 19 18 22 22 C 1.42905 * 117.00050 * 0.23557 * 21 20 19 23 23 F 1.39897 * 109.46985 * 59.99692 * 22 21 20 24 24 F 1.39900 * 109.46885 * 179.97438 * 22 21 20 25 25 F 1.39904 * 109.46685 * 300.00036 * 22 21 20 26 26 C 1.39358 * 119.75132 * 0.02562 * 8 7 6 27 27 C 1.38011 * 119.87844 * 359.97438 * 26 8 7 28 28 H 1.09000 * 109.47125 * 299.99933 * 1 2 3 29 29 H 1.09004 * 109.46919 * 60.00221 * 1 2 3 30 30 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46954 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.46772 * 300.00186 * 3 2 1 33 33 H 1.09005 * 109.46711 * 59.99705 * 3 2 1 34 34 H 1.08999 * 109.47106 * 300.00419 * 4 2 1 35 35 H 1.08996 * 109.47051 * 60.00284 * 4 2 1 36 36 H 1.09000 * 109.47028 * 179.97438 * 4 2 1 37 37 H 1.08000 * 119.94194 * 0.04326 * 6 5 2 38 38 H 1.08005 * 120.05939 * 180.29917 * 7 6 5 39 39 H 1.08002 * 120.03512 * 0.02562 * 10 9 8 40 40 H 1.08997 * 109.46917 * 305.00143 * 12 11 10 41 41 H 0.96703 * 113.99996 * 179.97438 * 13 12 11 42 42 H 1.08000 * 119.84722 * 180.02562 * 18 11 10 43 43 H 1.07994 * 119.96945 * 180.02562 * 19 18 11 44 44 H 1.08001 * 120.06174 * 179.97438 * 26 8 7 45 45 H 1.07996 * 119.93880 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5253 6 6 2.7162 -0.1665 2.6873 7 6 3.1767 -0.8119 3.8169 8 6 3.4099 -2.1855 3.7853 9 6 3.9054 -2.8845 4.9961 10 6 5.0086 -2.3899 5.6871 11 6 5.4663 -3.0444 6.8131 12 6 6.6607 -2.5085 7.5597 13 8 6.3405 -1.2322 8.1172 14 14 7.1177 -3.6871 8.9282 15 1 7.4503 -5.0132 8.3488 16 1 8.2942 -3.1586 9.6642 17 1 5.9723 -3.8284 9.8628 18 6 4.8324 -4.1905 7.2587 19 6 3.7365 -4.6900 6.5803 20 6 3.2635 -4.0402 5.4519 21 8 2.1828 -4.5267 4.7878 22 6 1.5786 -5.7111 5.3116 23 9 1.1406 -5.4722 6.6186 24 9 0.4876 -6.0703 4.5129 25 9 2.5159 -6.7497 5.3164 26 6 3.1769 -2.8996 2.6115 27 6 2.7165 -2.2439 1.4877 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5740 1.7564 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1208 -0.3644 -2.4111 36 1 3.5741 -0.8779 -1.5213 37 1 2.5352 0.8980 2.7107 38 1 3.3517 -0.2541 4.7251 39 1 5.5058 -1.4952 5.3424 40 1 7.5013 -2.4047 6.8737 41 1 7.0649 -0.8268 8.6133 42 1 5.1954 -4.6973 8.1406 43 1 3.2455 -5.5849 6.9332 44 1 3.3564 -3.9642 2.5812 45 1 2.5352 -2.7965 0.5777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:49 Heat of formation + Delta-G solvation = -209.905019 kcal Electronic energy + Delta-G solvation = -31513.663325 eV Core-core repulsion = 26783.848949 eV Total energy + Delta-G solvation = -4729.814376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 370.112 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.59602 -49.30796 -49.19205 -41.78661 -39.74346 -39.32241 -37.34090 -33.98180 -32.28616 -31.83649 -30.18374 -29.27536 -28.28259 -28.25816 -27.77438 -26.05582 -24.77403 -23.60868 -22.92983 -21.82153 -20.77597 -20.31573 -20.16161 -18.49431 -18.21202 -17.77000 -16.87442 -16.70442 -16.47451 -16.21143 -15.92048 -15.81970 -15.77038 -15.63696 -15.60593 -15.41967 -15.24989 -15.07304 -14.61161 -14.46438 -14.42648 -14.31273 -14.03621 -13.97335 -13.85051 -13.72335 -13.53625 -13.22550 -13.17179 -13.09327 -13.06536 -12.94980 -12.57376 -12.26631 -12.01401 -11.96652 -11.79538 -10.96053 -10.77237 -10.73813 -10.41523 -10.34767 -9.83194 -9.80107 -9.25203 -0.35402 -0.06145 0.28307 0.49032 0.56318 1.14000 1.44741 1.50148 1.65499 1.85966 1.89847 2.05056 2.08910 2.27807 2.60236 2.68485 2.82107 2.94147 3.26751 3.33778 3.51205 3.67092 3.85674 4.00154 4.07586 4.12410 4.21297 4.38480 4.52469 4.61690 4.65830 4.79522 4.81624 4.85505 4.85994 4.90198 4.91002 4.92457 4.92954 4.99398 5.14859 5.19862 5.22173 5.41109 5.58027 5.60057 5.61825 5.67404 5.69161 5.72978 6.13295 6.81662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.125 2.875 3 C -0.459 4.459 4 C -0.462 4.462 5 C -0.376 4.376 6 C -0.097 4.097 7 C -0.124 4.124 8 C -0.056 4.056 9 C -0.057 4.057 10 C -0.044 4.044 11 C -0.094 4.094 12 C -0.077 4.077 13 O -0.561 6.561 14 Si 0.969 3.031 15 H -0.256 1.256 16 H -0.251 1.251 17 H -0.268 1.268 18 C -0.089 4.089 19 C -0.188 4.188 20 C 0.104 3.896 21 O -0.309 6.309 22 C 0.605 3.395 23 F -0.165 7.165 24 F -0.130 7.130 25 F -0.162 7.162 26 C -0.120 4.120 27 C -0.098 4.098 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.154 0.846 40 H 0.103 0.897 41 H 0.400 0.600 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.115 0.885 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.433 2.301 -0.702 4.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.312 2.688 3 C -0.567 4.567 4 C -0.569 4.569 5 C -0.416 4.416 6 C -0.114 4.114 7 C -0.142 4.142 8 C -0.056 4.056 9 C -0.058 4.058 10 C -0.062 4.062 11 C -0.094 4.094 12 C -0.187 4.187 13 O -0.370 6.370 14 Si 0.793 3.207 15 H -0.180 1.180 16 H -0.175 1.175 17 H -0.193 1.193 18 C -0.106 4.106 19 C -0.206 4.206 20 C 0.062 3.938 21 O -0.229 6.229 22 C 0.515 3.485 23 F -0.147 7.147 24 F -0.112 7.112 25 F -0.144 7.144 26 C -0.138 4.138 27 C -0.116 4.116 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.172 0.828 40 H 0.120 0.880 41 H 0.251 0.749 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.133 0.867 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.004 1.594 -0.396 3.424 hybrid contribution 0.067 -0.400 0.435 0.595 sum 3.071 1.194 0.039 3.296 Atomic orbital electron populations 1.26310 1.21867 1.04322 1.04541 0.77205 0.65058 0.64893 0.61635 1.26237 1.06510 1.19002 1.04912 1.26270 1.06478 1.08383 1.15745 1.28058 1.02792 0.99374 1.11331 1.21331 0.96948 1.00777 0.92369 1.21472 1.00042 0.93073 0.99609 1.18677 1.00940 0.93872 0.92102 1.18318 0.96953 0.93439 0.97066 1.21119 0.93254 0.98867 0.92932 1.19527 0.98137 0.95563 0.96204 1.24697 0.97242 0.92864 1.03947 1.86459 1.44381 1.32520 1.73635 0.85413 0.79578 0.78171 0.77488 1.18031 1.17505 1.19322 1.21062 0.94330 0.95989 0.99242 1.21501 1.00441 1.02476 0.96205 1.18813 0.86749 0.94997 0.93259 1.86473 1.44052 1.39574 1.52773 1.19329 0.76516 0.78020 0.74643 1.93308 1.89874 1.93946 1.37588 1.93323 1.52975 1.90653 1.74223 1.93311 1.65530 1.59646 1.95962 1.21349 0.99836 0.99525 0.93074 1.21285 0.97149 0.95254 0.97933 0.91461 0.90626 0.91637 0.91097 0.90632 0.90845 0.91098 0.90621 0.91176 0.83961 0.85354 0.82825 0.87966 0.74892 0.83944 0.83709 0.86734 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.12 8.65 113.37 0.98 2.10 16 2 Si 1.12 -5.56 12.31 68.60 0.84 -4.72 16 3 C -0.46 1.96 8.52 113.37 0.97 2.93 16 4 C -0.46 1.69 8.52 113.37 0.97 2.65 16 5 C -0.38 -0.22 4.60 22.31 0.10 -0.12 16 6 C -0.10 -0.15 9.28 22.24 0.21 0.06 16 7 C -0.12 -0.50 9.51 22.49 0.21 -0.29 16 8 C -0.06 -0.34 5.27 -20.05 -0.11 -0.45 16 9 C -0.06 -0.34 5.48 -19.96 -0.11 -0.45 16 10 C -0.04 -0.13 9.14 22.47 0.21 0.07 16 11 C -0.09 -0.19 5.38 -19.88 -0.11 -0.30 16 12 C -0.08 0.22 2.79 71.24 0.20 0.42 16 13 O -0.56 1.20 12.81 -148.98 -1.91 -0.71 16 14 Si 0.97 -2.67 25.13 68.60 1.72 -0.94 16 15 H -0.26 0.36 7.11 99.48 0.71 1.07 16 16 H -0.25 0.79 7.11 99.48 0.71 1.49 16 17 H -0.27 -0.23 7.04 99.48 0.70 0.47 16 18 C -0.09 -0.25 8.66 22.29 0.19 -0.05 16 19 C -0.19 -0.85 8.25 22.34 0.18 -0.66 16 20 C 0.10 0.68 6.40 22.73 0.15 0.83 16 21 O -0.31 -2.14 8.75 -91.81 -0.80 -2.94 16 22 C 0.61 2.76 3.42 113.37 0.39 3.15 16 23 F -0.17 -0.78 15.58 44.97 0.70 -0.08 16 24 F -0.13 -0.62 17.53 44.97 0.79 0.17 16 25 F -0.16 -0.61 15.55 44.97 0.70 0.09 16 26 C -0.12 -0.69 8.79 22.49 0.20 -0.49 16 27 C -0.10 -0.27 9.28 22.24 0.21 -0.06 16 28 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 29 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 30 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 33 H 0.07 -0.34 7.67 -2.38 -0.02 -0.36 16 34 H 0.07 -0.26 7.67 -2.39 -0.02 -0.28 16 35 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 36 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 37 H 0.14 -0.46 7.40 -2.91 -0.02 -0.48 16 38 H 0.13 0.23 8.04 -2.91 -0.02 0.21 16 39 H 0.15 0.02 8.04 -2.91 -0.02 0.00 16 40 H 0.10 -0.75 7.96 -2.39 -0.02 -0.77 16 41 H 0.40 -4.44 8.74 -74.06 -0.65 -5.09 16 42 H 0.14 -0.06 4.84 -2.91 -0.01 -0.07 16 43 H 0.15 0.36 5.09 -2.91 -0.01 0.35 16 44 H 0.11 0.62 7.71 -2.91 -0.02 0.60 16 45 H 0.14 -0.19 7.40 -2.91 -0.02 -0.21 16 Total: 0.00 -12.62 387.15 8.01 -4.60 By element: Atomic # 1 Polarization: -5.94 SS G_CDS: 1.14 Total: -4.81 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 4.83 Total: 9.33 kcal Atomic # 8 Polarization: -0.94 SS G_CDS: -2.71 Total: -3.65 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 2.19 Total: 0.18 kcal Atomic # 14 Polarization: -8.23 SS G_CDS: 2.57 Total: -5.66 kcal Total: -12.62 8.01 -4.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.303 kcal (2) G-P(sol) polarization free energy of solvation -12.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds