Wall clock time and date at job start Mon Mar 8 2021 09:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 117.00328 * 2 1 4 4 C 1.38544 * 119.96303 * 180.02562 * 3 2 1 5 5 C 1.39303 * 119.92812 * 179.74508 * 4 3 2 6 6 C 1.48403 * 120.06819 * 180.27250 * 5 4 3 7 7 C 1.39334 * 120.11793 * 129.93850 * 6 5 4 8 8 C 1.38012 * 119.87423 * 179.79351 * 7 6 5 9 9 C 1.38318 * 120.12337 * 0.48447 * 8 7 6 10 10 Si 1.86803 * 119.88059 * 179.76824 * 9 8 7 11 11 C 1.86304 * 109.46871 * 269.98125 * 10 9 8 12 12 C 1.86306 * 109.47081 * 29.97698 * 10 9 8 13 13 C 1.86298 * 109.47439 * 149.98046 * 10 9 8 14 14 C 1.38315 * 120.24480 * 359.74978 * 9 8 7 15 15 C 1.38023 * 120.11936 * 0.02562 * 14 9 8 16 16 C 1.39262 * 119.86183 * 0.49074 * 5 4 3 17 17 C 1.50704 * 120.02956 * 179.78889 * 16 5 4 18 18 O 1.42905 * 109.46804 * 232.14660 * 17 16 5 19 19 Si 1.86296 * 109.47144 * 112.14767 * 17 16 5 20 20 H 1.48500 * 109.47464 * 185.79743 * 19 17 16 21 21 H 1.48509 * 109.47006 * 305.79585 * 19 17 16 22 22 H 1.48500 * 109.47109 * 65.79335 * 19 17 16 23 23 C 1.38582 * 119.93289 * 359.51478 * 16 5 4 24 24 O 1.35899 * 119.96490 * 180.25456 * 23 16 5 25 25 C 1.42901 * 117.00099 * 179.97438 * 24 23 16 26 26 C 1.38680 * 120.06869 * 0.22851 * 23 16 5 27 27 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46616 * 300.00077 * 1 2 3 29 29 H 1.08997 * 109.46835 * 59.99583 * 1 2 3 30 30 H 1.08002 * 120.03812 * 0.03262 * 4 3 2 31 31 H 1.07996 * 120.05941 * 0.02562 * 7 6 5 32 32 H 1.08007 * 119.94052 * 180.22990 * 8 7 6 33 33 H 1.08997 * 109.47691 * 60.00113 * 11 10 9 34 34 H 1.09009 * 109.46929 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.47047 * 299.99620 * 11 10 9 36 36 H 1.09001 * 109.46535 * 60.00438 * 12 10 9 37 37 H 1.08997 * 109.46744 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47145 * 300.00272 * 12 10 9 39 39 H 1.08998 * 109.47022 * 59.99414 * 13 10 9 40 40 H 1.08999 * 109.47386 * 180.02562 * 13 10 9 41 41 H 1.08997 * 109.46889 * 300.00057 * 13 10 9 42 42 H 1.07999 * 119.94541 * 179.97438 * 14 9 8 43 43 H 1.07997 * 120.06269 * 180.02562 * 15 14 9 44 44 H 1.08997 * 109.47277 * 352.14714 * 17 16 5 45 45 H 0.96699 * 113.99550 * 180.02562 * 18 17 16 46 46 H 1.08993 * 109.47283 * 300.00035 * 25 24 23 47 47 H 1.08995 * 109.46953 * 60.00361 * 25 24 23 48 48 H 1.08998 * 109.46870 * 179.97438 * 25 24 23 49 49 H 1.08004 * 119.93660 * 180.02562 * 26 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4296 1.2824 -0.0005 5 6 4.0614 2.5239 -0.0059 6 6 5.5432 2.6042 -0.0126 7 6 6.1954 3.4126 -0.9413 8 6 7.5736 3.4868 -0.9402 9 6 8.3075 2.7527 -0.0261 10 14 10.1728 2.8532 -0.0350 11 6 10.8598 1.5443 -1.1688 12 6 10.7013 4.5355 -0.6365 13 6 10.8178 2.5801 1.6914 14 6 7.6655 1.9448 0.8948 15 6 6.2875 1.8667 0.9058 16 6 3.2995 3.6896 -0.0004 17 6 3.9790 5.0348 -0.0014 18 8 3.4608 5.8309 1.0663 19 14 3.6603 5.8903 -1.6253 20 1 4.4427 7.1512 -1.6825 21 1 4.0713 5.0017 -2.7419 22 1 2.2130 6.1999 -1.7460 23 6 1.9159 3.6114 0.0003 24 8 1.1717 4.7486 0.0004 25 6 -0.2489 4.5943 0.0006 26 6 1.2899 2.3740 0.0002 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0178 0.3766 -0.0015 31 1 5.6234 3.9830 -1.6581 32 1 8.0801 4.1160 -1.6572 33 1 10.4826 1.7040 -2.1789 34 1 11.9483 1.6032 -1.1744 35 1 10.5507 0.5601 -0.8169 36 1 10.2993 5.3012 0.0269 37 1 11.7897 4.5939 -0.6421 38 1 10.3240 4.6952 -1.6466 39 1 10.5085 1.5960 2.0433 40 1 11.9061 2.6392 1.6863 41 1 10.4158 3.3459 2.3547 42 1 8.2434 1.3734 1.6061 43 1 5.7871 1.2359 1.6255 44 1 5.0521 4.8998 0.1338 45 1 3.8537 6.7125 1.1259 46 1 -0.5547 4.0443 -0.8894 47 1 -0.5545 4.0442 0.8905 48 1 -0.7211 5.5767 0.0011 49 1 0.2114 2.3155 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:04 Heat of formation + Delta-G solvation = -95.638456 kcal Electronic energy + Delta-G solvation = -28599.157402 eV Core-core repulsion = 24808.440111 eV Total energy + Delta-G solvation = -3790.717290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77262 -40.08097 -39.80390 -37.93625 -36.96916 -33.14325 -32.25395 -31.53803 -30.03336 -29.44669 -28.67293 -28.44929 -28.38821 -28.04352 -25.93616 -24.05668 -23.27733 -22.38687 -21.55482 -19.56286 -18.45881 -17.91000 -17.37704 -17.11151 -16.85743 -16.75478 -16.43530 -16.01630 -15.77758 -15.67446 -15.53040 -14.80325 -14.60881 -14.43679 -14.18243 -14.08197 -14.00011 -13.91747 -13.81207 -13.56555 -13.50051 -13.41240 -13.24355 -13.20944 -13.08106 -12.77217 -12.65485 -12.57058 -12.28406 -12.22620 -12.12466 -11.94169 -11.54021 -11.35672 -10.98139 -10.88483 -10.78768 -10.32010 -9.90842 -9.70618 -9.14303 -8.77829 -0.15362 0.43645 0.58269 0.66875 1.31647 1.52519 1.59451 1.73411 1.87058 1.96968 2.09512 2.23925 2.34916 2.56859 2.66877 3.00494 3.49535 3.68023 3.85057 3.97572 4.05923 4.07979 4.14391 4.16150 4.16636 4.22055 4.24918 4.34063 4.48922 4.53352 4.55926 4.60973 4.66484 4.72200 4.72605 4.74325 4.77320 4.78252 4.78927 4.79457 4.97850 5.12725 5.20405 5.26579 5.35863 5.43141 5.46226 5.53132 5.56118 5.65950 5.69392 5.71487 6.14323 6.20302 6.49867 6.79358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.172 3.828 4 C -0.175 4.175 5 C 0.040 3.960 6 C -0.038 4.038 7 C -0.121 4.121 8 C -0.088 4.088 9 C -0.366 4.366 10 Si 1.058 2.942 11 C -0.449 4.449 12 C -0.450 4.450 13 C -0.450 4.450 14 C -0.086 4.086 15 C -0.108 4.108 16 C -0.139 4.139 17 C -0.064 4.064 18 O -0.535 6.535 19 Si 0.918 3.082 20 H -0.250 1.250 21 H -0.250 1.250 22 H -0.234 1.234 23 C 0.187 3.813 24 O -0.292 6.292 25 C 0.022 3.978 26 C -0.299 4.299 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.374 0.626 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.103 0.897 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 0.242 -0.439 0.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.126 3.874 4 C -0.194 4.194 5 C 0.039 3.961 6 C -0.038 4.038 7 C -0.139 4.139 8 C -0.106 4.106 9 C -0.407 4.407 10 Si 1.250 2.750 11 C -0.557 4.557 12 C -0.557 4.557 13 C -0.557 4.557 14 C -0.103 4.103 15 C -0.126 4.126 16 C -0.140 4.140 17 C -0.173 4.173 18 O -0.340 6.340 19 Si 0.739 3.261 20 H -0.173 1.173 21 H -0.174 1.174 22 H -0.156 1.156 23 C 0.140 3.860 24 O -0.204 6.204 25 C -0.073 4.073 26 C -0.318 4.318 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.097 0.903 45 H 0.221 0.779 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.121 0.879 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.633 0.123 -1.132 1.303 hybrid contribution -0.522 0.136 0.331 0.633 sum -1.156 0.259 -0.801 1.430 Atomic orbital electron populations 1.23114 0.78022 1.04363 1.01435 1.86107 1.21683 1.26499 1.88139 1.18597 0.91812 0.83730 0.93236 1.20264 0.91160 0.97643 1.10317 1.18050 0.91594 0.90823 0.95617 1.18616 0.90540 0.97812 0.96804 1.21351 0.95081 0.98925 0.98554 1.21010 0.93233 0.98248 0.98111 1.27443 1.17157 0.98750 0.97363 0.78196 0.62012 0.67392 0.67381 1.26126 1.06474 1.12522 1.10537 1.26135 1.05845 1.17585 1.06176 1.26135 1.06431 1.04920 1.18241 1.21030 0.93888 0.97573 0.97856 1.21294 0.94244 0.98776 0.98313 1.18430 0.89956 0.93805 1.11762 1.24659 0.99400 0.92339 1.00951 1.86558 1.66897 1.29316 1.51240 0.86197 0.83100 0.80168 0.76630 1.17349 1.17401 1.15640 1.18310 0.90226 0.84945 0.92484 1.86259 1.18620 1.28060 1.87459 1.23121 0.78743 1.04173 1.01231 1.21303 1.00748 0.91766 1.17995 0.87818 0.92494 0.92532 0.84449 0.86268 0.85775 0.91160 0.91086 0.91145 0.91009 0.90977 0.91152 0.91150 0.90997 0.91028 0.85817 0.85805 0.90272 0.77929 0.92744 0.92506 0.87899 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 9.81 101.05 0.99 0.97 16 2 O -0.31 -0.82 10.49 -19.43 -0.20 -1.02 16 3 C 0.17 0.56 6.68 -39.29 -0.26 0.30 16 4 C -0.18 -0.58 9.44 -39.07 -0.37 -0.95 16 5 C 0.04 0.14 5.47 -104.93 -0.57 -0.43 16 6 C -0.04 -0.10 4.82 -104.90 -0.51 -0.61 16 7 C -0.12 -0.23 7.44 -39.26 -0.29 -0.52 16 8 C -0.09 -0.05 9.28 -39.63 -0.37 -0.41 16 9 C -0.37 0.04 4.60 -39.52 -0.18 -0.14 16 10 Si 1.06 -2.62 12.31 -169.99 -2.09 -4.71 16 11 C -0.45 0.64 8.65 101.05 0.87 1.51 16 12 C -0.45 0.84 8.52 101.05 0.86 1.71 16 13 C -0.45 0.79 8.53 101.05 0.86 1.65 16 14 C -0.09 -0.04 9.28 -39.63 -0.37 -0.41 16 15 C -0.11 -0.19 9.50 -39.25 -0.37 -0.56 16 16 C -0.14 -0.55 4.44 -104.11 -0.46 -1.02 16 17 C -0.06 -0.16 2.17 36.01 0.08 -0.09 16 18 O -0.54 -1.44 11.89 -50.12 -0.60 -2.04 16 19 Si 0.92 1.97 24.91 -169.99 -4.23 -2.26 16 20 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 21 H -0.25 -0.63 6.79 56.52 0.38 -0.24 16 22 H -0.23 -0.81 6.63 56.52 0.37 -0.43 16 23 C 0.19 0.73 6.12 -39.29 -0.24 0.49 16 24 O -0.29 -1.00 7.51 -34.31 -0.26 -1.26 16 25 C 0.02 -0.01 9.81 101.05 0.99 0.99 16 26 C -0.30 -0.79 8.02 -39.24 -0.31 -1.10 16 27 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 28 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 29 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 30 H 0.14 0.31 8.03 -52.49 -0.42 -0.11 16 31 H 0.12 0.15 5.06 -52.49 -0.27 -0.11 16 32 H 0.12 -0.20 7.40 -52.48 -0.39 -0.59 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.15 7.67 -51.93 -0.40 -0.54 16 39 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 42 H 0.12 -0.18 7.40 -52.49 -0.39 -0.57 16 43 H 0.12 0.10 8.04 -52.49 -0.42 -0.32 16 44 H 0.08 0.13 4.85 -51.93 -0.25 -0.12 16 45 H 0.37 -0.63 8.74 45.56 0.40 -0.23 16 46 H 0.05 -0.08 7.66 -51.93 -0.40 -0.47 16 47 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 48 H 0.10 -0.18 8.14 -51.93 -0.42 -0.61 16 49 H 0.14 0.04 4.50 -52.48 -0.24 -0.20 16 LS Contribution 392.23 15.07 5.91 5.91 Total: 0.00 -6.84 392.23 -8.07 -14.91 By element: Atomic # 1 Polarization: -3.94 SS G_CDS: -6.94 Total: -10.88 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 0.35 Total: 1.36 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -1.06 Total: -4.32 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -6.33 Total: -6.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -6.84 -8.07 -14.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.731 kcal (2) G-P(sol) polarization free energy of solvation -6.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds