Wall clock time and date at job start Mon Mar 8 2021 09:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86304 * 109.46851 * 2 1 4 4 C 1.86295 * 109.46987 * 240.00389 * 2 1 3 5 5 C 1.86798 * 109.47155 * 120.00019 * 2 1 3 6 6 C 1.38327 * 119.87571 * 90.00167 * 5 2 1 7 7 C 1.38012 * 120.12247 * 180.02562 * 6 5 2 8 8 C 1.39349 * 119.87440 * 359.97417 * 7 6 5 9 9 C 1.48364 * 120.12102 * 179.97438 * 8 7 6 10 10 C 1.39354 * 120.06668 * 303.36632 * 9 8 7 11 11 C 1.37927 * 119.93496 * 179.97438 * 10 9 8 12 12 C 1.38811 * 120.06358 * 0.02562 * 11 10 9 13 13 O 1.35874 * 119.93277 * 179.97438 * 12 11 10 14 14 C 1.42898 * 117.00313 * 0.02562 * 13 12 11 15 15 F 1.39903 * 109.46928 * 299.99720 * 14 13 12 16 16 F 1.39907 * 109.47034 * 59.99332 * 14 13 12 17 17 C 1.38851 * 120.13436 * 0.02562 * 12 11 10 18 18 C 1.37888 * 120.06360 * 359.71444 * 17 12 11 19 19 C 1.50701 * 120.03385 * 180.27976 * 18 17 12 20 20 O 1.42901 * 109.46895 * 105.37035 * 19 18 17 21 21 Si 1.86294 * 109.47338 * 345.36645 * 19 18 17 22 22 H 1.48504 * 109.47156 * 59.99738 * 21 19 18 23 23 H 1.48500 * 109.47068 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46870 * 300.00024 * 21 19 18 25 25 C 1.39358 * 119.76154 * 359.97438 * 8 7 6 26 26 C 1.38020 * 119.86851 * 0.03447 * 25 8 7 27 27 H 1.08996 * 109.47135 * 299.99771 * 1 2 3 28 28 H 1.08996 * 109.47254 * 60.00193 * 1 2 3 29 29 H 1.09000 * 109.46549 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47024 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47034 * 299.99942 * 3 2 1 32 32 H 1.09001 * 109.46724 * 59.99842 * 3 2 1 33 33 H 1.09000 * 109.47375 * 299.99370 * 4 2 1 34 34 H 1.08996 * 109.47599 * 59.99629 * 4 2 1 35 35 H 1.09003 * 109.46675 * 179.97438 * 4 2 1 36 36 H 1.08006 * 119.93618 * 359.97438 * 6 5 2 37 37 H 1.08001 * 120.05936 * 179.70536 * 7 6 5 38 38 H 1.07998 * 120.03167 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.96967 * 180.02562 * 11 10 9 40 40 H 1.08993 * 109.47279 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.97322 * 180.02562 * 17 12 11 42 42 H 1.08998 * 109.47008 * 225.36336 * 19 18 17 43 43 H 0.96701 * 113.99792 * 299.99969 * 20 19 18 44 44 H 1.07992 * 120.06556 * 180.02562 * 25 8 7 45 45 H 1.08005 * 119.93460 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7155 -2.2441 1.4881 7 6 3.1750 -2.9000 2.6121 8 6 3.4081 -2.1858 3.7857 9 6 3.9015 -2.8854 4.9974 10 6 3.1836 -3.9562 5.5264 11 6 3.6451 -4.6050 6.6527 12 6 4.8233 -4.1918 7.2595 13 8 5.2752 -4.8325 8.3692 14 6 4.4882 -5.9218 8.8553 15 9 3.2076 -5.4626 9.1817 16 9 4.3925 -6.9060 7.8656 17 6 5.5402 -3.1245 6.7354 18 6 5.0866 -2.4755 5.6065 19 6 5.8686 -1.3212 5.0346 20 8 6.5459 -1.7452 3.8498 21 14 7.1167 -0.7352 6.2874 22 1 8.0448 -1.8461 6.6186 23 1 7.8877 0.4019 5.7235 24 1 6.4128 -0.2946 7.5185 25 6 3.1760 -0.8120 3.8172 26 6 2.7162 -0.1665 2.6872 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.5740 1.7566 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1208 -1.9058 -1.5212 34 1 2.1207 -0.3643 -2.4111 35 1 3.5740 -0.8777 -1.5213 36 1 2.5340 -2.7967 0.5779 37 1 3.3495 -3.9654 2.5833 38 1 2.2667 -4.2778 5.0549 39 1 3.0894 -5.4352 7.0629 40 1 4.9604 -6.3437 9.7424 41 1 6.4567 -2.8055 7.2093 42 1 5.1874 -0.5058 4.7915 43 1 7.1698 -2.4702 3.9916 44 1 3.3553 -0.2537 4.7240 45 1 2.5364 0.8982 2.7103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_12419882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:39 Heat of formation + Delta-G solvation = -170.329991 kcal Electronic energy + Delta-G solvation = -28806.765295 eV Core-core repulsion = 24548.120997 eV Total energy + Delta-G solvation = -4258.644298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.44300 -48.42549 -41.48776 -40.00817 -38.69471 -37.28103 -33.22498 -32.85531 -31.74409 -29.93201 -29.33578 -28.39652 -28.36790 -27.25247 -26.78655 -24.29022 -23.24507 -22.81032 -21.92397 -20.05734 -19.27949 -19.00480 -18.27723 -17.94181 -16.88461 -16.72792 -16.42894 -16.10451 -15.75673 -15.60054 -15.50583 -15.25881 -15.01927 -14.92867 -14.73977 -14.63875 -14.25474 -14.19537 -14.11195 -14.02622 -13.95092 -13.80069 -13.49324 -13.28102 -13.21360 -13.20620 -13.05732 -12.92725 -12.72460 -12.54672 -12.16813 -11.95487 -11.89117 -11.69539 -10.97993 -10.85297 -10.73422 -10.40773 -10.11029 -9.85614 -9.65536 -9.02851 -0.10637 0.12423 0.59992 0.66828 1.10111 1.37999 1.40849 1.49930 1.78858 1.88337 1.90636 2.01063 2.37164 2.47375 2.60801 3.03868 3.19101 3.43011 3.52547 3.61740 3.65910 3.68966 4.03472 4.07794 4.13246 4.21226 4.34414 4.49788 4.59911 4.72029 4.74602 4.76017 4.78720 4.79820 4.80561 4.80706 4.84668 4.95363 5.04781 5.15982 5.23971 5.32533 5.38752 5.47750 5.55999 5.57473 5.60193 5.72608 5.75707 5.92935 6.23095 6.55086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.058 2.942 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.368 4.368 6 C -0.085 4.085 7 C -0.113 4.113 8 C -0.026 4.026 9 C -0.044 4.044 10 C -0.066 4.066 11 C -0.182 4.182 12 C 0.112 3.888 13 O -0.320 6.320 14 C 0.412 3.588 15 F -0.197 7.197 16 F -0.197 7.197 17 C -0.142 4.142 18 C -0.074 4.074 19 C -0.083 4.083 20 O -0.527 6.527 21 Si 0.940 3.060 22 H -0.249 1.249 23 H -0.249 1.249 24 H -0.246 1.246 25 C -0.119 4.119 26 C -0.085 4.085 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.185 0.815 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.374 0.626 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -0.314 0.655 0.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.410 4.410 6 C -0.103 4.103 7 C -0.131 4.131 8 C -0.026 4.026 9 C -0.045 4.045 10 C -0.084 4.084 11 C -0.200 4.200 12 C 0.069 3.931 13 O -0.238 6.238 14 C 0.322 3.678 15 F -0.179 7.179 16 F -0.179 7.179 17 C -0.160 4.160 18 C -0.074 4.074 19 C -0.193 4.193 20 O -0.331 6.331 21 Si 0.762 3.238 22 H -0.173 1.173 23 H -0.173 1.173 24 H -0.170 1.170 25 C -0.137 4.137 26 C -0.103 4.103 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.201 0.799 41 H 0.154 0.846 42 H 0.141 0.859 43 H 0.221 0.779 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.528 0.439 1.149 1.339 hybrid contribution -0.267 -1.045 0.186 1.094 sum 0.261 -0.606 1.336 1.490 Atomic orbital electron populations 1.26129 1.20590 1.04512 1.04409 0.78186 0.66745 0.66164 0.63911 1.26133 1.06524 1.18576 1.04465 1.26135 1.06518 1.08002 1.15059 1.27354 1.04115 0.99456 1.10069 1.20976 0.97148 0.94608 0.97543 1.21198 0.99812 0.99513 0.92547 1.18564 0.98599 0.93241 0.92236 1.18647 0.94340 0.96199 0.95278 1.21076 0.99211 0.93677 0.94478 1.21544 0.96550 1.03036 0.98878 1.18764 0.93955 0.93481 0.86869 1.86631 1.49793 1.44987 1.42346 1.23422 0.77792 0.77556 0.89048 1.93115 1.43030 1.89057 1.92658 1.93115 1.96006 1.62981 1.65776 1.20281 1.01585 0.96496 0.97622 1.20128 0.95490 0.97591 0.94192 1.25147 1.01048 0.97583 0.95564 1.86584 1.59139 1.56607 1.30802 0.85839 0.79073 0.81105 0.77786 1.17267 1.17284 1.16951 1.21204 1.00374 0.93441 0.98636 1.20970 0.97230 0.99531 0.92600 0.91203 0.91129 0.91217 0.90999 0.91053 0.91210 0.91223 0.91058 0.91016 0.86168 0.86423 0.84767 0.84410 0.79885 0.84554 0.85875 0.77923 0.86314 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.49 8.65 101.05 0.87 1.36 16 2 Si 1.06 -2.09 12.31 -169.99 -2.09 -4.18 16 3 C -0.45 0.58 8.52 101.05 0.86 1.45 16 4 C -0.45 0.55 8.52 101.05 0.86 1.41 16 5 C -0.37 -0.15 4.60 -39.52 -0.18 -0.33 16 6 C -0.08 -0.08 9.28 -39.63 -0.37 -0.45 16 7 C -0.11 -0.20 9.63 -39.25 -0.38 -0.58 16 8 C -0.03 -0.06 4.85 -104.90 -0.51 -0.56 16 9 C -0.04 -0.09 5.40 -104.88 -0.57 -0.65 16 10 C -0.07 -0.11 9.62 -39.28 -0.38 -0.48 16 11 C -0.18 -0.34 8.24 -39.48 -0.33 -0.67 16 12 C 0.11 0.24 6.49 -39.14 -0.25 -0.02 16 13 O -0.32 -0.33 10.43 -19.35 -0.20 -0.53 16 14 C 0.41 -0.54 5.98 101.05 0.60 0.06 16 15 F -0.20 -0.09 15.57 2.25 0.04 -0.06 16 16 F -0.20 -0.08 15.57 2.25 0.04 -0.05 16 17 C -0.14 -0.22 8.59 -39.48 -0.34 -0.56 16 18 C -0.07 -0.11 5.26 -104.31 -0.55 -0.65 16 19 C -0.08 -0.04 2.07 36.01 0.07 0.03 16 20 O -0.53 -0.56 12.82 -35.23 -0.45 -1.01 16 21 Si 0.94 -0.02 25.48 -169.99 -4.33 -4.35 16 22 H -0.25 0.03 6.74 56.52 0.38 0.41 16 23 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 24 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 25 C -0.12 -0.19 7.95 -39.24 -0.31 -0.50 16 26 C -0.09 -0.07 9.28 -39.63 -0.37 -0.44 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 30 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.11 7.67 -51.93 -0.40 -0.50 16 33 H 0.07 -0.10 7.67 -51.93 -0.40 -0.50 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 36 H 0.12 -0.10 7.40 -52.48 -0.39 -0.49 16 37 H 0.12 0.10 8.06 -52.49 -0.42 -0.33 16 38 H 0.13 0.03 8.06 -52.49 -0.42 -0.39 16 39 H 0.14 0.19 5.08 -52.49 -0.27 -0.08 16 40 H 0.18 -1.10 8.14 -51.93 -0.42 -1.52 16 41 H 0.14 0.06 4.88 -52.49 -0.26 -0.20 16 42 H 0.12 0.03 4.94 -51.93 -0.26 -0.23 16 43 H 0.37 -0.78 8.70 45.56 0.40 -0.38 16 44 H 0.12 0.02 7.01 -52.49 -0.37 -0.35 16 45 H 0.12 -0.14 7.40 -52.48 -0.39 -0.53 16 LS Contribution 376.78 15.07 5.68 5.68 Total: 0.00 -6.34 376.78 -7.88 -14.22 By element: Atomic # 1 Polarization: -2.84 SS G_CDS: -5.30 Total: -8.15 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.25 Total: -1.58 kcal Atomic # 8 Polarization: -0.89 SS G_CDS: -0.65 Total: -1.54 kcal Atomic # 9 Polarization: -0.18 SS G_CDS: 0.07 Total: -0.11 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: -6.42 Total: -8.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -6.34 -7.88 -14.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.107 kcal (2) G-P(sol) polarization free energy of solvation -6.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds