Wall clock time and date at job start Mon Mar 8 2021 09:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.47057 * 2 1 4 4 C 1.86299 * 109.46973 * 240.00060 * 2 1 3 5 5 C 1.86799 * 109.47199 * 120.00301 * 2 1 3 6 6 C 1.38315 * 119.88308 * 89.99875 * 5 2 1 7 7 C 1.38014 * 120.12621 * 180.02562 * 6 5 2 8 8 C 1.39347 * 119.87608 * 359.97438 * 7 6 5 9 9 C 1.48379 * 120.11694 * 180.02562 * 8 7 6 10 10 C 1.39327 * 120.09856 * 359.97438 * 9 8 7 11 11 C 1.38001 * 119.90199 * 179.97438 * 10 9 8 12 12 C 1.38528 * 120.09365 * 0.28025 * 11 10 9 13 13 F 1.35105 * 119.89994 * 179.69575 * 12 11 10 14 14 C 1.38568 * 120.19109 * 359.44578 * 12 11 10 15 15 C 1.50710 * 119.95084 * 180.27728 * 14 12 11 16 16 O 1.42901 * 109.46809 * 75.27152 * 15 14 12 17 17 Si 1.86300 * 109.47116 * 315.27462 * 15 14 12 18 18 H 1.48502 * 109.47191 * 59.99753 * 17 15 14 19 19 H 1.48495 * 109.46941 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47091 * 300.00013 * 17 15 14 21 21 C 1.37951 * 120.09830 * 0.54901 * 14 12 11 22 22 C 1.39334 * 119.75732 * 0.27716 * 8 7 6 23 23 C 1.38026 * 119.87484 * 359.44601 * 22 8 7 24 24 H 1.08998 * 109.46736 * 299.99872 * 1 2 3 25 25 H 1.08999 * 109.47235 * 59.99507 * 1 2 3 26 26 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46867 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47378 * 299.99608 * 3 2 1 29 29 H 1.08998 * 109.47243 * 60.00438 * 3 2 1 30 30 H 1.08999 * 109.47150 * 299.99829 * 4 2 1 31 31 H 1.08994 * 109.47437 * 60.00407 * 4 2 1 32 32 H 1.09004 * 109.47120 * 180.02562 * 4 2 1 33 33 H 1.07999 * 119.93467 * 0.02562 * 6 5 2 34 34 H 1.08001 * 120.06264 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.04918 * 359.95820 * 10 9 8 36 36 H 1.08002 * 119.94871 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.46822 * 195.27325 * 15 14 12 38 38 H 0.96697 * 114.00488 * 300.00046 * 16 15 14 39 39 H 1.08001 * 120.04738 * 179.74531 * 21 14 12 40 40 H 1.08003 * 120.06301 * 179.70915 * 22 8 7 41 41 H 1.08000 * 119.93866 * 180.25281 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7154 -2.2441 1.4881 7 6 3.1749 -2.8999 2.6122 8 6 3.4081 -2.1858 3.7858 9 6 3.9027 -2.8853 4.9973 10 6 4.1350 -4.2587 4.9651 11 6 4.5956 -4.9052 6.0940 12 6 4.8213 -4.1915 7.2597 13 9 5.2663 -4.8294 8.3644 14 6 4.5969 -2.8246 7.2944 15 6 4.8502 -2.0525 8.5637 16 8 6.2575 -1.8859 8.7470 17 14 4.1417 -2.9874 10.0111 18 1 4.7899 -4.3202 10.1046 19 1 4.3919 -2.2269 11.2617 20 1 2.6792 -3.1606 9.8205 21 6 4.1366 -2.1703 6.1705 22 6 3.1700 -0.8133 3.8190 23 6 2.7159 -0.1667 2.6873 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.5740 1.7564 -0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1207 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5211 31 1 2.1207 -0.3644 -2.4111 32 1 3.5740 -0.8786 -1.5209 33 1 2.5348 -2.7965 0.5779 34 1 3.3543 -3.9645 2.5820 35 1 3.9548 -4.8166 4.0581 36 1 4.7755 -5.9698 6.0700 37 1 4.3744 -1.0743 8.4949 38 1 6.7463 -2.7174 8.8164 39 1 3.9581 -1.1056 6.1997 40 1 3.3445 -0.2558 4.7274 41 1 2.5349 0.8978 2.7108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_17507730_13286442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:20:06 Heat of formation + Delta-G solvation = -58.612646 kcal Electronic energy + Delta-G solvation = -21731.754794 eV Core-core repulsion = 18421.628710 eV Total energy + Delta-G solvation = -3310.126084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.36192 -40.92614 -39.33347 -37.69023 -33.54157 -32.96006 -31.77102 -29.75115 -29.12986 -28.29157 -28.25561 -27.01089 -24.59194 -23.86603 -22.56527 -21.52798 -19.08556 -18.57913 -17.81654 -17.67000 -17.11439 -16.56685 -15.83633 -15.77515 -15.31701 -15.16661 -15.03030 -14.76101 -14.38358 -14.27736 -14.19832 -14.04877 -13.79844 -13.70816 -13.53729 -13.26415 -13.16541 -13.08300 -12.96411 -12.90284 -12.65978 -12.38929 -12.20994 -11.72068 -11.27254 -10.99006 -10.77073 -10.73947 -10.64655 -10.35234 -10.01855 -9.79378 -8.94481 -0.51693 0.06141 0.56766 0.69277 1.10007 1.40817 1.45240 1.86560 1.87242 2.04433 2.09459 2.46477 2.68858 3.08156 3.09958 3.30808 3.53937 3.58580 3.63712 4.02286 4.04561 4.16320 4.19849 4.39823 4.54475 4.65695 4.74311 4.83364 4.85790 4.86025 4.89793 4.90597 4.91315 4.92465 5.00315 5.02495 5.07249 5.15980 5.24769 5.47696 5.60675 5.62002 5.69097 5.69537 5.73364 5.75378 6.15269 6.49940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.379 4.379 6 C -0.098 4.098 7 C -0.132 4.132 8 C -0.056 4.056 9 C -0.058 4.058 10 C -0.084 4.084 11 C -0.145 4.145 12 C 0.072 3.928 13 F -0.135 7.135 14 C -0.152 4.152 15 C -0.075 4.075 16 O -0.547 6.547 17 Si 0.964 3.036 18 H -0.239 1.239 19 H -0.271 1.271 20 H -0.265 1.265 21 C -0.071 4.071 22 C -0.135 4.135 23 C -0.099 4.099 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.136 0.864 38 H 0.385 0.615 39 H 0.152 0.848 40 H 0.133 0.867 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 0.254 -3.916 4.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.419 4.419 6 C -0.116 4.116 7 C -0.150 4.150 8 C -0.057 4.057 9 C -0.059 4.059 10 C -0.101 4.101 11 C -0.164 4.164 12 C 0.053 3.947 13 F -0.114 7.114 14 C -0.153 4.153 15 C -0.185 4.185 16 O -0.353 6.353 17 Si 0.788 3.212 18 H -0.162 1.162 19 H -0.196 1.196 20 H -0.189 1.189 21 C -0.089 4.089 22 C -0.152 4.152 23 C -0.116 4.116 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.153 0.847 38 H 0.234 0.766 39 H 0.169 0.831 40 H 0.150 0.850 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.134 0.355 -3.122 3.798 hybrid contribution 0.494 -0.640 0.182 0.829 sum -1.641 -0.285 -2.940 3.379 Atomic orbital electron populations 1.26299 1.21741 1.04433 1.04495 0.77158 0.65087 0.64596 0.61795 1.26292 1.06397 1.19512 1.04815 1.26279 1.06405 1.08517 1.15731 1.27993 1.03020 0.99716 1.11138 1.21343 0.96959 0.95089 0.98231 1.21570 1.00050 1.00628 0.92754 1.18858 1.00185 0.93861 0.92747 1.19072 0.99743 0.93767 0.93274 1.21410 0.96491 0.93465 0.98763 1.21348 1.01621 1.02025 0.91364 1.17950 1.01831 0.90579 0.84332 1.91543 1.87174 1.82314 1.50324 1.20322 1.04070 0.92342 0.98574 1.24938 0.87069 1.06682 0.99854 1.86509 1.17339 1.36075 1.95417 0.85759 0.79237 0.79545 0.76695 1.16208 1.19569 1.18916 1.21198 0.96444 1.01002 0.90222 1.21570 1.00170 0.93764 0.99724 1.21336 0.97011 1.00714 0.92574 0.91456 0.90777 0.91401 0.91331 0.90771 0.90923 0.90845 0.90768 0.91304 0.84204 0.84617 0.82579 0.82457 0.84669 0.76610 0.83055 0.84965 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.87 8.65 113.37 0.98 2.85 16 2 Si 1.13 -7.16 12.31 68.60 0.84 -6.32 16 3 C -0.46 2.18 8.52 113.37 0.97 3.14 16 4 C -0.46 2.29 8.52 113.37 0.97 3.26 16 5 C -0.38 0.62 4.60 22.31 0.10 0.73 16 6 C -0.10 0.09 9.28 22.23 0.21 0.29 16 7 C -0.13 -0.07 9.43 22.48 0.21 0.14 16 8 C -0.06 -0.13 5.88 -20.05 -0.12 -0.24 16 9 C -0.06 -0.11 5.88 -20.04 -0.12 -0.23 16 10 C -0.08 0.01 9.43 22.48 0.21 0.23 16 11 C -0.15 -0.06 10.01 22.28 0.22 0.16 16 12 C 0.07 0.22 6.63 22.42 0.15 0.37 16 13 F -0.13 -0.57 12.58 44.97 0.57 0.00 16 14 C -0.15 -0.36 4.78 -19.85 -0.09 -0.46 16 15 C -0.08 -0.08 2.81 71.24 0.20 0.12 16 16 O -0.55 -1.69 12.88 -148.98 -1.92 -3.61 16 17 Si 0.96 2.42 26.08 68.60 1.79 4.20 16 18 H -0.24 -0.95 5.28 99.48 0.52 -0.43 16 19 H -0.27 -1.34 7.11 99.48 0.71 -0.63 16 20 H -0.26 -1.16 7.11 99.48 0.71 -0.45 16 21 C -0.07 -0.11 9.04 22.47 0.20 0.10 16 22 C -0.13 -0.16 9.43 22.48 0.21 0.05 16 23 C -0.10 0.04 9.28 22.24 0.21 0.25 16 24 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 25 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 28 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 29 H 0.07 -0.37 7.67 -2.39 -0.02 -0.39 16 30 H 0.07 -0.40 7.67 -2.39 -0.02 -0.42 16 31 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 33 H 0.14 -0.73 7.40 -2.91 -0.02 -0.75 16 34 H 0.14 -0.47 6.21 -2.91 -0.02 -0.49 16 35 H 0.16 -0.74 6.20 -2.91 -0.02 -0.76 16 36 H 0.16 -0.56 8.06 -2.91 -0.02 -0.59 16 37 H 0.14 -0.32 7.77 -2.39 -0.02 -0.33 16 38 H 0.39 -0.66 8.45 -74.06 -0.63 -1.28 16 39 H 0.15 -0.32 6.14 -2.91 -0.02 -0.33 16 40 H 0.13 -0.27 6.21 -2.91 -0.02 -0.29 16 41 H 0.14 -0.63 7.40 -2.91 -0.02 -0.65 16 Total: 0.00 -11.76 340.40 6.78 -4.98 By element: Atomic # 1 Polarization: -10.99 SS G_CDS: 0.99 Total: -10.00 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 4.51 Total: 10.75 kcal Atomic # 8 Polarization: -1.69 SS G_CDS: -1.92 Total: -3.61 kcal Atomic # 9 Polarization: -0.57 SS G_CDS: 0.57 Total: 0.00 kcal Atomic # 14 Polarization: -4.75 SS G_CDS: 2.63 Total: -2.11 kcal Total: -11.76 6.78 -4.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_17507730_13286442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.632 kcal (2) G-P(sol) polarization free energy of solvation -11.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds