Wall clock time and date at job start Mon Mar 8 2021 09:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 117.00328 * 2 1 4 4 C 1.38544 * 119.96303 * 180.02562 * 3 2 1 5 5 C 1.39303 * 119.92812 * 179.74508 * 4 3 2 6 6 C 1.48403 * 120.06819 * 180.27250 * 5 4 3 7 7 C 1.39334 * 120.11793 * 129.93850 * 6 5 4 8 8 C 1.38012 * 119.87423 * 179.79351 * 7 6 5 9 9 C 1.38318 * 120.12337 * 0.48447 * 8 7 6 10 10 Si 1.86803 * 119.88059 * 179.76824 * 9 8 7 11 11 C 1.86304 * 109.46871 * 269.98125 * 10 9 8 12 12 C 1.86306 * 109.47081 * 29.97698 * 10 9 8 13 13 C 1.86298 * 109.47439 * 149.98046 * 10 9 8 14 14 C 1.38315 * 120.24480 * 359.74978 * 9 8 7 15 15 C 1.38023 * 120.11936 * 0.02562 * 14 9 8 16 16 C 1.39262 * 119.86183 * 0.49074 * 5 4 3 17 17 C 1.50704 * 120.02956 * 179.78889 * 16 5 4 18 18 O 1.42905 * 109.46804 * 232.14660 * 17 16 5 19 19 Si 1.86296 * 109.47144 * 112.14767 * 17 16 5 20 20 H 1.48500 * 109.47464 * 185.79743 * 19 17 16 21 21 H 1.48509 * 109.47006 * 305.79585 * 19 17 16 22 22 H 1.48500 * 109.47109 * 65.79335 * 19 17 16 23 23 C 1.38582 * 119.93289 * 359.51478 * 16 5 4 24 24 O 1.35899 * 119.96490 * 180.25456 * 23 16 5 25 25 C 1.42901 * 117.00099 * 179.97438 * 24 23 16 26 26 C 1.38680 * 120.06869 * 0.22851 * 23 16 5 27 27 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46616 * 300.00077 * 1 2 3 29 29 H 1.08997 * 109.46835 * 59.99583 * 1 2 3 30 30 H 1.08002 * 120.03812 * 0.03262 * 4 3 2 31 31 H 1.07996 * 120.05941 * 0.02562 * 7 6 5 32 32 H 1.08007 * 119.94052 * 180.22990 * 8 7 6 33 33 H 1.08997 * 109.47691 * 60.00113 * 11 10 9 34 34 H 1.09009 * 109.46929 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.47047 * 299.99620 * 11 10 9 36 36 H 1.09001 * 109.46535 * 60.00438 * 12 10 9 37 37 H 1.08997 * 109.46744 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47145 * 300.00272 * 12 10 9 39 39 H 1.08998 * 109.47022 * 59.99414 * 13 10 9 40 40 H 1.08999 * 109.47386 * 180.02562 * 13 10 9 41 41 H 1.08997 * 109.46889 * 300.00057 * 13 10 9 42 42 H 1.07999 * 119.94541 * 179.97438 * 14 9 8 43 43 H 1.07997 * 120.06269 * 180.02562 * 15 14 9 44 44 H 1.08997 * 109.47277 * 352.14714 * 17 16 5 45 45 H 0.96699 * 113.99550 * 180.02562 * 18 17 16 46 46 H 1.08993 * 109.47283 * 300.00035 * 25 24 23 47 47 H 1.08995 * 109.46953 * 60.00361 * 25 24 23 48 48 H 1.08998 * 109.46870 * 179.97438 * 25 24 23 49 49 H 1.08004 * 119.93660 * 180.02562 * 26 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4296 1.2824 -0.0005 5 6 4.0614 2.5239 -0.0059 6 6 5.5432 2.6042 -0.0126 7 6 6.1954 3.4126 -0.9413 8 6 7.5736 3.4868 -0.9402 9 6 8.3075 2.7527 -0.0261 10 14 10.1728 2.8532 -0.0350 11 6 10.8598 1.5443 -1.1688 12 6 10.7013 4.5355 -0.6365 13 6 10.8178 2.5801 1.6914 14 6 7.6655 1.9448 0.8948 15 6 6.2875 1.8667 0.9058 16 6 3.2995 3.6896 -0.0004 17 6 3.9790 5.0348 -0.0014 18 8 3.4608 5.8309 1.0663 19 14 3.6603 5.8903 -1.6253 20 1 4.4427 7.1512 -1.6825 21 1 4.0713 5.0017 -2.7419 22 1 2.2130 6.1999 -1.7460 23 6 1.9159 3.6114 0.0003 24 8 1.1717 4.7486 0.0004 25 6 -0.2489 4.5943 0.0006 26 6 1.2899 2.3740 0.0002 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 4.0178 0.3766 -0.0015 31 1 5.6234 3.9830 -1.6581 32 1 8.0801 4.1160 -1.6572 33 1 10.4826 1.7040 -2.1789 34 1 11.9483 1.6032 -1.1744 35 1 10.5507 0.5601 -0.8169 36 1 10.2993 5.3012 0.0269 37 1 11.7897 4.5939 -0.6421 38 1 10.3240 4.6952 -1.6466 39 1 10.5085 1.5960 2.0433 40 1 11.9061 2.6392 1.6863 41 1 10.4158 3.3459 2.3547 42 1 8.2434 1.3734 1.6061 43 1 5.7871 1.2359 1.6255 44 1 5.0521 4.8998 0.1338 45 1 3.8537 6.7125 1.1259 46 1 -0.5547 4.0443 -0.8894 47 1 -0.5545 4.0442 0.8905 48 1 -0.7211 5.5767 0.0011 49 1 0.2114 2.3155 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:03 Heat of formation + Delta-G solvation = -87.640148 kcal Electronic energy + Delta-G solvation = -28598.810569 eV Core-core repulsion = 24808.440111 eV Total energy + Delta-G solvation = -3790.370458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.91436 -40.14900 -39.92251 -38.05569 -37.11603 -33.24283 -32.34792 -31.61796 -30.09345 -29.32397 -28.66473 -28.29557 -28.22923 -28.04416 -26.05664 -24.15084 -23.32966 -22.54183 -21.65294 -19.66793 -18.60120 -18.03757 -17.41503 -17.23903 -16.95658 -16.90246 -16.49605 -16.06886 -15.88956 -15.73471 -15.63178 -14.84421 -14.72299 -14.47869 -14.13889 -14.02300 -13.94392 -13.91919 -13.70363 -13.60375 -13.47744 -13.39817 -13.08897 -13.07228 -12.92350 -12.79603 -12.66699 -12.61667 -12.39312 -12.32786 -12.23237 -12.00060 -11.65898 -11.47904 -10.86909 -10.75057 -10.71402 -10.45756 -10.00408 -9.77335 -9.25179 -8.96381 -0.28368 0.23782 0.52386 0.56677 1.14894 1.35303 1.40700 1.87320 1.91364 2.06956 2.11324 2.17723 2.27419 2.50368 2.70577 2.95844 3.38845 3.58267 3.73854 3.88313 3.99868 4.03281 4.10744 4.15739 4.21921 4.28371 4.30564 4.32278 4.42362 4.53588 4.56212 4.65080 4.66274 4.69172 4.88548 4.88729 4.89213 4.92815 4.93599 4.94576 4.94793 5.01445 5.09032 5.16363 5.26609 5.29085 5.56762 5.59218 5.62271 5.63985 5.72012 5.75230 6.10130 6.11900 6.38071 6.84086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.164 3.836 4 C -0.188 4.188 5 C 0.034 3.966 6 C -0.054 4.054 7 C -0.134 4.134 8 C -0.095 4.095 9 C -0.374 4.374 10 Si 1.127 2.873 11 C -0.464 4.464 12 C -0.462 4.462 13 C -0.463 4.463 14 C -0.092 4.092 15 C -0.122 4.122 16 C -0.159 4.159 17 C -0.062 4.062 18 O -0.552 6.552 19 Si 0.940 3.060 20 H -0.236 1.236 21 H -0.260 1.260 22 H -0.255 1.255 23 C 0.174 3.826 24 O -0.309 6.309 25 C 0.012 3.988 26 C -0.300 4.300 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.146 0.854 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.143 0.857 43 H 0.125 0.875 44 H 0.085 0.915 45 H 0.391 0.609 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.116 0.884 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 0.505 -0.442 0.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.118 3.882 4 C -0.207 4.207 5 C 0.034 3.966 6 C -0.054 4.054 7 C -0.152 4.152 8 C -0.113 4.113 9 C -0.413 4.413 10 Si 1.314 2.686 11 C -0.570 4.570 12 C -0.569 4.569 13 C -0.570 4.570 14 C -0.110 4.110 15 C -0.140 4.140 16 C -0.160 4.160 17 C -0.172 4.172 18 O -0.360 6.360 19 Si 0.762 3.238 20 H -0.159 1.159 21 H -0.184 1.184 22 H -0.179 1.179 23 C 0.127 3.873 24 O -0.222 6.222 25 C -0.082 4.082 26 C -0.319 4.319 27 H 0.139 0.861 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.137 0.863 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.160 0.840 43 H 0.143 0.857 44 H 0.103 0.897 45 H 0.240 0.760 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.135 0.865 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.116 0.395 -1.130 1.203 hybrid contribution -0.734 0.026 0.338 0.809 sum -0.850 0.421 -0.792 1.236 Atomic orbital electron populations 1.23389 0.76267 1.05843 1.02303 1.86086 1.23605 1.26285 1.88077 1.18728 0.91967 0.84244 0.93252 1.20413 0.91606 0.97838 1.10860 1.18222 0.92244 0.90820 0.95360 1.18709 0.90233 0.98778 0.97682 1.21480 0.95895 0.99164 0.98658 1.21347 0.92825 0.98467 0.98613 1.28076 1.18923 0.97801 0.96540 0.77173 0.59242 0.66136 0.66022 1.26301 1.06893 1.12965 1.10836 1.26263 1.06143 1.18005 1.06490 1.26282 1.06750 1.05020 1.18915 1.21338 0.93549 0.97765 0.98367 1.21447 0.95027 0.99036 0.98476 1.18728 0.90466 0.94579 1.12244 1.24678 0.99497 0.91922 1.01079 1.86510 1.67489 1.30592 1.51380 0.85905 0.81710 0.80254 0.75944 1.15926 1.18422 1.17850 1.18511 0.90509 0.85497 0.92783 1.86227 1.20267 1.28207 1.87474 1.23382 0.77138 1.05468 1.02203 1.21484 1.01781 0.91160 1.17494 0.86124 0.91658 0.91585 0.84238 0.86274 0.83660 0.91403 0.90719 0.91457 0.91082 0.90689 0.90784 0.90950 0.90704 0.91240 0.83963 0.85692 0.89744 0.75994 0.91623 0.91631 0.86530 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.33 -1.97 10.49 -92.44 -0.97 -2.94 16 3 C 0.16 1.29 6.68 22.46 0.15 1.44 16 4 C -0.19 -1.61 9.44 22.60 0.21 -1.40 16 5 C 0.03 0.30 5.47 -20.07 -0.11 0.19 16 6 C -0.05 -0.37 4.82 -20.04 -0.10 -0.46 16 7 C -0.13 -0.63 7.44 22.48 0.17 -0.46 16 8 C -0.09 -0.09 9.28 22.24 0.21 0.11 16 9 C -0.37 0.19 4.60 22.31 0.10 0.29 16 10 Si 1.13 -6.61 12.31 68.60 0.84 -5.77 16 11 C -0.46 1.63 8.65 113.37 0.98 2.61 16 12 C -0.46 2.25 8.52 113.37 0.97 3.22 16 13 C -0.46 2.03 8.53 113.37 0.97 2.99 16 14 C -0.09 -0.11 9.28 22.24 0.21 0.09 16 15 C -0.12 -0.57 9.50 22.48 0.21 -0.36 16 16 C -0.16 -1.52 4.44 -19.53 -0.09 -1.61 16 17 C -0.06 -0.39 2.17 71.24 0.15 -0.24 16 18 O -0.55 -3.47 11.89 -134.74 -1.60 -5.07 16 19 Si 0.94 4.80 24.91 68.60 1.71 6.51 16 20 H -0.24 -0.59 7.11 99.48 0.71 0.12 16 21 H -0.26 -1.62 6.79 99.48 0.68 -0.95 16 22 H -0.25 -2.12 6.63 99.48 0.66 -1.46 16 23 C 0.17 1.57 6.12 22.46 0.14 1.71 16 24 O -0.31 -2.41 7.51 -78.18 -0.59 -3.00 16 25 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 26 C -0.30 -1.85 8.02 22.49 0.18 -1.67 16 27 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 28 H 0.06 -0.25 7.66 -2.38 -0.02 -0.27 16 29 H 0.07 -0.27 7.66 -2.39 -0.02 -0.29 16 30 H 0.14 0.94 8.03 -2.91 -0.02 0.92 16 31 H 0.12 0.46 5.06 -2.91 -0.01 0.44 16 32 H 0.15 -0.59 7.40 -2.91 -0.02 -0.61 16 33 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 34 H 0.07 -0.31 7.96 -2.38 -0.02 -0.32 16 35 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 38 H 0.07 -0.40 7.67 -2.39 -0.02 -0.42 16 39 H 0.07 -0.33 7.67 -2.39 -0.02 -0.35 16 40 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 42 H 0.14 -0.47 7.40 -2.91 -0.02 -0.50 16 43 H 0.13 0.42 8.04 -2.91 -0.02 0.39 16 44 H 0.08 0.38 4.85 -2.39 -0.01 0.37 16 45 H 0.39 -1.13 8.74 -74.06 -0.65 -1.78 16 46 H 0.07 -0.19 7.66 -2.39 -0.02 -0.21 16 47 H 0.07 -0.16 7.66 -2.39 -0.02 -0.17 16 48 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 49 H 0.16 0.10 4.50 -2.91 -0.01 0.08 16 Total: 0.00 -16.56 392.23 6.95 -9.61 By element: Atomic # 1 Polarization: -8.95 SS G_CDS: 0.98 Total: -7.96 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.58 Total: 8.63 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -3.16 Total: -11.01 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: 2.55 Total: 0.74 kcal Total: -16.56 6.95 -9.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.034 kcal (2) G-P(sol) polarization free energy of solvation -16.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds