Wall clock time and date at job start Mon Mar 8 2021 09:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33044 * 119.99725 * 2 1 4 4 C 1.47020 * 119.99970 * 356.03709 * 3 2 1 5 5 C 1.36287 * 125.16506 * 174.23146 * 4 3 2 6 6 C 1.37322 * 114.67809 * 179.97438 * 5 4 3 7 7 C 1.36053 * 114.75105 * 0.02562 * 6 5 4 8 8 C 1.47728 * 125.13330 * 179.97438 * 7 6 5 9 9 C 1.39628 * 120.14949 * 359.72129 * 8 7 6 10 10 C 1.37944 * 119.84635 * 179.74716 * 9 8 7 11 11 C 1.38364 * 120.15103 * 0.53317 * 10 9 8 12 12 Si 1.86799 * 119.85073 * 179.76396 * 11 10 9 13 13 C 1.86299 * 109.47107 * 269.97797 * 12 11 10 14 14 C 1.86299 * 109.46939 * 29.98039 * 12 11 10 15 15 C 1.86307 * 109.47110 * 149.97710 * 12 11 10 16 16 C 1.38371 * 120.30026 * 359.74184 * 11 10 9 17 17 C 1.37946 * 120.15206 * 359.97438 * 16 11 10 18 18 S 1.75824 * 109.72684 * 0.26255 * 7 6 5 19 19 C 1.50695 * 120.00297 * 180.02562 * 2 1 3 20 20 O 1.42903 * 109.46677 * 299.99274 * 19 2 1 21 21 Si 1.86301 * 109.47442 * 59.99473 * 19 2 1 22 22 H 1.48495 * 109.46815 * 60.00038 * 21 19 2 23 23 H 1.48500 * 109.47216 * 180.02562 * 21 19 2 24 24 H 1.48496 * 109.47071 * 300.00382 * 21 19 2 25 25 H 1.09001 * 109.47482 * 65.59585 * 1 2 3 26 26 H 1.08997 * 109.46956 * 185.59316 * 1 2 3 27 27 H 1.09001 * 109.46973 * 305.59343 * 1 2 3 28 28 H 1.07997 * 120.00500 * 176.02470 * 3 2 1 29 29 H 1.08002 * 122.65748 * 0.02562 * 5 4 3 30 30 H 1.07996 * 122.62246 * 180.02562 * 6 5 4 31 31 H 1.08004 * 120.07823 * 359.97438 * 9 8 7 32 32 H 1.07999 * 119.92279 * 180.27597 * 10 9 8 33 33 H 1.08996 * 109.46913 * 59.99868 * 13 12 11 34 34 H 1.09004 * 109.46921 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.47133 * 299.99603 * 13 12 11 36 36 H 1.08996 * 109.47590 * 59.99871 * 14 12 11 37 37 H 1.09003 * 109.46777 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.46840 * 299.99341 * 14 12 11 39 39 H 1.09003 * 109.46784 * 60.00000 * 15 12 11 40 40 H 1.08993 * 109.46978 * 179.97438 * 15 12 11 41 41 H 1.09000 * 109.46826 * 300.00334 * 15 12 11 42 42 H 1.08008 * 119.92573 * 179.97438 * 16 11 10 43 43 H 1.08001 * 120.07337 * 180.02562 * 17 16 11 44 44 H 1.09002 * 109.46999 * 180.02562 * 19 2 1 45 45 H 0.96698 * 113.99750 * 60.00531 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1522 0.0000 4 6 1.4397 2.4239 -0.0880 5 6 2.0007 3.6617 0.0150 6 6 1.1144 4.7042 -0.1000 7 6 -0.1795 4.3328 -0.2975 8 6 -1.3170 5.2628 -0.4510 9 6 -1.1080 6.6421 -0.3919 10 6 -2.1739 7.5050 -0.5412 11 6 -3.4495 7.0063 -0.7381 12 14 -4.8877 8.1822 -0.9327 13 6 -5.6237 8.5453 0.7398 14 6 -4.2924 9.7687 -1.7069 15 6 -6.1816 7.4054 -2.0252 16 6 -3.6644 5.6404 -0.7919 17 6 -2.6067 4.7664 -0.6500 18 16 -0.2944 2.5787 -0.3343 19 6 2.2606 -1.3050 -0.0006 20 8 1.9154 -2.0547 1.1660 21 14 1.8105 -2.2814 -1.5220 22 1 2.1691 -1.5022 -2.7342 23 1 2.5526 -3.5677 -1.5223 24 1 0.3505 -2.5528 -1.5221 25 1 -0.3634 0.4246 -0.9358 26 1 -0.3633 -1.0227 0.1002 27 1 -0.3633 0.5981 0.8357 28 1 3.2502 1.1535 0.0648 29 1 3.0585 3.8107 0.1737 30 1 1.4205 5.7381 -0.0385 31 1 -0.1136 7.0327 -0.2334 32 1 -2.0130 8.5721 -0.5002 33 1 -4.8667 8.9997 1.3790 34 1 -6.4633 9.2311 0.6262 35 1 -5.9721 7.6171 1.1927 36 1 -3.8618 9.5563 -2.6854 37 1 -5.1316 10.4550 -1.8200 38 1 -3.5355 10.2231 -1.0676 39 1 -6.5299 6.4772 -1.5722 40 1 -7.0210 8.0914 -2.1383 41 1 -5.7509 7.1930 -3.0037 42 1 -4.6627 5.2577 -0.9454 43 1 -2.7759 3.7005 -0.6926 44 1 3.3322 -1.1058 0.0000 45 1 0.9747 -2.2685 1.2320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:12 Heat of formation + Delta-G solvation = -9.600634 kcal Electronic energy + Delta-G solvation = -22498.045482 eV Core-core repulsion = 19309.349562 eV Total energy + Delta-G solvation = -3188.695920 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.10657 -39.12933 -38.16994 -35.83569 -32.82096 -31.96101 -29.81072 -29.32922 -28.49639 -28.29118 -28.26623 -26.55718 -24.58157 -23.41080 -22.64450 -20.51021 -19.78725 -18.31492 -17.86917 -17.22653 -16.49244 -16.28620 -15.93451 -15.60951 -15.42403 -15.15595 -14.75618 -14.39461 -14.33859 -14.26337 -14.06575 -13.92813 -13.83715 -13.73770 -13.54387 -13.35509 -13.19688 -13.11272 -13.10381 -12.96710 -12.89534 -12.71865 -12.40641 -12.16531 -12.04608 -11.81552 -11.42335 -11.25837 -10.82276 -10.79947 -10.75274 -10.47914 -9.87505 -9.76452 -9.47764 -8.49843 -0.78664 0.34852 0.49988 0.57170 0.98484 1.07832 1.29845 1.44725 1.58052 1.84646 1.91036 2.02444 2.03327 2.17692 2.67179 2.98586 3.47061 3.62487 3.69395 3.79582 3.97253 4.04798 4.14314 4.39357 4.41492 4.43942 4.51233 4.53938 4.64502 4.70868 4.84715 4.84900 4.85069 4.87071 4.89059 4.89678 4.90487 4.91749 5.02253 5.11974 5.19395 5.30314 5.39797 5.51940 5.55822 5.59252 5.60400 5.67989 5.68174 5.70985 6.09114 6.69160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.150 4.150 3 C -0.084 4.084 4 C -0.172 4.172 5 C -0.136 4.136 6 C -0.133 4.133 7 C -0.203 4.203 8 C -0.023 4.023 9 C -0.132 4.132 10 C -0.093 4.093 11 C -0.382 4.382 12 Si 1.128 2.872 13 C -0.463 4.463 14 C -0.462 4.462 15 C -0.462 4.462 16 C -0.092 4.092 17 C -0.143 4.143 18 S 0.182 5.818 19 C -0.074 4.074 20 O -0.552 6.552 21 Si 0.978 3.022 22 H -0.267 1.267 23 H -0.268 1.268 24 H -0.244 1.244 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.142 0.858 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 0.520 -0.794 2.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.104 4.104 4 C -0.289 4.289 5 C -0.166 4.166 6 C -0.162 4.162 7 C -0.320 4.320 8 C -0.025 4.025 9 C -0.152 4.152 10 C -0.111 4.111 11 C -0.421 4.421 12 Si 1.315 2.685 13 C -0.569 4.569 14 C -0.569 4.569 15 C -0.569 4.569 16 C -0.110 4.110 17 C -0.162 4.162 18 S 0.453 5.547 19 C -0.184 4.184 20 O -0.360 6.360 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.193 1.193 24 H -0.167 1.167 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.104 0.896 28 H 0.166 0.834 29 H 0.174 0.826 30 H 0.164 0.836 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.059 -0.960 -1.587 3.577 hybrid contribution 1.196 1.203 0.483 1.763 sum -1.863 0.242 -1.104 2.179 Atomic orbital electron populations 1.21120 0.91853 1.04782 1.03345 1.22740 0.96356 0.95520 1.00752 1.21054 0.99780 0.87975 1.01571 1.23844 0.96491 0.97681 1.10916 1.20647 1.01828 0.90403 1.03765 1.20571 0.91341 1.01178 1.03108 1.24209 0.96890 0.99936 1.10934 1.18303 0.91302 0.92594 1.00305 1.21517 1.00290 0.92153 1.01221 1.21345 0.92512 1.00379 0.96843 1.28098 1.08940 1.03654 1.01450 0.77153 0.62027 0.63427 0.65895 1.26291 1.07192 1.05131 1.18319 1.26273 1.06557 1.16639 1.07443 1.26271 1.12636 1.07732 1.10257 1.21305 0.98988 0.93666 0.97038 1.21468 0.92471 1.00068 1.02199 1.84410 1.04376 0.97142 1.68771 1.25024 1.03091 0.91965 0.98272 1.86543 1.31935 1.74265 1.43218 0.85301 0.81074 0.78383 0.75222 1.19109 1.19292 1.16721 0.90004 0.88079 0.89584 0.83377 0.82564 0.83615 0.85348 0.83981 0.91452 0.90606 0.91449 0.91313 0.90600 0.90905 0.90903 0.90588 0.91310 0.84016 0.86093 0.85924 0.76237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.41 7.07 71.24 0.50 0.92 16 2 C -0.15 0.12 4.68 -17.61 -0.08 0.04 16 3 C -0.08 -0.07 9.68 23.41 0.23 0.15 16 4 C -0.17 -0.64 6.29 24.12 0.15 -0.49 16 5 C -0.14 -0.52 10.13 21.60 0.22 -0.30 16 6 C -0.13 -0.68 9.66 21.55 0.21 -0.47 16 7 C -0.20 -1.33 6.40 24.27 0.16 -1.18 16 8 C -0.02 -0.16 5.87 -20.10 -0.12 -0.28 16 9 C -0.13 -0.62 9.54 22.54 0.22 -0.41 16 10 C -0.09 -0.17 9.27 22.23 0.21 0.04 16 11 C -0.38 -0.13 4.60 22.33 0.10 -0.03 16 12 Si 1.13 -6.05 12.30 68.60 0.84 -5.21 16 13 C -0.46 1.50 8.65 113.37 0.98 2.48 16 14 C -0.46 1.89 8.52 113.37 0.97 2.86 16 15 C -0.46 1.92 8.52 113.37 0.97 2.89 16 16 C -0.09 -0.18 9.27 22.23 0.21 0.03 16 17 C -0.14 -0.72 9.60 22.54 0.22 -0.50 16 18 S 0.18 0.61 16.61 -56.49 -0.94 -0.32 16 19 C -0.07 0.16 2.80 71.23 0.20 0.36 16 20 O -0.55 0.31 12.88 -148.98 -1.92 -1.61 16 21 Si 0.98 -1.85 27.16 68.60 1.86 0.01 16 22 H -0.27 -0.25 7.11 99.48 0.71 0.46 16 23 H -0.27 -0.40 7.11 99.48 0.71 0.31 16 24 H -0.24 0.69 7.02 99.48 0.70 1.39 16 25 H 0.08 -0.19 6.28 -10.19 -0.06 -0.25 16 26 H 0.10 -0.73 6.46 -2.39 -0.02 -0.74 16 27 H 0.09 -0.15 6.56 -6.33 -0.04 -0.20 16 28 H 0.15 -0.35 7.87 -2.91 -0.02 -0.37 16 29 H 0.16 -0.03 8.06 -2.91 -0.02 -0.05 16 30 H 0.15 0.31 6.90 -2.91 -0.02 0.29 16 31 H 0.13 0.25 6.76 -2.91 -0.02 0.23 16 32 H 0.14 -0.42 7.39 -2.91 -0.02 -0.44 16 33 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 34 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 35 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 36 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 37 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 38 H 0.07 -0.33 7.67 -2.39 -0.02 -0.34 16 39 H 0.07 -0.33 7.67 -2.39 -0.02 -0.35 16 40 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 42 H 0.14 -0.40 7.40 -2.91 -0.02 -0.42 16 43 H 0.12 0.34 7.27 -2.91 -0.02 0.32 16 44 H 0.12 -0.46 7.64 -2.39 -0.02 -0.48 16 45 H 0.39 -2.98 7.73 -74.06 -0.57 -3.55 16 Total: 0.00 -13.41 378.14 6.25 -7.15 By element: Atomic # 1 Polarization: -7.22 SS G_CDS: 1.08 Total: -6.14 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.32 Total: 6.11 kcal Atomic # 8 Polarization: 0.31 SS G_CDS: -1.92 Total: -1.61 kcal Atomic # 14 Polarization: -7.90 SS G_CDS: 2.71 Total: -5.19 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -0.94 Total: -0.32 kcal Total: -13.41 6.25 -7.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.447 kcal (2) G-P(sol) polarization free energy of solvation -13.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds