Wall clock time and date at job start Mon Mar 8 2021 09:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33044 * 119.99725 * 2 1 4 4 C 1.47020 * 119.99970 * 356.03709 * 3 2 1 5 5 C 1.36287 * 125.16506 * 174.23146 * 4 3 2 6 6 C 1.37322 * 114.67809 * 179.97438 * 5 4 3 7 7 C 1.36053 * 114.75105 * 0.02562 * 6 5 4 8 8 C 1.47728 * 125.13330 * 179.97438 * 7 6 5 9 9 C 1.39628 * 120.14949 * 359.72129 * 8 7 6 10 10 C 1.37944 * 119.84635 * 179.74716 * 9 8 7 11 11 C 1.38364 * 120.15103 * 0.53317 * 10 9 8 12 12 Si 1.86799 * 119.85073 * 179.76396 * 11 10 9 13 13 C 1.86299 * 109.47107 * 269.97797 * 12 11 10 14 14 C 1.86299 * 109.46939 * 29.98039 * 12 11 10 15 15 C 1.86307 * 109.47110 * 149.97710 * 12 11 10 16 16 C 1.38371 * 120.30026 * 359.74184 * 11 10 9 17 17 C 1.37946 * 120.15206 * 359.97438 * 16 11 10 18 18 S 1.75824 * 109.72684 * 0.26255 * 7 6 5 19 19 C 1.50695 * 120.00297 * 180.02562 * 2 1 3 20 20 O 1.42903 * 109.46677 * 299.99274 * 19 2 1 21 21 Si 1.86301 * 109.47442 * 59.99473 * 19 2 1 22 22 H 1.48495 * 109.46815 * 60.00038 * 21 19 2 23 23 H 1.48500 * 109.47216 * 180.02562 * 21 19 2 24 24 H 1.48496 * 109.47071 * 300.00382 * 21 19 2 25 25 H 1.09001 * 109.47482 * 65.59585 * 1 2 3 26 26 H 1.08997 * 109.46956 * 185.59316 * 1 2 3 27 27 H 1.09001 * 109.46973 * 305.59343 * 1 2 3 28 28 H 1.07997 * 120.00500 * 176.02470 * 3 2 1 29 29 H 1.08002 * 122.65748 * 0.02562 * 5 4 3 30 30 H 1.07996 * 122.62246 * 180.02562 * 6 5 4 31 31 H 1.08004 * 120.07823 * 359.97438 * 9 8 7 32 32 H 1.07999 * 119.92279 * 180.27597 * 10 9 8 33 33 H 1.08996 * 109.46913 * 59.99868 * 13 12 11 34 34 H 1.09004 * 109.46921 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.47133 * 299.99603 * 13 12 11 36 36 H 1.08996 * 109.47590 * 59.99871 * 14 12 11 37 37 H 1.09003 * 109.46777 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.46840 * 299.99341 * 14 12 11 39 39 H 1.09003 * 109.46784 * 60.00000 * 15 12 11 40 40 H 1.08993 * 109.46978 * 179.97438 * 15 12 11 41 41 H 1.09000 * 109.46826 * 300.00334 * 15 12 11 42 42 H 1.08008 * 119.92573 * 179.97438 * 16 11 10 43 43 H 1.08001 * 120.07337 * 180.02562 * 17 16 11 44 44 H 1.09002 * 109.46999 * 180.02562 * 19 2 1 45 45 H 0.96698 * 113.99750 * 60.00531 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1522 0.0000 4 6 1.4397 2.4239 -0.0880 5 6 2.0007 3.6617 0.0150 6 6 1.1144 4.7042 -0.1000 7 6 -0.1795 4.3328 -0.2975 8 6 -1.3170 5.2628 -0.4510 9 6 -1.1080 6.6421 -0.3919 10 6 -2.1739 7.5050 -0.5412 11 6 -3.4495 7.0063 -0.7381 12 14 -4.8877 8.1822 -0.9327 13 6 -5.6237 8.5453 0.7398 14 6 -4.2924 9.7687 -1.7069 15 6 -6.1816 7.4054 -2.0252 16 6 -3.6644 5.6404 -0.7919 17 6 -2.6067 4.7664 -0.6500 18 16 -0.2944 2.5787 -0.3343 19 6 2.2606 -1.3050 -0.0006 20 8 1.9154 -2.0547 1.1660 21 14 1.8105 -2.2814 -1.5220 22 1 2.1691 -1.5022 -2.7342 23 1 2.5526 -3.5677 -1.5223 24 1 0.3505 -2.5528 -1.5221 25 1 -0.3634 0.4246 -0.9358 26 1 -0.3633 -1.0227 0.1002 27 1 -0.3633 0.5981 0.8357 28 1 3.2502 1.1535 0.0648 29 1 3.0585 3.8107 0.1737 30 1 1.4205 5.7381 -0.0385 31 1 -0.1136 7.0327 -0.2334 32 1 -2.0130 8.5721 -0.5002 33 1 -4.8667 8.9997 1.3790 34 1 -6.4633 9.2311 0.6262 35 1 -5.9721 7.6171 1.1927 36 1 -3.8618 9.5563 -2.6854 37 1 -5.1316 10.4550 -1.8200 38 1 -3.5355 10.2231 -1.0676 39 1 -6.5299 6.4772 -1.5722 40 1 -7.0210 8.0914 -2.1383 41 1 -5.7509 7.1930 -3.0037 42 1 -4.6627 5.2577 -0.9454 43 1 -2.7759 3.7005 -0.6926 44 1 3.3322 -1.1058 0.0000 45 1 0.9747 -2.2685 1.2320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:13 Heat of formation + Delta-G solvation = -20.889283 kcal Electronic energy + Delta-G solvation = -22498.534995 eV Core-core repulsion = 19309.349562 eV Total energy + Delta-G solvation = -3189.185433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07116 -39.15262 -38.14540 -35.85773 -32.79566 -31.93054 -29.84821 -29.44334 -28.55229 -28.45123 -28.41398 -26.54205 -24.54684 -23.37868 -22.59695 -20.51723 -19.75190 -18.32586 -17.88551 -17.20831 -16.50375 -16.30371 -15.92767 -15.57580 -15.43817 -15.17060 -14.77737 -14.39798 -14.36873 -14.27800 -14.19305 -13.97820 -13.94402 -13.85638 -13.53426 -13.40327 -13.28542 -13.24672 -13.17943 -13.10895 -12.92478 -12.72370 -12.41285 -12.17353 -12.04924 -11.85568 -11.40342 -11.25558 -10.91309 -10.90533 -10.84041 -10.51756 -9.81523 -9.75537 -9.40638 -8.44589 -0.72431 0.37824 0.55889 0.63156 1.05373 1.06522 1.28436 1.39346 1.54980 1.71455 1.84652 1.88695 1.96432 2.14040 2.54495 3.03474 3.39727 3.53301 3.71047 3.74908 3.98860 4.05769 4.10140 4.35157 4.40416 4.44780 4.46886 4.55444 4.56989 4.67895 4.69577 4.70883 4.74740 4.75059 4.75613 4.75813 4.76605 4.92013 5.06017 5.14169 5.21968 5.32943 5.39946 5.43752 5.50064 5.53451 5.57321 5.62683 5.63455 5.72012 6.10981 6.47105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.155 4.155 3 C -0.068 4.068 4 C -0.165 4.165 5 C -0.123 4.123 6 C -0.124 4.124 7 C -0.180 4.180 8 C -0.004 4.004 9 C -0.115 4.115 10 C -0.083 4.083 11 C -0.371 4.371 12 Si 1.060 2.940 13 C -0.449 4.449 14 C -0.450 4.450 15 C -0.449 4.449 16 C -0.082 4.082 17 C -0.126 4.126 18 S 0.171 5.829 19 C -0.076 4.076 20 O -0.537 6.537 21 Si 0.945 3.055 22 H -0.249 1.249 23 H -0.248 1.248 24 H -0.249 1.249 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 0.468 -0.824 1.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.088 4.088 4 C -0.282 4.282 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.297 4.297 8 C -0.005 4.005 9 C -0.135 4.135 10 C -0.101 4.101 11 C -0.413 4.413 12 Si 1.251 2.749 13 C -0.557 4.557 14 C -0.557 4.557 15 C -0.557 4.557 16 C -0.100 4.100 17 C -0.145 4.145 18 S 0.443 5.557 19 C -0.186 4.186 20 O -0.342 6.342 21 Si 0.765 3.235 22 H -0.172 1.172 23 H -0.171 1.171 24 H -0.172 1.172 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.441 -1.008 -1.628 3.102 hybrid contribution 1.012 1.263 0.490 1.691 sum -1.429 0.255 -1.138 1.844 Atomic orbital electron populations 1.21018 0.92302 1.03499 1.03530 1.22565 0.95848 0.95475 1.01941 1.20864 0.99036 0.88231 1.00671 1.23582 0.96253 0.97101 1.11298 1.20438 1.01065 0.90474 1.03387 1.20370 0.91306 1.00496 1.03164 1.23975 0.96526 0.99060 1.10147 1.18100 0.90905 0.92068 0.99462 1.21281 0.99423 0.92074 1.00766 1.21011 0.92477 0.99433 0.97195 1.27452 1.08018 1.03205 1.02575 0.78174 0.64145 0.65193 0.67369 1.26126 1.06922 1.05123 1.17491 1.26135 1.06232 1.15960 1.07401 1.26136 1.12132 1.07318 1.10138 1.20972 0.98363 0.93319 0.97337 1.21260 0.92192 0.99462 1.01607 1.84545 1.04359 0.97885 1.68941 1.25004 1.02625 0.92434 0.98539 1.86572 1.30423 1.74221 1.42968 0.85771 0.81366 0.80059 0.76273 1.17249 1.17100 1.17230 0.89956 0.90148 0.89315 0.84591 0.83963 0.84412 0.86012 0.85850 0.91165 0.91048 0.91180 0.91052 0.90958 0.91173 0.91188 0.90953 0.91055 0.85878 0.86509 0.86611 0.77849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.18 7.07 36.01 0.25 0.43 16 2 C -0.16 0.05 4.68 -101.15 -0.47 -0.43 16 3 C -0.07 -0.02 9.68 -37.83 -0.37 -0.39 16 4 C -0.16 -0.25 6.29 -36.73 -0.23 -0.48 16 5 C -0.12 -0.18 10.13 -40.62 -0.41 -0.59 16 6 C -0.12 -0.24 9.66 -40.70 -0.39 -0.63 16 7 C -0.18 -0.46 6.40 -36.49 -0.23 -0.69 16 8 C 0.00 -0.01 5.87 -104.98 -0.62 -0.63 16 9 C -0.12 -0.21 9.54 -39.17 -0.37 -0.58 16 10 C -0.08 -0.06 9.27 -39.64 -0.37 -0.43 16 11 C -0.37 -0.06 4.60 -39.49 -0.18 -0.24 16 12 Si 1.06 -2.50 12.30 -169.99 -2.09 -4.59 16 13 C -0.45 0.61 8.65 101.05 0.87 1.48 16 14 C -0.45 0.76 8.52 101.05 0.86 1.62 16 15 C -0.45 0.77 8.52 101.05 0.86 1.63 16 16 C -0.08 -0.06 9.27 -39.64 -0.37 -0.43 16 17 C -0.13 -0.24 9.60 -39.17 -0.38 -0.62 16 18 S 0.17 0.20 16.61 -107.50 -1.79 -1.58 16 19 C -0.08 0.07 2.80 36.00 0.10 0.17 16 20 O -0.54 -0.03 12.88 -35.23 -0.45 -0.49 16 21 Si 0.94 -0.81 27.16 -169.99 -4.62 -5.43 16 22 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 23 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 24 H -0.25 0.23 7.02 56.52 0.40 0.63 16 25 H 0.08 -0.10 6.28 -39.66 -0.25 -0.35 16 26 H 0.08 -0.25 6.46 -51.93 -0.34 -0.58 16 27 H 0.09 -0.09 6.56 -45.72 -0.30 -0.39 16 28 H 0.14 -0.16 7.87 -52.49 -0.41 -0.57 16 29 H 0.14 -0.05 8.06 -52.49 -0.42 -0.48 16 30 H 0.14 0.05 6.90 -52.49 -0.36 -0.31 16 31 H 0.12 0.04 6.76 -52.48 -0.35 -0.32 16 32 H 0.12 -0.17 7.39 -52.49 -0.39 -0.56 16 33 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 39 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 42 H 0.12 -0.16 7.40 -52.48 -0.39 -0.55 16 43 H 0.12 0.08 7.27 -52.49 -0.38 -0.30 16 44 H 0.12 -0.19 7.64 -51.93 -0.40 -0.59 16 45 H 0.37 -1.27 7.73 45.56 0.35 -0.91 16 LS Contribution 378.14 15.07 5.70 5.70 Total: 0.00 -5.72 378.14 -10.82 -16.54 By element: Atomic # 1 Polarization: -3.22 SS G_CDS: -6.13 Total: -9.35 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.44 Total: -0.79 kcal Atomic # 8 Polarization: -0.03 SS G_CDS: -0.45 Total: -0.49 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: -6.71 Total: -10.02 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -1.79 Total: -1.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -5.72 -10.82 -16.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.348 kcal (2) G-P(sol) polarization free energy of solvation -5.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds