Wall clock time and date at job start Mon Mar 8 2021 09:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86304 * 109.46851 * 2 1 4 4 C 1.86295 * 109.46987 * 240.00389 * 2 1 3 5 5 C 1.86798 * 109.47155 * 120.00019 * 2 1 3 6 6 C 1.38327 * 119.87571 * 90.00167 * 5 2 1 7 7 C 1.38012 * 120.12247 * 180.02562 * 6 5 2 8 8 C 1.39349 * 119.87440 * 359.97417 * 7 6 5 9 9 C 1.48364 * 120.12102 * 179.97438 * 8 7 6 10 10 C 1.39354 * 120.06668 * 303.36632 * 9 8 7 11 11 C 1.37927 * 119.93496 * 179.97438 * 10 9 8 12 12 C 1.38811 * 120.06358 * 0.02562 * 11 10 9 13 13 O 1.35874 * 119.93277 * 179.97438 * 12 11 10 14 14 C 1.42898 * 117.00313 * 0.02562 * 13 12 11 15 15 F 1.39903 * 109.46928 * 299.99720 * 14 13 12 16 16 F 1.39907 * 109.47034 * 59.99332 * 14 13 12 17 17 C 1.38851 * 120.13436 * 0.02562 * 12 11 10 18 18 C 1.37888 * 120.06360 * 359.71444 * 17 12 11 19 19 C 1.50701 * 120.03385 * 180.27976 * 18 17 12 20 20 O 1.42901 * 109.46895 * 105.37035 * 19 18 17 21 21 Si 1.86294 * 109.47338 * 345.36645 * 19 18 17 22 22 H 1.48504 * 109.47156 * 59.99738 * 21 19 18 23 23 H 1.48500 * 109.47068 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46870 * 300.00024 * 21 19 18 25 25 C 1.39358 * 119.76154 * 359.97438 * 8 7 6 26 26 C 1.38020 * 119.86851 * 0.03447 * 25 8 7 27 27 H 1.08996 * 109.47135 * 299.99771 * 1 2 3 28 28 H 1.08996 * 109.47254 * 60.00193 * 1 2 3 29 29 H 1.09000 * 109.46549 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47024 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47034 * 299.99942 * 3 2 1 32 32 H 1.09001 * 109.46724 * 59.99842 * 3 2 1 33 33 H 1.09000 * 109.47375 * 299.99370 * 4 2 1 34 34 H 1.08996 * 109.47599 * 59.99629 * 4 2 1 35 35 H 1.09003 * 109.46675 * 179.97438 * 4 2 1 36 36 H 1.08006 * 119.93618 * 359.97438 * 6 5 2 37 37 H 1.08001 * 120.05936 * 179.70536 * 7 6 5 38 38 H 1.07998 * 120.03167 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.96967 * 180.02562 * 11 10 9 40 40 H 1.08993 * 109.47279 * 179.97438 * 14 13 12 41 41 H 1.07995 * 119.97322 * 180.02562 * 17 12 11 42 42 H 1.08998 * 109.47008 * 225.36336 * 19 18 17 43 43 H 0.96701 * 113.99792 * 299.99969 * 20 19 18 44 44 H 1.07992 * 120.06556 * 180.02562 * 25 8 7 45 45 H 1.08005 * 119.93460 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7155 -2.2441 1.4881 7 6 3.1750 -2.9000 2.6121 8 6 3.4081 -2.1858 3.7857 9 6 3.9015 -2.8854 4.9974 10 6 3.1836 -3.9562 5.5264 11 6 3.6451 -4.6050 6.6527 12 6 4.8233 -4.1918 7.2595 13 8 5.2752 -4.8325 8.3692 14 6 4.4882 -5.9218 8.8553 15 9 3.2076 -5.4626 9.1817 16 9 4.3925 -6.9060 7.8656 17 6 5.5402 -3.1245 6.7354 18 6 5.0866 -2.4755 5.6065 19 6 5.8686 -1.3212 5.0346 20 8 6.5459 -1.7452 3.8498 21 14 7.1167 -0.7352 6.2874 22 1 8.0448 -1.8461 6.6186 23 1 7.8877 0.4019 5.7235 24 1 6.4128 -0.2946 7.5185 25 6 3.1760 -0.8120 3.8172 26 6 2.7162 -0.1665 2.6872 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.5740 1.7566 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1208 -1.9058 -1.5212 34 1 2.1207 -0.3643 -2.4111 35 1 3.5740 -0.8777 -1.5213 36 1 2.5340 -2.7967 0.5779 37 1 3.3495 -3.9654 2.5833 38 1 2.2667 -4.2778 5.0549 39 1 3.0894 -5.4352 7.0629 40 1 4.9604 -6.3437 9.7424 41 1 6.4567 -2.8055 7.2093 42 1 5.1874 -0.5058 4.7915 43 1 7.1698 -2.4702 3.9916 44 1 3.3553 -0.2537 4.7240 45 1 2.5364 0.8982 2.7103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_12419882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:38 Heat of formation + Delta-G solvation = -161.584280 kcal Electronic energy + Delta-G solvation = -28806.386053 eV Core-core repulsion = 24548.120997 eV Total energy + Delta-G solvation = -4258.265056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.39556 -48.39149 -41.55325 -40.03989 -38.73096 -37.33608 -33.27753 -32.93964 -31.78539 -29.93252 -29.25741 -28.27530 -28.24930 -27.26713 -26.76619 -24.35887 -23.28734 -22.86240 -21.97582 -20.07083 -19.24276 -18.96484 -18.29168 -17.99907 -16.90868 -16.76561 -16.47064 -16.15444 -15.79508 -15.64482 -15.53410 -15.28965 -15.01686 -14.98230 -14.72323 -14.68323 -14.26220 -14.14456 -14.07612 -13.96684 -13.88089 -13.70961 -13.49927 -13.21489 -13.12636 -13.09217 -12.97059 -12.93473 -12.77237 -12.57256 -12.21610 -12.00097 -11.91518 -11.72964 -10.88941 -10.73168 -10.71571 -10.44551 -10.21226 -9.91539 -9.71961 -9.10318 -0.19732 0.02305 0.53811 0.60319 1.08242 1.37603 1.46841 1.48937 1.84873 1.89430 2.05660 2.12685 2.38331 2.48189 2.70419 2.99429 3.38306 3.41665 3.58732 3.61061 3.63307 3.64378 3.96457 4.02497 4.09361 4.18003 4.27271 4.46475 4.57297 4.69202 4.76195 4.86099 4.86572 4.87477 4.90692 4.91392 4.92281 4.93467 4.97270 5.09031 5.19862 5.25356 5.30898 5.52781 5.61345 5.63006 5.68997 5.69561 5.74078 5.85674 6.20040 6.64918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.124 2.876 3 C -0.461 4.461 4 C -0.462 4.462 5 C -0.380 4.380 6 C -0.096 4.096 7 C -0.128 4.128 8 C -0.038 4.038 9 C -0.053 4.053 10 C -0.072 4.072 11 C -0.189 4.189 12 C 0.101 3.899 13 O -0.327 6.327 14 C 0.405 3.595 15 F -0.209 7.209 16 F -0.209 7.209 17 C -0.149 4.149 18 C -0.074 4.074 19 C -0.084 4.084 20 O -0.541 6.541 21 Si 0.972 3.028 22 H -0.245 1.245 23 H -0.265 1.265 24 H -0.254 1.254 25 C -0.132 4.132 26 C -0.096 4.096 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.234 0.766 41 H 0.147 0.853 42 H 0.124 0.876 43 H 0.386 0.614 44 H 0.127 0.873 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -0.128 0.607 0.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.311 2.689 3 C -0.568 4.568 4 C -0.569 4.569 5 C -0.420 4.420 6 C -0.114 4.114 7 C -0.146 4.146 8 C -0.038 4.038 9 C -0.054 4.054 10 C -0.090 4.090 11 C -0.208 4.208 12 C 0.058 3.942 13 O -0.245 6.245 14 C 0.316 3.684 15 F -0.191 7.191 16 F -0.191 7.191 17 C -0.167 4.167 18 C -0.074 4.074 19 C -0.193 4.193 20 O -0.347 6.347 21 Si 0.795 3.205 22 H -0.169 1.169 23 H -0.190 1.190 24 H -0.178 1.178 25 C -0.150 4.150 26 C -0.114 4.114 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.250 0.750 41 H 0.164 0.836 42 H 0.141 0.859 43 H 0.235 0.765 44 H 0.144 0.856 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.632 0.599 1.112 1.412 hybrid contribution -0.313 -1.118 0.192 1.177 sum 0.319 -0.519 1.304 1.439 Atomic orbital electron populations 1.26275 1.21577 1.04403 1.04529 0.77202 0.65196 0.64722 0.61776 1.26265 1.06377 1.19340 1.04847 1.26282 1.06345 1.08449 1.15847 1.27945 1.03452 0.99486 1.11110 1.21264 0.97023 0.95182 0.97904 1.21370 1.00396 0.99851 0.92983 1.18668 0.99143 0.93627 0.92384 1.18774 0.94682 0.96415 0.95499 1.21215 0.99558 0.93696 0.94513 1.21619 0.96789 1.03272 0.99105 1.18947 0.94081 0.93816 0.87355 1.86625 1.50385 1.45582 1.41864 1.24278 0.77419 0.76740 0.89915 1.93087 1.44114 1.89225 1.92658 1.93088 1.96038 1.63324 1.66613 1.20445 1.01977 0.96519 0.97747 1.20247 0.95377 0.97725 0.94100 1.25225 1.01258 0.97245 0.95614 1.86547 1.59589 1.57296 1.31300 0.85381 0.78199 0.80232 0.76699 1.16853 1.19000 1.17814 1.21423 1.00678 0.93495 0.99412 1.21293 0.96967 1.00586 0.92530 0.91384 0.90721 0.91464 0.91365 0.90699 0.90855 0.91007 0.90697 0.91428 0.84659 0.86214 0.84014 0.84277 0.75029 0.83612 0.85885 0.76523 0.85563 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.23 8.65 113.37 0.98 2.21 16 2 Si 1.12 -5.03 12.31 68.60 0.84 -4.18 16 3 C -0.46 1.50 8.52 113.37 0.97 2.47 16 4 C -0.46 1.35 8.52 113.37 0.97 2.32 16 5 C -0.38 -0.32 4.60 22.31 0.10 -0.21 16 6 C -0.10 -0.23 9.28 22.24 0.21 -0.02 16 7 C -0.13 -0.59 9.63 22.48 0.22 -0.37 16 8 C -0.04 -0.20 4.85 -20.04 -0.10 -0.30 16 9 C -0.05 -0.27 5.40 -20.03 -0.11 -0.38 16 10 C -0.07 -0.32 9.62 22.46 0.22 -0.11 16 11 C -0.19 -0.92 8.24 22.33 0.18 -0.73 16 12 C 0.10 0.50 6.49 22.55 0.15 0.65 16 13 O -0.33 -0.70 10.43 -92.14 -0.96 -1.66 16 14 C 0.41 -1.19 5.98 113.37 0.68 -0.52 16 15 F -0.21 -0.25 15.57 44.97 0.70 0.45 16 16 F -0.21 -0.22 15.57 44.97 0.70 0.48 16 17 C -0.15 -0.56 8.59 22.33 0.19 -0.36 16 18 C -0.07 -0.27 5.26 -19.67 -0.10 -0.38 16 19 C -0.08 -0.14 2.07 71.24 0.15 0.01 16 20 O -0.54 -1.45 12.82 -148.98 -1.91 -3.36 16 21 Si 0.97 0.16 25.48 68.60 1.75 1.91 16 22 H -0.24 0.15 6.74 99.48 0.67 0.83 16 23 H -0.27 -0.73 7.11 99.48 0.71 -0.02 16 24 H -0.25 -0.35 7.11 99.48 0.71 0.35 16 25 C -0.13 -0.52 7.95 22.49 0.18 -0.34 16 26 C -0.10 -0.18 9.28 22.24 0.21 0.03 16 27 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 28 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 30 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 32 H 0.07 -0.28 7.67 -2.39 -0.02 -0.30 16 33 H 0.07 -0.24 7.67 -2.39 -0.02 -0.25 16 34 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H 0.14 -0.23 7.40 -2.91 -0.02 -0.25 16 37 H 0.12 0.36 8.06 -2.91 -0.02 0.34 16 38 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.14 0.54 5.08 -2.91 -0.01 0.52 16 40 H 0.23 -3.18 8.14 -2.39 -0.02 -3.20 16 41 H 0.15 0.15 4.88 -2.91 -0.01 0.13 16 42 H 0.12 0.15 4.94 -2.39 -0.01 0.14 16 43 H 0.39 -1.42 8.70 -74.06 -0.64 -2.07 16 44 H 0.13 0.16 7.01 -2.91 -0.02 0.14 16 45 H 0.14 -0.37 7.40 -2.91 -0.02 -0.39 16 Total: 0.00 -14.95 376.78 7.30 -7.65 By element: Atomic # 1 Polarization: -6.34 SS G_CDS: 1.10 Total: -5.24 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.08 Total: 3.96 kcal Atomic # 8 Polarization: -2.15 SS G_CDS: -2.87 Total: -5.02 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 1.40 Total: 0.93 kcal Atomic # 14 Polarization: -4.87 SS G_CDS: 2.59 Total: -2.28 kcal Total: -14.95 7.30 -7.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_12419882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.937 kcal (2) G-P(sol) polarization free energy of solvation -14.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds