Wall clock time and date at job start Mon Mar 8 2021 09:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34567 * 125.22870 * 2 1 4 4 C 1.48366 * 122.76979 * 359.97438 * 3 2 1 5 5 C 1.39358 * 120.12011 * 309.72505 * 4 3 2 6 6 C 1.38018 * 119.87043 * 179.70169 * 5 4 3 7 7 C 1.38321 * 120.12602 * 0.59715 * 6 5 4 8 8 Si 1.86804 * 119.87926 * 179.70083 * 7 6 5 9 9 C 1.86297 * 109.47056 * 269.97992 * 8 7 6 10 10 C 1.86301 * 109.46998 * 29.98063 * 8 7 6 11 11 C 1.86294 * 109.47229 * 149.97895 * 8 7 6 12 12 C 1.38331 * 120.24614 * 359.67951 * 7 6 5 13 13 C 1.38012 * 120.12330 * 0.02562 * 12 7 6 14 14 C 1.39372 * 114.45877 * 179.71773 * 3 2 1 15 15 C 1.33059 * 114.91499 * 0.48568 * 14 3 2 16 16 C 1.50701 * 125.03339 * 179.79609 * 15 14 3 17 17 O 1.42903 * 109.46878 * 64.72529 * 16 15 14 18 18 Si 1.86300 * 109.46948 * 184.72747 * 16 15 14 19 19 H 1.48503 * 109.47262 * 60.00072 * 18 16 15 20 20 H 1.48500 * 109.46912 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46942 * 299.99736 * 18 16 15 22 22 S 1.75813 * 109.92696 * 359.53809 * 15 14 3 23 23 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47205 * 299.99949 * 1 2 3 25 25 H 1.08997 * 109.47250 * 60.00111 * 1 2 3 26 26 H 1.07994 * 120.06315 * 359.97438 * 5 4 3 27 27 H 1.08003 * 119.93503 * 180.30107 * 6 5 4 28 28 H 1.09003 * 109.46740 * 59.99940 * 9 8 7 29 29 H 1.09001 * 109.46913 * 179.97438 * 9 8 7 30 30 H 1.08999 * 109.47449 * 299.99965 * 9 8 7 31 31 H 1.08994 * 109.47190 * 59.99539 * 10 8 7 32 32 H 1.09000 * 109.47225 * 180.02562 * 10 8 7 33 33 H 1.09011 * 109.46997 * 300.00120 * 10 8 7 34 34 H 1.09006 * 109.47414 * 59.99974 * 11 8 7 35 35 H 1.08997 * 109.47389 * 179.97438 * 11 8 7 36 36 H 1.09003 * 109.47061 * 300.00225 * 11 8 7 37 37 H 1.08001 * 119.93487 * 180.02562 * 12 7 6 38 38 H 1.07993 * 120.06166 * 180.02562 * 13 12 7 39 39 H 1.08001 * 122.54188 * 180.28962 * 14 3 2 40 40 H 1.09001 * 109.46927 * 304.72464 * 16 15 14 41 41 H 0.96695 * 113.99582 * 59.99825 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2832 1.0992 0.0000 4 6 1.7274 2.4748 -0.0006 5 6 0.7515 2.8344 -0.9281 6 6 0.2335 4.1137 -0.9200 7 6 0.6902 5.0417 -0.0016 8 14 -0.0097 6.7737 -0.0023 9 6 1.0056 7.8533 -1.1313 10 6 -1.7725 6.7310 -0.6035 11 6 0.0399 7.4642 1.7272 12 6 1.6629 4.6920 0.9176 13 6 2.1836 3.4138 0.9226 14 6 3.6524 0.8388 0.0063 15 6 3.9776 -0.4514 0.0010 16 6 5.3856 -0.9887 0.0016 17 8 6.0330 -0.6267 1.2230 18 14 5.3419 -2.8449 -0.1519 19 1 4.6691 -3.2210 -1.4212 20 1 6.7293 -3.3744 -0.1507 21 1 4.5926 -3.4188 0.9946 22 16 2.5213 -1.4364 0.0008 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.3980 2.1121 -1.6490 27 1 -0.5264 4.3920 -1.6353 28 1 0.9765 7.4492 -2.1432 29 1 0.5969 8.8638 -1.1320 30 1 2.0369 7.8783 -0.7795 31 1 -2.3664 6.0993 0.0569 32 1 -2.1807 7.7416 -0.6044 33 1 -1.8015 6.3269 -1.6156 34 1 1.0713 7.4892 2.0791 35 1 -0.3680 8.4750 1.7268 36 1 -0.5541 6.8325 2.3878 37 1 2.0155 5.4205 1.6327 38 1 2.9426 3.1417 1.6410 39 1 4.3932 1.6246 0.0116 40 1 5.9355 -0.5674 -0.8400 41 1 5.5969 -0.9683 2.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13019938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:58 Heat of formation + Delta-G solvation = -22.088604 kcal Electronic energy + Delta-G solvation = -20010.038730 eV Core-core repulsion = 17104.565050 eV Total energy + Delta-G solvation = -2905.473680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 306.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59505 -38.85987 -37.50904 -33.51043 -31.93073 -31.42656 -29.44324 -28.97709 -28.26616 -28.25448 -25.47510 -24.22280 -23.27247 -22.14834 -20.04379 -18.24664 -17.80942 -17.47006 -16.43930 -16.23907 -15.81346 -15.66104 -15.26465 -14.77239 -14.47358 -14.29886 -14.14251 -14.01732 -13.96940 -13.84950 -13.69876 -13.41064 -13.16089 -13.11276 -13.07111 -12.96445 -12.94663 -12.88449 -12.44546 -12.36463 -12.08854 -11.83954 -11.58679 -10.91560 -10.73734 -10.72537 -10.57352 -10.00340 -9.77611 -9.58210 -9.05085 -0.28895 0.30869 0.39643 0.57391 0.71643 1.07842 1.34167 1.45914 1.62278 1.82714 1.88113 2.05238 2.15000 2.69458 2.99039 3.40045 3.66918 3.78017 4.01463 4.06254 4.16530 4.28743 4.51404 4.54036 4.62942 4.64533 4.70007 4.85787 4.86006 4.89483 4.90194 4.91273 4.91923 4.94345 5.00627 5.03778 5.15217 5.24456 5.32309 5.55744 5.61401 5.62379 5.69044 5.69547 5.73531 6.17091 6.57412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.158 4.158 3 C -0.088 4.088 4 C -0.029 4.029 5 C -0.129 4.129 6 C -0.096 4.096 7 C -0.380 4.380 8 Si 1.126 2.874 9 C -0.464 4.464 10 C -0.461 4.461 11 C -0.463 4.463 12 C -0.096 4.096 13 C -0.132 4.132 14 C -0.092 4.092 15 C -0.224 4.224 16 C -0.036 4.036 17 O -0.546 6.546 18 Si 0.922 3.078 19 H -0.245 1.245 20 H -0.238 1.238 21 H -0.238 1.238 22 S 0.086 5.914 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.140 0.860 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 1.210 -0.032 2.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.275 4.275 3 C -0.100 4.100 4 C -0.032 4.032 5 C -0.147 4.147 6 C -0.113 4.113 7 C -0.420 4.420 8 Si 1.313 2.687 9 C -0.570 4.570 10 C -0.568 4.568 11 C -0.570 4.570 12 C -0.114 4.114 13 C -0.150 4.150 14 C -0.122 4.122 15 C -0.341 4.341 16 C -0.149 4.149 17 O -0.353 6.353 18 Si 0.743 3.257 19 H -0.169 1.169 20 H -0.161 1.161 21 H -0.161 1.161 22 S 0.352 5.648 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.143 0.857 27 H 0.158 0.842 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.155 0.845 38 H 0.138 0.862 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.188 -1.089 -0.514 2.498 hybrid contribution 0.162 1.335 0.390 1.400 sum -2.026 0.246 -0.124 2.045 Atomic orbital electron populations 1.20508 0.86383 1.03663 1.03854 1.24915 1.00800 0.94478 1.07331 1.17873 0.92661 0.92975 1.06485 1.18501 0.96934 0.91066 0.96658 1.21440 0.97108 0.97577 0.98610 1.21313 0.98937 0.92685 0.98405 1.27971 1.01141 1.15908 0.96965 0.77169 0.65196 0.60406 0.65925 1.26305 1.09572 1.10340 1.10782 1.26258 1.19336 1.04791 1.06397 1.26286 1.04659 1.06965 1.19046 1.21291 0.96040 0.95625 0.98457 1.21422 1.00695 0.94040 0.98852 1.20084 0.95234 0.96214 1.00691 1.24741 0.99224 0.96866 1.13270 1.24395 0.88033 1.11186 0.91253 1.86503 1.53941 1.79238 1.15584 0.85879 0.82874 0.74252 0.82671 1.16862 1.16133 1.16092 1.84298 0.97012 1.09609 1.73852 0.90375 0.90196 0.89309 0.85683 0.84250 0.91444 0.90728 0.91532 0.91206 0.90723 0.90876 0.91044 0.90712 0.91288 0.84546 0.86211 0.83814 0.84928 0.76140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.02 9.31 71.24 0.66 0.69 16 2 C -0.16 -0.59 6.49 24.84 0.16 -0.43 16 3 C -0.09 -0.46 5.36 -21.15 -0.11 -0.57 16 4 C -0.03 -0.14 5.34 -20.04 -0.11 -0.25 16 5 C -0.13 -0.38 8.64 22.49 0.19 -0.19 16 6 C -0.10 -0.06 9.28 22.24 0.21 0.15 16 7 C -0.38 0.13 4.60 22.31 0.10 0.23 16 8 Si 1.13 -6.17 12.31 68.60 0.84 -5.33 16 9 C -0.46 1.43 8.65 113.37 0.98 2.41 16 10 C -0.46 2.06 8.52 113.37 0.97 3.03 16 11 C -0.46 1.83 8.52 113.37 0.97 2.80 16 12 C -0.10 -0.14 9.28 22.24 0.21 0.07 16 13 C -0.13 -0.54 9.61 22.49 0.22 -0.32 16 14 C -0.09 -0.43 9.69 21.38 0.21 -0.22 16 15 C -0.22 -0.71 5.68 24.53 0.14 -0.57 16 16 C -0.04 -0.02 2.95 71.24 0.21 0.19 16 17 O -0.55 -0.75 12.88 -148.98 -1.92 -2.67 16 18 Si 0.92 0.31 26.24 68.60 1.80 2.11 16 19 H -0.25 -0.47 7.11 99.48 0.71 0.23 16 20 H -0.24 -0.45 7.11 99.48 0.71 0.26 16 21 H -0.24 -0.17 7.11 99.48 0.71 0.54 16 22 S 0.09 0.28 20.54 -56.49 -1.16 -0.88 16 23 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.09 -0.17 6.32 -2.39 -0.02 -0.19 16 26 H 0.13 0.10 6.63 -2.91 -0.02 0.08 16 27 H 0.14 -0.54 7.40 -2.91 -0.02 -0.56 16 28 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 29 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 30 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.07 -0.36 7.67 -2.38 -0.02 -0.38 16 34 H 0.07 -0.29 7.67 -2.38 -0.02 -0.31 16 35 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 37 H 0.14 -0.35 7.40 -2.91 -0.02 -0.37 16 38 H 0.12 0.35 8.06 -2.91 -0.02 0.33 16 39 H 0.14 0.58 8.06 -2.91 -0.02 0.55 16 40 H 0.13 -0.18 7.96 -2.39 -0.02 -0.20 16 41 H 0.39 -1.82 8.70 -74.06 -0.64 -2.46 16 Total: 0.00 -10.03 353.11 5.69 -4.34 By element: Atomic # 1 Polarization: -5.71 SS G_CDS: 1.12 Total: -4.59 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.00 Total: 7.01 kcal Atomic # 8 Polarization: -0.75 SS G_CDS: -1.92 Total: -2.67 kcal Atomic # 14 Polarization: -5.86 SS G_CDS: 2.64 Total: -3.22 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.16 Total: -0.88 kcal Total: -10.03 5.69 -4.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13019938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.751 kcal (2) G-P(sol) polarization free energy of solvation -10.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds