Wall clock time and date at job start Mon Mar 8 2021 09:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.47057 * 2 1 4 4 C 1.86299 * 109.46973 * 240.00060 * 2 1 3 5 5 C 1.86799 * 109.47199 * 120.00301 * 2 1 3 6 6 C 1.38315 * 119.88308 * 89.99875 * 5 2 1 7 7 C 1.38014 * 120.12621 * 180.02562 * 6 5 2 8 8 C 1.39347 * 119.87608 * 359.97438 * 7 6 5 9 9 C 1.48379 * 120.11694 * 180.02562 * 8 7 6 10 10 C 1.39327 * 120.09856 * 359.97438 * 9 8 7 11 11 C 1.38001 * 119.90199 * 179.97438 * 10 9 8 12 12 C 1.38528 * 120.09365 * 0.28025 * 11 10 9 13 13 F 1.35105 * 119.89994 * 179.69575 * 12 11 10 14 14 C 1.38568 * 120.19109 * 359.44578 * 12 11 10 15 15 C 1.50710 * 119.95084 * 180.27728 * 14 12 11 16 16 O 1.42901 * 109.46809 * 75.27152 * 15 14 12 17 17 Si 1.86300 * 109.47116 * 315.27462 * 15 14 12 18 18 H 1.48502 * 109.47191 * 59.99753 * 17 15 14 19 19 H 1.48495 * 109.46941 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47091 * 300.00013 * 17 15 14 21 21 C 1.37951 * 120.09830 * 0.54901 * 14 12 11 22 22 C 1.39334 * 119.75732 * 0.27716 * 8 7 6 23 23 C 1.38026 * 119.87484 * 359.44601 * 22 8 7 24 24 H 1.08998 * 109.46736 * 299.99872 * 1 2 3 25 25 H 1.08999 * 109.47235 * 59.99507 * 1 2 3 26 26 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46867 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47378 * 299.99608 * 3 2 1 29 29 H 1.08998 * 109.47243 * 60.00438 * 3 2 1 30 30 H 1.08999 * 109.47150 * 299.99829 * 4 2 1 31 31 H 1.08994 * 109.47437 * 60.00407 * 4 2 1 32 32 H 1.09004 * 109.47120 * 180.02562 * 4 2 1 33 33 H 1.07999 * 119.93467 * 0.02562 * 6 5 2 34 34 H 1.08001 * 120.06264 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.04918 * 359.95820 * 10 9 8 36 36 H 1.08002 * 119.94871 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.46822 * 195.27325 * 15 14 12 38 38 H 0.96697 * 114.00488 * 300.00046 * 16 15 14 39 39 H 1.08001 * 120.04738 * 179.74531 * 21 14 12 40 40 H 1.08003 * 120.06301 * 179.70915 * 22 8 7 41 41 H 1.08000 * 119.93866 * 180.25281 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7154 -2.2441 1.4881 7 6 3.1749 -2.8999 2.6122 8 6 3.4081 -2.1858 3.7858 9 6 3.9027 -2.8853 4.9973 10 6 4.1350 -4.2587 4.9651 11 6 4.5956 -4.9052 6.0940 12 6 4.8213 -4.1915 7.2597 13 9 5.2663 -4.8294 8.3644 14 6 4.5969 -2.8246 7.2944 15 6 4.8502 -2.0525 8.5637 16 8 6.2575 -1.8859 8.7470 17 14 4.1417 -2.9874 10.0111 18 1 4.7899 -4.3202 10.1046 19 1 4.3919 -2.2269 11.2617 20 1 2.6792 -3.1606 9.8205 21 6 4.1366 -2.1703 6.1705 22 6 3.1700 -0.8133 3.8190 23 6 2.7159 -0.1667 2.6873 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.5740 1.7564 -0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1207 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5211 31 1 2.1207 -0.3644 -2.4111 32 1 3.5740 -0.8786 -1.5209 33 1 2.5348 -2.7965 0.5779 34 1 3.3543 -3.9645 2.5820 35 1 3.9548 -4.8166 4.0581 36 1 4.7755 -5.9698 6.0700 37 1 4.3744 -1.0743 8.4949 38 1 6.7463 -2.7174 8.8164 39 1 3.9581 -1.1056 6.1997 40 1 3.3445 -0.2558 4.7274 41 1 2.5349 0.8978 2.7108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_17507730_13286442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:07 Heat of formation + Delta-G solvation = -69.241242 kcal Electronic energy + Delta-G solvation = -21732.215685 eV Core-core repulsion = 18421.628710 eV Total energy + Delta-G solvation = -3310.586975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.28818 -40.95602 -39.37388 -37.65463 -33.56720 -32.97841 -31.83452 -29.85874 -29.24037 -28.48362 -28.43603 -27.00267 -24.61229 -23.90203 -22.60768 -21.54491 -19.07942 -18.54792 -17.82165 -17.65198 -17.06673 -16.57076 -15.83212 -15.79925 -15.32012 -15.22481 -15.07532 -14.70929 -14.38983 -14.31903 -14.24283 -14.23023 -13.94788 -13.86153 -13.63474 -13.37585 -13.30940 -13.20840 -13.12270 -12.96639 -12.69717 -12.37321 -12.10845 -11.77341 -11.22551 -11.08377 -10.93124 -10.87995 -10.61663 -10.39317 -10.00773 -9.84359 -8.96113 -0.52282 0.05754 0.51762 0.66542 1.15245 1.50947 1.55572 1.68271 1.82163 1.90892 1.98251 2.43481 2.51861 3.05090 3.10007 3.30145 3.51870 3.55201 3.61104 3.95534 3.97466 4.08832 4.15712 4.34911 4.45018 4.59076 4.67465 4.68227 4.68859 4.72434 4.72856 4.73486 4.73888 4.81933 4.94382 4.99904 5.06289 5.08598 5.19944 5.39743 5.45488 5.48287 5.51481 5.59794 5.67064 5.73822 6.07138 6.45138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.367 4.367 6 C -0.086 4.086 7 C -0.120 4.120 8 C -0.040 4.040 9 C -0.051 4.051 10 C -0.081 4.081 11 C -0.142 4.142 12 C 0.089 3.911 13 F -0.129 7.129 14 C -0.145 4.145 15 C -0.079 4.079 16 O -0.533 6.533 17 Si 0.936 3.064 18 H -0.228 1.228 19 H -0.254 1.254 20 H -0.252 1.252 21 C -0.063 4.063 22 C -0.120 4.120 23 C -0.085 4.085 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.121 0.879 38 H 0.376 0.624 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 0.103 -2.952 3.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.409 4.409 6 C -0.104 4.104 7 C -0.138 4.138 8 C -0.040 4.040 9 C -0.051 4.051 10 C -0.099 4.099 11 C -0.161 4.161 12 C 0.070 3.930 13 F -0.107 7.107 14 C -0.146 4.146 15 C -0.189 4.189 16 O -0.339 6.339 17 Si 0.756 3.244 18 H -0.151 1.151 19 H -0.178 1.178 20 H -0.175 1.175 21 C -0.081 4.081 22 C -0.138 4.138 23 C -0.103 4.103 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.139 0.861 38 H 0.224 0.776 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.947 0.216 -2.167 2.921 hybrid contribution 0.454 -0.588 -0.094 0.748 sum -1.494 -0.372 -2.261 2.736 Atomic orbital electron populations 1.26127 1.20471 1.04575 1.04500 0.78182 0.66857 0.66138 0.63724 1.26138 1.06483 1.18560 1.04578 1.26138 1.06473 1.08039 1.15098 1.27458 1.03641 0.99509 1.10268 1.21022 0.97061 0.94630 0.97656 1.21298 1.00045 0.99747 0.92698 1.18700 0.99424 0.93435 0.92400 1.18904 0.99751 0.93265 0.93160 1.21163 0.97020 0.93552 0.98138 1.21117 1.02073 1.01171 0.91712 1.17732 1.01044 0.90212 0.84057 1.91565 1.86984 1.82205 1.49961 1.20247 1.03808 0.92307 0.98279 1.24945 0.87439 1.06038 1.00448 1.86541 1.16819 1.35072 1.95427 0.86144 0.80418 0.80487 0.77311 1.15059 1.17798 1.17544 1.21003 0.96508 1.00233 0.90343 1.21315 0.99962 0.93581 0.98914 1.21032 0.97023 0.99739 0.92529 0.91169 0.91034 0.91177 0.91040 0.90951 0.91163 0.91184 0.90945 0.91047 0.85895 0.85950 0.84394 0.84031 0.86120 0.77633 0.84303 0.85924 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.80 8.65 101.05 0.87 1.67 16 2 Si 1.06 -3.01 12.31 -169.99 -2.09 -5.10 16 3 C -0.45 0.93 8.52 101.05 0.86 1.79 16 4 C -0.45 0.95 8.52 101.05 0.86 1.81 16 5 C -0.37 0.23 4.60 -39.52 -0.18 0.05 16 6 C -0.09 0.02 9.28 -39.64 -0.37 -0.35 16 7 C -0.12 -0.04 9.43 -39.25 -0.37 -0.41 16 8 C -0.04 -0.04 5.88 -104.90 -0.62 -0.66 16 9 C -0.05 -0.04 5.88 -104.89 -0.62 -0.66 16 10 C -0.08 0.00 9.43 -39.26 -0.37 -0.37 16 11 C -0.14 -0.03 10.01 -39.56 -0.40 -0.42 16 12 C 0.09 0.11 6.63 -39.35 -0.26 -0.15 16 13 F -0.13 -0.22 12.58 2.25 0.03 -0.19 16 14 C -0.15 -0.14 4.78 -104.60 -0.50 -0.64 16 15 C -0.08 -0.03 2.81 36.01 0.10 0.07 16 16 O -0.53 -0.74 12.88 -35.23 -0.45 -1.19 16 17 Si 0.94 0.76 26.08 -169.99 -4.43 -3.67 16 18 H -0.23 -0.33 5.28 56.52 0.30 -0.03 16 19 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 20 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 21 C -0.06 -0.04 9.04 -39.26 -0.36 -0.39 16 22 C -0.12 -0.06 9.43 -39.25 -0.37 -0.43 16 23 C -0.09 0.01 9.28 -39.63 -0.37 -0.35 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.16 7.67 -51.93 -0.40 -0.55 16 30 H 0.07 -0.16 7.67 -51.93 -0.40 -0.56 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.12 -0.27 7.40 -52.49 -0.39 -0.66 16 34 H 0.12 -0.18 6.21 -52.49 -0.33 -0.51 16 35 H 0.14 -0.29 6.20 -52.49 -0.33 -0.61 16 36 H 0.14 -0.23 8.06 -52.49 -0.42 -0.65 16 37 H 0.12 -0.14 7.77 -51.93 -0.40 -0.54 16 38 H 0.38 -0.44 8.45 45.56 0.38 -0.06 16 39 H 0.14 -0.16 6.14 -52.49 -0.32 -0.48 16 40 H 0.12 -0.14 6.21 -52.48 -0.33 -0.47 16 41 H 0.12 -0.25 7.40 -52.49 -0.39 -0.64 16 LS Contribution 340.40 15.07 5.13 5.13 Total: 0.00 -5.15 340.40 -9.00 -14.15 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -5.11 Total: -9.68 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.07 Total: 0.56 kcal Atomic # 8 Polarization: -0.74 SS G_CDS: -0.45 Total: -1.19 kcal Atomic # 9 Polarization: -0.22 SS G_CDS: 0.03 Total: -0.19 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: -6.52 Total: -8.78 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -5.15 -9.00 -14.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.092 kcal (2) G-P(sol) polarization free energy of solvation -5.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds