Wall clock time and date at job start Mon Mar 8 2021 09:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34567 * 125.22870 * 2 1 4 4 C 1.48366 * 122.76979 * 359.97438 * 3 2 1 5 5 C 1.39358 * 120.12011 * 309.72505 * 4 3 2 6 6 C 1.38018 * 119.87043 * 179.70169 * 5 4 3 7 7 C 1.38321 * 120.12602 * 0.59715 * 6 5 4 8 8 Si 1.86804 * 119.87926 * 179.70083 * 7 6 5 9 9 C 1.86297 * 109.47056 * 269.97992 * 8 7 6 10 10 C 1.86301 * 109.46998 * 29.98063 * 8 7 6 11 11 C 1.86294 * 109.47229 * 149.97895 * 8 7 6 12 12 C 1.38331 * 120.24614 * 359.67951 * 7 6 5 13 13 C 1.38012 * 120.12330 * 0.02562 * 12 7 6 14 14 C 1.39372 * 114.45877 * 179.71773 * 3 2 1 15 15 C 1.33059 * 114.91499 * 0.48568 * 14 3 2 16 16 C 1.50701 * 125.03339 * 179.79609 * 15 14 3 17 17 O 1.42903 * 109.46878 * 64.72529 * 16 15 14 18 18 Si 1.86300 * 109.46948 * 184.72747 * 16 15 14 19 19 H 1.48503 * 109.47262 * 60.00072 * 18 16 15 20 20 H 1.48500 * 109.46912 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46942 * 299.99736 * 18 16 15 22 22 S 1.75813 * 109.92696 * 359.53809 * 15 14 3 23 23 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47205 * 299.99949 * 1 2 3 25 25 H 1.08997 * 109.47250 * 60.00111 * 1 2 3 26 26 H 1.07994 * 120.06315 * 359.97438 * 5 4 3 27 27 H 1.08003 * 119.93503 * 180.30107 * 6 5 4 28 28 H 1.09003 * 109.46740 * 59.99940 * 9 8 7 29 29 H 1.09001 * 109.46913 * 179.97438 * 9 8 7 30 30 H 1.08999 * 109.47449 * 299.99965 * 9 8 7 31 31 H 1.08994 * 109.47190 * 59.99539 * 10 8 7 32 32 H 1.09000 * 109.47225 * 180.02562 * 10 8 7 33 33 H 1.09011 * 109.46997 * 300.00120 * 10 8 7 34 34 H 1.09006 * 109.47414 * 59.99974 * 11 8 7 35 35 H 1.08997 * 109.47389 * 179.97438 * 11 8 7 36 36 H 1.09003 * 109.47061 * 300.00225 * 11 8 7 37 37 H 1.08001 * 119.93487 * 180.02562 * 12 7 6 38 38 H 1.07993 * 120.06166 * 180.02562 * 13 12 7 39 39 H 1.08001 * 122.54188 * 180.28962 * 14 3 2 40 40 H 1.09001 * 109.46927 * 304.72464 * 16 15 14 41 41 H 0.96695 * 113.99582 * 59.99825 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2832 1.0992 0.0000 4 6 1.7274 2.4748 -0.0006 5 6 0.7515 2.8344 -0.9281 6 6 0.2335 4.1137 -0.9200 7 6 0.6902 5.0417 -0.0016 8 14 -0.0097 6.7737 -0.0023 9 6 1.0056 7.8533 -1.1313 10 6 -1.7725 6.7310 -0.6035 11 6 0.0399 7.4642 1.7272 12 6 1.6629 4.6920 0.9176 13 6 2.1836 3.4138 0.9226 14 6 3.6524 0.8388 0.0063 15 6 3.9776 -0.4514 0.0010 16 6 5.3856 -0.9887 0.0016 17 8 6.0330 -0.6267 1.2230 18 14 5.3419 -2.8449 -0.1519 19 1 4.6691 -3.2210 -1.4212 20 1 6.7293 -3.3744 -0.1507 21 1 4.5926 -3.4188 0.9946 22 16 2.5213 -1.4364 0.0008 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.3980 2.1121 -1.6490 27 1 -0.5264 4.3920 -1.6353 28 1 0.9765 7.4492 -2.1432 29 1 0.5969 8.8638 -1.1320 30 1 2.0369 7.8783 -0.7795 31 1 -2.3664 6.0993 0.0569 32 1 -2.1807 7.7416 -0.6044 33 1 -1.8015 6.3269 -1.6156 34 1 1.0713 7.4892 2.0791 35 1 -0.3680 8.4750 1.7268 36 1 -0.5541 6.8325 2.3878 37 1 2.0155 5.4205 1.6327 38 1 2.9426 3.1417 1.6410 39 1 4.3932 1.6246 0.0116 40 1 5.9355 -0.5674 -0.8400 41 1 5.5969 -0.9683 2.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_13019938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:58 Heat of formation + Delta-G solvation = -33.477177 kcal Electronic energy + Delta-G solvation = -20010.532575 eV Core-core repulsion = 17104.565050 eV Total energy + Delta-G solvation = -2905.967525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 306.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55083 -38.82490 -37.47653 -33.46925 -31.91531 -31.41686 -29.56974 -28.97166 -28.42586 -28.39925 -25.43264 -24.17600 -23.25206 -22.10224 -19.98894 -18.17974 -17.77093 -17.44359 -16.41578 -16.22161 -15.78396 -15.62666 -15.23269 -14.75520 -14.45288 -14.30768 -14.22892 -14.09873 -14.03302 -13.91352 -13.79699 -13.44137 -13.26270 -13.25173 -13.11550 -13.06083 -12.95252 -12.88821 -12.38735 -12.32320 -12.06633 -11.83117 -11.52207 -11.03185 -10.89498 -10.76829 -10.55030 -9.96662 -9.73802 -9.48993 -8.98652 -0.20993 0.35647 0.47127 0.61210 0.79241 1.11128 1.36346 1.49227 1.69261 1.74355 1.86347 1.86494 2.01769 2.56631 3.01309 3.37449 3.68533 3.81891 4.05094 4.06829 4.17258 4.30079 4.49755 4.52170 4.60535 4.66996 4.68779 4.71076 4.72268 4.75731 4.76438 4.77124 4.77958 4.98207 4.99354 5.07692 5.19588 5.28455 5.38250 5.44611 5.51753 5.54866 5.62489 5.68077 5.74947 6.17736 6.45114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.152 4.152 3 C -0.078 4.078 4 C -0.015 4.015 5 C -0.119 4.119 6 C -0.087 4.087 7 C -0.370 4.370 8 Si 1.058 2.942 9 C -0.450 4.450 10 C -0.449 4.449 11 C -0.450 4.450 12 C -0.086 4.086 13 C -0.116 4.116 14 C -0.081 4.081 15 C -0.225 4.225 16 C -0.037 4.037 17 O -0.534 6.534 18 Si 0.896 3.104 19 H -0.235 1.235 20 H -0.228 1.228 21 H -0.235 1.235 22 S 0.092 5.908 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 0.681 0.042 1.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.269 4.269 3 C -0.090 4.090 4 C -0.017 4.017 5 C -0.137 4.137 6 C -0.105 4.105 7 C -0.412 4.412 8 Si 1.250 2.750 9 C -0.557 4.557 10 C -0.557 4.557 11 C -0.557 4.557 12 C -0.104 4.104 13 C -0.135 4.135 14 C -0.111 4.111 15 C -0.342 4.342 16 C -0.150 4.150 17 O -0.339 6.339 18 Si 0.716 3.284 19 H -0.158 1.158 20 H -0.151 1.151 21 H -0.157 1.157 22 S 0.358 5.642 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.143 0.857 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.670 -1.609 -0.449 2.362 hybrid contribution -0.007 1.483 0.360 1.526 sum -1.676 -0.126 -0.089 1.683 Atomic orbital electron populations 1.20454 0.87465 1.02996 1.03534 1.24682 0.99957 0.94703 1.07606 1.17736 0.92453 0.92590 1.06192 1.18384 0.96304 0.90978 0.96051 1.21270 0.97040 0.96871 0.98513 1.20997 0.98618 0.92924 0.97956 1.27386 1.01616 1.14510 0.97638 0.78183 0.66574 0.62915 0.67310 1.26128 1.09382 1.09673 1.10487 1.26135 1.18832 1.04595 1.06131 1.26138 1.04548 1.06701 1.18339 1.21008 0.95872 0.95648 0.97889 1.21272 1.00240 0.93416 0.98561 1.19999 0.95109 0.95921 1.00109 1.24601 0.98795 0.97059 1.13765 1.24332 0.88586 1.11106 0.91021 1.86534 1.53504 1.78930 1.14907 0.86246 0.83924 0.74740 0.83480 1.15779 1.15074 1.15747 1.84336 0.96750 1.09398 1.73714 0.91238 0.90161 0.90070 0.86253 0.86087 0.91195 0.91097 0.91173 0.91077 0.91003 0.91198 0.91181 0.91007 0.91078 0.86067 0.86221 0.83796 0.85709 0.77520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.02 9.31 36.00 0.34 0.36 16 2 C -0.15 -0.23 6.49 -35.61 -0.23 -0.46 16 3 C -0.08 -0.16 5.36 -106.60 -0.57 -0.73 16 4 C -0.01 -0.03 5.34 -104.89 -0.56 -0.59 16 5 C -0.12 -0.15 8.64 -39.25 -0.34 -0.49 16 6 C -0.09 -0.03 9.28 -39.63 -0.37 -0.40 16 7 C -0.37 0.02 4.60 -39.52 -0.18 -0.16 16 8 Si 1.06 -2.51 12.31 -169.99 -2.09 -4.60 16 9 C -0.45 0.58 8.65 101.05 0.87 1.45 16 10 C -0.45 0.79 8.52 101.05 0.86 1.65 16 11 C -0.45 0.74 8.52 101.05 0.86 1.60 16 12 C -0.09 -0.05 9.28 -39.63 -0.37 -0.42 16 13 C -0.12 -0.18 9.61 -39.25 -0.38 -0.56 16 14 C -0.08 -0.15 9.69 -40.96 -0.40 -0.55 16 15 C -0.23 -0.28 5.68 -36.11 -0.21 -0.49 16 16 C -0.04 0.00 2.95 36.01 0.11 0.10 16 17 O -0.53 -0.30 12.88 -35.23 -0.45 -0.76 16 18 Si 0.90 0.01 26.24 -169.99 -4.46 -4.45 16 19 H -0.23 -0.17 7.11 56.52 0.40 0.23 16 20 H -0.23 -0.18 7.11 56.52 0.40 0.22 16 21 H -0.23 -0.06 7.11 56.52 0.40 0.34 16 22 S 0.09 0.12 20.54 -107.50 -2.21 -2.08 16 23 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 24 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 25 H 0.08 -0.08 6.32 -51.93 -0.33 -0.41 16 26 H 0.12 0.02 6.63 -52.49 -0.35 -0.32 16 27 H 0.12 -0.18 7.40 -52.48 -0.39 -0.57 16 28 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.13 7.67 -51.92 -0.40 -0.53 16 34 H 0.07 -0.12 7.67 -51.93 -0.40 -0.52 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.12 -0.15 7.40 -52.49 -0.39 -0.54 16 38 H 0.12 0.09 8.06 -52.49 -0.42 -0.33 16 39 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 40 H 0.13 -0.10 7.96 -51.93 -0.41 -0.52 16 41 H 0.38 -0.93 8.70 45.56 0.40 -0.54 16 LS Contribution 353.11 15.07 5.32 5.32 Total: 0.00 -4.43 353.11 -10.10 -14.53 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: -5.65 Total: -8.27 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.56 Total: 0.32 kcal Atomic # 8 Polarization: -0.30 SS G_CDS: -0.45 Total: -0.76 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: -6.55 Total: -9.05 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.21 Total: -2.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -4.43 -10.10 -14.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13019938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.951 kcal (2) G-P(sol) polarization free energy of solvation -4.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds